Description: The importance of macrobenthos in benthic‐pelagic coupling and early diagenesis of organic carbon (OC) has long been recognized but has not been quantified at a regional scale. By using the southern North Sea as an exemplary area we present a modelling attempt to quantify the budget of total organic carbon (TOC) reworked by macrobenthos in seafloor surface sediments. Vertical profiles in sediments collected in the field indicate a significant but nonlinear correlation between TOC and macrobenthic biomass. A mechanistic model is used to resolve the bi‐directional interaction between TOC and macrobenthos. A novelty of this model is that bioturbation is resolved dynamically depending on variations in local food resource and macrobenthic biomass. The model is coupled to 3D hydrodynamic‐biogeochemical simulations to hindcast the mutual dependence between sedimentary TOC and macrobenthos from 1948 to 2015. Agreement with field data reveals a satisfactory model performance. Our simulations show that the preservation of TOC in the North Sea sediments is not only determined by pelagic conditions (hydrodynamic regime and primary production) but also by the vertical distribution of TOC, bioturbation intensity, and the vertical positioning of macrobenthos. Macrobenthos annually ingest 20%–35% and in addition vertically diffuse 11%–22% of the total budget of TOC in the upper‐most 30 cm sediments in the southern North Sea. This result indicates a central role of benthic animals in modulating the OC cycling at the sediment‐water interface of continental margins.

Description: Biogeochemical cycles of carbon, nutrients, and oxygen transmit mean states, trends and variations of the physical realm in coastal upwelling systems to their food webs and determine their role in regional budgets of greenhouse gases. This contribution focuses on biogeochemical processes in the northern Benguela Upwelling System (NBUS), where low oxygen levels in upwelling source water are a major influence on carbon and nutrient cycles. Based on measurements during numerous expeditions and results of 3-D regional ecosystem modeling (project GENUS; Geochemistry and Ecology of the Namibian Upwelling System) we here examine source water character, effects of low oxygen conditions on nutrient masses and ratios, and of diazotrophic N2-fixation on productivity of the system and its transition to the adjacent eastern South Atlantic. In available observations, the effects of denitrification in water and sediment and phosphate release from sediments are minor influences on nitrate:phosphate ratios of the system, and excess phosphate in aged upwelling water is inherited from upwelling source water. Contrary to expectation and model results, the low N:P ratios do not trigger diazotrophic N2-fixation in the fringes of the upwelling system, possibly due to a lack of seeding populations of Trichodesmium. We also examine the flux of carbon from the sea surface to either sediment, the adjacent sub-thermocline ocean, or to regenerated nutrients and CO2. Observed fluxes out of the surface mixed layer are significantly below modeled fluxes, and suggest that regeneration of nutrients and CO2 is unusually intense in the mixed layer. This contributes to very high fluxes of CO2 from the ocean to the regional atmosphere, which is not compensated for by N2-fixation. Based on observations, the NBUS thus is a significant net CO2 source (estimated at 14.8 Tg C a− 1), whereas the CO2 balance is closed by N2-fixation in the model. Methane concentrations were low in surface waters in on-line measurements during 1 expedition, and based on these our estimate for the emission of methane for the entire Benguela system is below 0.2 Tg CH4 a− 1.