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  • 2015-2019  (10)
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Keywords
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  • 1
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    Caminella (Porifiera, Demospongiae, Geodiidae) from the NE Atlantic (2018)
    PANGAEA
    In:  Supplement to: Cárdenas, Paco; Vacelet, Jean; Chevaldonné, Pierre; Pérez, Thierry; Xavier, Joana R (2018): From marine caves to the deep sea, a new look at Caminella (Demospongiae, Geodiidae) in the Atlanto-Mediterranean region. Zootaxa, 4466(1), 174, https://doi.org/10.11646/zootaxa.4466.1.14
    Details
    Publication Date: 2023-03-10
    Description: Caminella Lendenfeld, 1894 is a poorly known Geodiidae genus with unclear phylogenetic relationships. In order to find new lines of evidence that could shed light on the evolutionary history of Caminella, we decided to revise type material and museum material, as well as examine new material from underwater caves and deep-sea ecosystems. In doing so, we formally show that Isops maculosus Vosmaer, 1894 and Caminella loricata Lendenfeld, 1894 are junior synonyms of Caminella intuta (Topsent, 1892). We discuss different spicule morphological phenotypes in C. intuta, which may be linked to silica availability. We also discovered two new species of deep-sea Caminella: 1) from Cape Verde (Caminella caboverdensis sp. nov.) and 2) from seamounts located south of the Azores archipelago and the North of Spain (Caminella pustula sp. nov.). We reveal that Caminella sterrasters have complex surface microstructures, unique amongst the Geodiidae, where actin tips are linked to each other. Molecular markers (COI, 28S (C1-D2) and 18S) sequenced for some specimens led to new phylogenetic analyses, which continue to suggest a close relationship of Caminella with the Erylinae and Calthropella; these affinities are discussed in light of morphological characters.
    Keywords: Accession number, genetics; Adriatic Sea; Alboran-Is_reconstr; Alboran-Is_st3; Alboran Sea; Alboran-Sea_BV41; Area/locality; Banc-Atlantis_DW265; Banc-Hyeres_DW184; Banc-Plato_DW248; Bay of Biscay; BIO; Biology; Canarias Sea; Cape-Verde_st6-174; Cap-Ferrat-dAil; Cap-lAbeille_reconst; Chak-El-Hatab; Collection; Comment; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Dugi-Otok-Is_Y-Cave; Eastern Basin; El-Cachucho-Bank_DR9; Grand-Banc-Meteor_CP151; Grotte-Cosquer_reconstr; Grotte-de-Bear_reconstr; Grotte-de-Gameau_reconstr; Grotte-des-Tremies_reconstr; Grotte-du-Figuier_reconstr; Grotte-Fauconniere_reconstr; Gruta-do-Carreiro-Maldito_reconstr; Gulf-of-Naples_reconstr; Habitat; Hvar_reconstr; LATITUDE; Le-Petit-Conglue_reconstr; LONGITUDE; Name; Reference/source; Sagres_reconstr; Sampling date; South Atlantic Ocean; Species; SponGES; Station label; Strazica_Velebit-Ch; Tirreno Sea; Tremiti-Is_reconstr; Type; Western Basin
    Type: Dataset
    Format: text/tab-separated-values, 197 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 2
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    Lithistids from the Seamounts of the Northeast Atlantic Ocean (2018)
    PANGAEA
    Details
    Publication Date: 2023-02-24
    Description: Supplementary Material 1: List of specimens analysed in this study with detailed information of the stations in which they were sampled. All specimens are deposited in the MNHN Paris.
    Keywords: Area/locality; BD; BEAM; Beam trawl; BIO; Biology; Campaign; Code; CP11; CP138; CP144; CP156; CP20; CP257; CP28; DATE/TIME; DE140; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Description; Device type; Dredge, benthos; DW128; DW129; DW130; DW139; DW148; DW159; DW16; DW182; DW184; DW188; DW202; DW203; DW21; DW241; DW242; DW246; DW247; DW25; DW254; DW258; DW263; DW265; DW27; DW274; DW277; DW279; DW281; DW63; EBS; Epibenthic sledge; Event label; Latitude of event; Le Noroit; Le Suroît; Longitude of event; marine sponges; Nor_CP11; Nor_CP20; Nor_CP28-1; Nor_CP28-2; Nor_CP99; Nor_DW16; Nor_DW21; Nor_DW25; Nor_DW27; Nor_DW63; Noroit_1988-09; Number of individuals; Species; Sponges; SponGES; Station label; Sur_CP138; Sur_CP144; Sur_CP156; Sur_CP257; Sur_DE140; Sur_DW128; Sur_DW129; Sur_DW130; Sur_DW139; Sur_DW148; Sur_DW159; Sur_DW182; Sur_DW184-2; Sur_DW188; Sur_DW202; Sur_DW203; Sur_DW241; Sur_DW242; Sur_DW246; Sur_DW247; Sur_DW254; Sur_DW258-1; Sur_DW258-2; Sur_DW263; Sur_DW265; Sur_DW274; Sur_DW277; Sur_DW279; Sur_DW281; Suroit_1993-01; Vessel
    Type: Dataset
    Format: text/tab-separated-values, 628 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 3
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    Collection data of Tethya irisae sp. nov. and comparative material (2018)
    PANGAEA
    In:  Supplement to: Sorokin, Shirley J; Ekins, Merrick; Yang, Qi; Cárdenas, Paco (2019): A new deep-water Tethya (Porifera, Tethyida, Tethyidae) from the Great Australian Bight and an updated Tethyida phylogeny. European Journal of Taxonomy, 529, https://doi.org/10.5852/ejt.2019.529
    Details
    Publication Date: 2023-07-17
    Description: A new species of Tethya irisae sp. nov. is described from 1000 m depth on the continental slope of the Great Australian Bight (GAB), southern Australia. Three molecular markers were obtained from one specimen: COI, 28S (D3-D5) and ITS1-5.8S-ITS2.
    Keywords: Accession number, genetics; Andaman Sea; Area/locality; BEAM; Beam trawl; BIO; Biology; BMNH1957_7_15_1; BPZ_1000; Collection; Comment; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; G_9069; Great Australian Bight; IN2015_C01; IN2015_C01_110; IN2015_C01_114; IN2015_C02; IN2015_C02_131; IN2015_C02_167; IN2015_C02_196; IN2015_C02_292; Investigator (2014); LATITUDE; LONGITUDE; Name; New South Wales, Australia; New Zealand; Reference/source; Species; SponGES; Station label; Type; UAZA9_7; UAZA9_8; Z5074
    Type: Dataset
    Format: text/tab-separated-values, 98 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 4
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    Supplementary information and georeferenced photomosaic of the Chapopote bubble site during RV METEOR cruise M114/2 (2019)
    PANGAEA
    In:  Supplement to: Rubin-Blum, Maxim; Antony, Chakkiath Paul; Sayavedra, Lizbeth; Martínez-Pérez, Clara; Birgel, Daniel; Peckmann, Jörn; Wu, Yu-Chen; Cárdenas, Paco; MacDonald, Ian R; Marcon, Yann; Sahling, Heiko; Hentschel, Ute; Dubilier, Nicole (2019): Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts. The ISME Journal, https://doi.org/10.1038/s41396-019-0346-7
    Details
    Publication Date: 2023-11-20
    Description: Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea.
    Keywords: asphalt; Center for Marine Environmental Sciences; Chapopote; Gulf of Mexico; LAPM; MARUM; Mosaic; Photomosaic; seep; TAR
    Type: Dataset
    Format: application/zip, 2 datasets
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 5
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    Supplementary information (2019)
    PANGAEA
    Details
    Publication Date: 2023-11-20
    Keywords: asphalt; Center for Marine Environmental Sciences; Chapopote; File content; File format; File name; File size; Gulf of Mexico; LAPM; MARUM; Mosaic; Photomosaic; seep; TAR; Uniform resource locator/link to file
    Type: Dataset
    Format: text/tab-separated-values, 20 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 6
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    Collecting information and identification of New England Seamount Geodia species (2016)
    PANGAEA
    In:  Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3
    Details
    Publication Date: 2024-03-03
    Description: We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA.
    Keywords: Alv_3886; Alv_3904; ALV-3885; ALV-3887; ALV-4162; ALVIN; Area/locality; AT07-35; AT08-01; AT12-01; Atlantis (1997); Campaign; Collection; DATE/TIME; DE00-11; DE00-11_17; DE02-06; DE02-06_46; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; Delaware II; Description; Event label; Identification; Investigator; LATITUDE; LONGITUDE; New England Mountains; Norway; OT; Otter trawl; RB04-04_MAN708; RB200404B; Remote operated vehicle; Ronald H. Brown; ROV; Sample comment; Sample elevation; South Atlantic Ocean; Species; SponGES; Submersible Alvin; Treatment; Uniform resource locator/link to metadata file; Vikna_Is
    Type: Dataset
    Format: text/tab-separated-values, 95 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 7
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    Collection data and Genbank accession numbers of Stelligeridae revision (2019)
    PANGAEA
    In:  Supplement to: Morrow, Christine; Cárdenas, Paco; Boury-Esnault, Nicole; Picton, Bernard; McCormack, Grace; van Soest, Rob; Collins, Allen; Redmond, Niamh; Maggs, Christine; Sigwart, Julia D; Allcock, Louise (2019): Integrating morphological and molecular taxonomy with the revised concept of Stelligeridae (Porifera: Demospongiae). Zoological Journal of the Linnean Society, zlz017, https://doi.org/10.1093/zoolinnean/zlz017
    Details
    Publication Date: 2024-01-27
    Description: Collection data and Genbank accession numbers of demosponge specimens studied by Morrow et al. It includes species belonging to several families: Stelligeridae mainly but also some Heteroxyidae, Bubaridae, Desmoxyidae, Hymedesmiidae and Hemiasterallidae. These species come essentially from the North Atlantic (shallow and deep waters), with a few coming from the Indian Ocean and the Pacific.
    Keywords: 64PE229; 64PE229_BX30; 64PE229_BX33A; 64PE229_BX42A; 64PE238; 64PE238_BX173; Accession number, genetics; Antea; Area/locality; ARK-XXII/1a; Barents Sea; Bay of Biscay; BC; BIOMAGLO; BIOMAGLO_DW4812; BIOSYS/HERMES; BIOSYS2006_VG20-1/11; Box corer; Burma Sea, Andaman Sea; Calypso; CALYPSO_1954; Campaign; CE10004; CE10004_108; CE10004_7; CE10004_70; CE13008; CE13008_15; CE13008_36; CE13008_37; Celtic Explorer; Celtic Sea; Collection; Coral Sea; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Device type; DIVER; Dredge; DRG; EBS; English Channel; Epibenthic sledge; Family; Gulf of Aden; Gulf of Carpentaria; GuyanaShelfExp; GuyanaShelfExp_M97; HAND; Indian Ocean; Investigator; Irish Sea; JAGO; Jenissej_1875_st30a; L Atalante; LATITUDE; Ligure Sea; LONGITUDE; Luymes; Moundforce_2004_43; Moundforce 2004; North Sea; Norwegian Sea; PAMELA-MOZ01; PAMELA-MOZ01_DW01; PAoM_1895_578; PAoM_1895_584; PAoM_1895_597; PAoM_1895_616; PAoM_1896_702; PAoM_1896_719; PAoM_1897_869; PAoM_1897_899; PAoM_1901_1116; PAoM_1901_1242; PAoM_1902_1338; PAoM_1902_1344; PAoM_1902_1349; PAoM_1902_1420; PAoM_1905_2034; PAoM_1905_2210; PAoM_1911_3137; PAoM_1911_3144; PAoM_1911_3150; Pelagia; Polarstern; Porcupine_1868; PS70; PS70/014-4; PS70/017-1; PS70/040-10; Reference/source; Remote operated vehicle; ROV; Sample comment; Sampling by diver; Sampling by hand; Scotland Sea; SCUBA_1981-07-04; SCUBA_1982-06-08; SCUBA_1982-06-15; SCUBA_1983-07-21; SCUBA_1985; SCUBA_2005-09-06; SCUBA_2006-08-25; SCUBA_2007-04-10; SCUBA_2008-02-14_St1; SCUBA_2008-06-24; SCUBA_2008-06-30; SCUBA_2008-07-02; SCUBA_2009-07-29; SCUBA_2009-08-03; SCUBA_2009-08-04; SCUBA_2010-06-23; SCUBA_2010-06-28; SCUBA_2018-03-28; Sealark_1905-07-03; Sealark_1905-10-20; Skagerrak; South Atlantic Ocean; South Pacific Ocean; Species; SponGES; Submersible JAGO; Surface description; Tirreno Sea; TRAWL; Trawl net; Type; Unknown_1884_PortPhillipH; Unknown_1933-10-12; Unknown_1960_st41; Unknown_1960_st57; Unknown_1977-06-02_st181; Unknown_1994-09-02; Unknown_2003-05-24; Unknown_2008-06-24; Unknown_2009-07-30; Unknown_2010-09-07; Unknown_Banyuls; Unknown_Boue_Tirlipois; Unknown_CALYPSO_1954; Unknown_GalwayBay; Unknown_Glenan; Unknown_Ile-de-Batz; Unknown_Investigator_st532; Unknown_Shetlands; Unknown_Skagerrak; Unknown_SMNH1229; Unknown_Takatu-Pt; Unknown_Trondheim; van Veen Grab; VGRAB; Western Basin
    Type: Dataset
    Format: text/tab-separated-values, 729 data points
    Location Call Number Limitation Availability
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    DATA PANGAEA
  • 8
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    Collection data and Genbank numbers of Lamellomorpha and Poecillastra species from New Zealand (2018)
    PANGAEA
    In:  Supplement to: Kelly, Michelle; Cárdenas, Paco; Rush, Nicola; Sim-Smith, Carina; MacPherson, Diana; Page, Mike; Bell, Lori J (2019): Molecular study supports the position of New Zealand endemic genus Lamellomorpha in family Vulcanellidae (Demospongiae, Tetractinellida, Astrophorina), with the description of three new species. European Journal of Taxonomy, 506, 1-25, https://doi.org/10.5852/ejt.2019.506
    Details
    Publication Date: 2024-05-03
    Description: Collection data and Genbank numbers (COI and 28S (C1-C2)) for New Zealand specimens of Lamellomorpha and Poecillastra studied by Kelly et al.
    Keywords: Accession number, genetics; Area/locality; BP_A714; BP_A715; BP_A751; CH_B184; Collection; DATE/TIME; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Identification; Investigator; KAH0606; KAH0606/D3; Kaharoa; LATITUDE; LONGITUDE; MB_I711; MB_W427; MB_W435; MB_W446; MB_W447; MB_W448; MB_W452; MB_W454; SL_D39; South Pacific Ocean; Species; SponGES; Station label; TAN0803; TAN0803/48; TAN0803/69; TAN1105; TAN1105/43; Tangaroa; Tasman Sea; TKI_B93; TKI_Z15944; TKI_Z9678; TKI_Z9686; TKI_Z9699; TKI_Z9710; TRIP3072/8; Type
    Type: Dataset
    Format: text/tab-separated-values, 267 data points
    Location Call Number Limitation Availability
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  • 9
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    Collection data, 16S microbiome and metabolome of Geodia barretti, Stryphnus fortis and Weberella bursa, in the Davis Strait (2019)
    PANGAEA
    Details
    Publication Date: 2024-05-25
    Description: Collection data of the marine sponge specimens studied; three species: Geodia barretti, Stryphnus fortis and Weberella bursa. Collection data includes locality, depth, salinity, bottom temperature, gear, date, cruise and station# and a collection number for every specimen (DFO Canada collections). NCBI SRA# of the 16S gene amplicon sequencing of their microbiome. Numbers of the UPLC-HRMS runs (four different modes for every specimen: HILIC+, HILIC-, RP+ and RP-). The raw UPLC-HRMS datasets are deposited in the repository metabolights (www.ebi.ac.uk/metabolights/MTBLS1388). QC runs are Quality Control runs for the UPLC-HRMS experiment (also deposited in metabolights).
    Keywords: Accession number, genetics; Code; Cruise/expedition; DATE/TIME; Deep-sea; Deep-sea Sponge Grounds Ecosystems of the North Atlantic; DEPTH, water; Event label; Gear; Geodia barretti; Identification; LATITUDE; LONGITUDE; marine sponges; metabolomics; microbiome; PAA2011007; PAA2011007_Gb10; PAA2011007_Gb15; PAA2011007_Gb20; PAA2011007_Gb21; PAA2011007_Gb4; PAA2011007_Gb6; PAA2011007_Sf11; PAA2011007_Sf14; PAA2011007_Sf4; PAA2011007_Sf7; PAA2011007_Wb10; PAA2011007_Wb12; PAA2011007_Wb14; PAA2011007_Wb15; PAA2011007_Wb2; PAA2011007_Wb5; PAA2011007_Wb9; PAA2013008; PAA2013008_Gb1; PAA2013008_Gb12; PAA2013008_Gb14; PAA2013008_Gb18; PAA2013008_Gb19; PAA2013008_Gb2; PAA2013008_Gb8; PAA2013008_Gb9; PAA2013008_Sf10; PAA2013008_Sf13; PAA2013008_Sf2; PAA2013008_Sf6; PAA2013008_Wb1; PAA2013008_Wb11; PAA2013008_Wb16; PAA2013008_Wb17; PAA2013008_Wb4; PAA2013008_Wb8; PAA2014007; PAA2014007_Gb13; PAA2014007_Gb3; PAA2014007_Gb5; PAA2014007_Sf1; PAA2014007_Sf12; PAA2014007_Sf15; PAA2014007_Sf3; PAA2014007_Sf5; PAA2014007_Wb13; PAA2014007_Wb3; PAA2014007_Wb6; PAA2014007_Wb7; PAA2015007; PAA2015007_Gb11; PAA2015007_Gb17; PAA2015007_Gb7; PAA2015007_Sf8; PAA2015007_Sf9; Paamiut; Salinity; Set; Species; SponGES; Stryphnus fortis; Temperature, water; Weberella bursa; Year of observation
    Type: Dataset
    Format: text/tab-separated-values, 739 data points
    Location Call Number Limitation Availability
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  • 10
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    Fueled by methane: deep-sea sponges from asphalt seeps gain their nutrition from methane-oxidizing symbionts (2019)
    Nature Research
    In:  The ISME Journal, 13 (5). pp. 1209-1225.
    Details
    Publication Date: 2022-01-31
    Description: Sponges host a remarkable diversity of microbial symbionts, however, the benefit their microbes provide is rarely understood. Here, we describe two new sponge species from deep-sea asphalt seeps and show that they live in a nutritional symbiosis with methane-oxidizing (MOX) bacteria. Metagenomics and imaging analyses revealed unusually high amounts of MOX symbionts in hosts from a group previously assumed to have low microbial abundances. These symbionts belonged to the Marine Methylotrophic Group 2 clade. They are host-specific and likely vertically transmitted, based on their presence in sponge embryos and streamlined genomes, which lacked genes typical of related free-living MOX. Moreover, genes known to play a role in host–symbiont interactions, such as those that encode eukaryote-like proteins, were abundant and expressed. Methane assimilation by the symbionts was one of the most highly expressed metabolic pathways in the sponges. Molecular and stable carbon isotope patterns of lipids confirmed that methane-derived carbon was incorporated into the hosts. Our results revealed that two species of sponges, although distantly related, independently established highly specific, nutritional symbioses with two closely related methanotrophs. This convergence in symbiont acquisition underscores the strong selective advantage for these sponges in harboring MOX bacteria in the food-limited deep sea.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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    Format: other
    Format: other
    DOI: 10.1038/s41396-019-0346-7
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    OceanRep: Article in a Scientific Journal - peer-reviewed
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