Description: Large amounts of the greenhouse gas methane are released from the seabed to the water column1, where it may be consumed by aerobic methanotrophic bacteria2. The size and activity of methanotrophic communities, which determine the amount of methane consumed in the water column, are thought to be mainly controlled by nutrient and redox dynamics3–7. Here, we report repeated measurements of methanotrophic activity and community size at methane seeps west of Svalbard, and relate them to physical water mass properties and modelled ocean currents. We show that cold bottom water, which contained a large number of aerobic methanotrophs, was displaced by warmer water with a considerably smaller methanotrophic community within days. Ocean current simulations using a global ocean/sea-ice model suggest that this water mass exchange is consistent with short-term variations in the meandering West Spitsbergen Current. We conclude that the shift from an offshore to a nearshore position of the current can rapidly and severely reduce methanotrophic activity in the water column. Strong fluctuating currents are common at many methane seep systems globally, and we suggest that they affect methane oxidation in the water column at other sites, too.

Description: The Agulhas Current, the western boundary current of the South Indian Ocean, has been shown to play an important role in the connectivity between the Indian and Atlantic oceans. The greater Agulhas Current system is highly dominated by mesoscale dynamics. To investigate their influence on the regional and global circulations, a family of high-resolution ocean general circulation model configurations based on the NEMO code has been developed. Horizontal resolution refinement is achieved by embedding “nests” covering the South Atlantic and the western Indian oceans at 1/10∘ (INALT10) and 1/20∘ (INALT20) within global hosts with coarser resolutions. Nests and hosts are connected through two-way interaction, allowing the nests not only to receive boundary conditions from their respective host but also to feed back the impact of regional dynamics onto the global ocean. A double-nested configuration at 1/60∘ resolution (INALT60) has been developed to gain insights into submesoscale processes within the Agulhas Current system. Large-scale measures such as the Drake Passage transport and the strength of the Atlantic meridional overturning circulation are rather robust among the different configurations, indicating the important role of the hosts in providing a consistent embedment of the regionally refined grids into the global circulation. The dynamics of the Agulhas Current system strongly depend on the representation of mesoscale processes. Both the southward-flowing Agulhas Current and the northward-flowing Agulhas Undercurrent increase in strength with increasing resolution towards more realistic values, which suggests the importance of improving mesoscale dynamics as well as bathymetric slopes along this narrow western boundary current regime. The exploration of numerical choices such as lateral boundary conditions and details of the implementation of surface wind stress forcing demonstrates the range of solutions within any given configuration.