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  • 1
    In: Endoscopy, Georg Thieme Verlag KG, Vol. 54, No. 06 ( 2022-06), p. 565-570
    Abstract: Background Following endoscopic resection of early-stage Barrett’s esophageal adenocarcinoma (BEA), further oncologic management then fundamentally relies upon the accurate assessment of histopathologic risk criteria, which requires there to be sufficient amounts of submucosal tissue in the resection specimens. Methods In 1685 digitized tissue sections from endoscopic mucosal resection (EMR) or endoscopic submucosal dissection (ESD) performed for 76 early BEA cases from three experienced centers, the submucosal thickness was determined, using software developed in-house. Neoplastic lesions were manually annotated. Results No submucosa was seen in about a third of the entire resection area (mean 33.8 % [SD 17.2 %]), as well as underneath cancers (33.3 % [28.3 %] ), with similar results for both resection methods and with respect to submucosal thickness. ESD results showed a greater variability between centers than EMR. In T1b cancers, a higher rate of submucosal defects tended to correlate with R1 resections. Conclusion The absence of submucosa underneath about one third of the tissue of endoscopically resected BEAs should be improved. Results were more center-dependent for ESD than for EMR. Submucosal defects can potentially serve as a parameter for standardized reports.
    Type of Medium: Online Resource
    ISSN: 0013-726X , 1438-8812
    RVK:
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    Language: English
    Publisher: Georg Thieme Verlag KG
    Publication Date: 2022
    detail.hit.zdb_id: 2026213-9
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  • 2
    In: Alternatives to Laboratory Animals, SAGE Publications, Vol. 50, No. 2 ( 2022-03), p. 90-120
    Abstract: Public awareness and discussion about animal experiments and replacement methods has greatly increased in recent years. The term ‘the Three Rs’, which stands for the Replacement, Reduction and Refinement of animal experiments, is inseparably linked in this context. A common goal within the Three Rs scientific community is to develop predictive non-animal models and to better integrate all available data from in vitro, in silico and omics technologies into regulatory decision-making processes regarding, for example, the toxicity of chemicals, drugs or food ingredients. In addition, it is a general concern to implement (human) non-animal methods in basic research. Toward these efforts, there has been an ever-increasing number of Three Rs centres and platforms established over recent years — not only to develop novel methods, but also to disseminate knowledge and help to implement the Three Rs principles in policies and education. The adoption of Directive 2010/63/EU on the protection of animals used for scientific purposes gave a strong impetus to the creation of Three Rs initiatives, in the form of centres and platforms. As the first of a series of papers, this article gives an overview of the European Three Rs centres and platforms, and their historical development. The subsequent articles, to be published over the course of ATLA’s 50th Anniversary year, will summarise the current focus and tasks as well as the future and the plans of the Three Rs centres and platforms. The Three Rs centres and platforms are very important points of contact and play an immense role in their respective countries as ‘on the ground’ facilitators of Directive 2010/63/EU. They are also invaluable for the widespread dissemination of information and for promoting implementation of the Three Rs in general.
    Type of Medium: Online Resource
    ISSN: 0261-1929 , 2632-3559
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2022
    detail.hit.zdb_id: 2390905-5
    SSG: 12,22
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  • 3
    In: Alternatives to Laboratory Animals, SAGE Publications, Vol. 50, No. 6 ( 2022-11), p. 381-413
    Abstract: The adoption of Directive 2010/63/EU on the protection of animals used for scientific purposes has given a major push to the formation of Three Rs initiatives in the form of centres and platforms. These centres and platforms are dedicated to the so-called Three Rs, which are the Replacement, Reduction and Refinement of animal use in experiments. ATLA’s 50th Anniversary year has seen the publication of two articles on European Three Rs centres and platforms. The first of these was about the progressive rise in their numbers and about their founding history; this second part focuses on their current status and activities. This article takes a closer look at their financial and organisational structures, describes their Three Rs focus and core activities (dissemination, education, implementation, scientific quality/translatability, ethics), and presents their areas of responsibility and projects in detail. This overview of the work and diverse structures of the Three Rs centres and platforms is not only intended to bring them closer to the reader, but also to provide role models and show examples of how such Three Rs centres and platforms could be made sustainable. The Three Rs centres and platforms are very important focal points and play an immense role as facilitators of Directive 2010/63/EU ‘on the ground’ in their respective countries. They are also invaluable for the wide dissemination of information and for promoting the implementation of the Three Rs in general.
    Type of Medium: Online Resource
    ISSN: 0261-1929 , 2632-3559
    Language: English
    Publisher: SAGE Publications
    Publication Date: 2022
    detail.hit.zdb_id: 2390905-5
    SSG: 12,22
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  • 4
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2022
    In:  Symbiosis Vol. 87, No. 3 ( 2022-07), p. 189-199
    In: Symbiosis, Springer Science and Business Media LLC, Vol. 87, No. 3 ( 2022-07), p. 189-199
    Abstract: The family Lamippidae (Cyclopoida) are endosymbionts mainly occurring in shallow water octocorals and records from deep-sea corals are few. Here we investigated the relationship between the lamippid Gorgonophilus canadensis Buhl-Mortensen & Mortensen, 2004 and its host the deep-sea coral Paragorgia arborea . Twenty-one specimens of G. canadensis was found inside eight gall-like structures on a P. arborea colony collected in 2010 at 318 m depth off Norway. The galls contained on average 1.6 females, 1.0 males, and 7.5 egg sacs estimated to contain 400 eggs each. Females were larger than males (4.6 mm compared to 2.0 mm). The gall volume increased with the number of egg sacs, females, and the length of females inside, the latter correlation was significant ( p   〈  0.05). The number of egg sacs in galls was positively correlated with the abundance and length of females ( p   〈  0.05), and by adding Canadian data from 17 galls the relation between egg sacs and numbers of females and males in galls became stronger ( p   〈  0.01 and p   〈  0.05, respectively). Scanning electron microscopy revealed that this highly modified endoparasite has thoracic appendages with non-segmented flexible spines with a specialized structure at their tips through which threads are excreted. We speculate that this adaptation could relate to feeding or attachment of egg sacs inside the galls. Thread production has rarely been reported for copepods and we explore its function in the group as well as other crustaceans. The age and size of the parasite, and the introduction to and release from the host is also discussed.
    Type of Medium: Online Resource
    ISSN: 0334-5114 , 1878-7665
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 2535332-9
    SSG: 12
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  • 5
    In: Journal of Molluscan Studies, Oxford University Press (OUP), Vol. 87, No. 4 ( 2021-10-04)
    Abstract: To investigate the conspecificity of different morphotypes of Jorunna tomentosa (Cuvier, 1804) (type species of genus Jorunna Bergh, 1876), we studied specimens sampled from across part of the geographical distribution of the species, using a combination of morphoanatomical characters and molecular phylogenetics. Bayesian and maximum likelihood phylograms were inferred based on the mitochondrial genes cytochrome c oxidase subunit I (COI) and 16S ribosomal RNA, and the nuclear gene histone H3. We used the automatic barcode gap discovery method to aid in species delimitation. COI genetic uncorrected p-distances were estimated between and within species. Animals were dissected and the reproductive system, radulae and labial cuticles were examined; scanning electron microscopy was employed to study ultrastructural elements of anatomical characters. The results revealed the presence of a new species (Jorunna artsdatabankia n. sp.) and a possible case of incipient speciation in J. tomentosa with our COI data indicating the presence of two morphoanatomically indistinct lineages that are separated from each other by distances of 3.2–5.0%. The genetic distance between J. artsdatabankia n. sp. and its sister species J. tomentosa was 9.0–12.3%; the former species is characterized by a plain white to yellow background colour with irregularly placed small brown spots, smooth radular teeth and a longer vas deferens, wider vagina and a longer copulatory spine (up to 600 μm longer) than the latter. A diagnostic comparison of all species of European Jorunna is included, as well as a discussion of the assignment of J. lemchei to the genus Gargamella.
    Type of Medium: Online Resource
    ISSN: 0260-1230 , 1464-3766
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2021
    detail.hit.zdb_id: 1482517-X
    SSG: 12
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  • 6
    In: Brain, Oxford University Press (OUP), Vol. 144, No. 2 ( 2021-03-03), p. 584-600
    Abstract: The extracellular matrix comprises a network of macromolecules such as collagens, proteoglycans and glycoproteins. VWA1 (von Willebrand factor A domain containing 1) encodes a component of the extracellular matrix that interacts with perlecan/collagen VI, appears to be involved in stabilizing extracellular matrix structures, and demonstrates high expression levels in tibial nerve. Vwa1-deficient mice manifest with abnormal peripheral nerve structure/function; however, VWA1 variants have not previously been associated with human disease. By interrogating the genome sequences of 74 180 individuals from the 100K Genomes Project in combination with international gene-matching efforts and targeted sequencing, we identified 17 individuals from 15 families with an autosomal-recessive, non-length dependent, hereditary motor neuropathy and rare biallelic variants in VWA1. A single disease-associated allele p.(G25Rfs*74), a 10-bp repeat expansion, was observed in 14/15 families and was homozygous in 10/15. Given an allele frequency in European populations approaching 1/1000, the seven unrelated homozygote individuals ascertained from the 100K Genomes Project represents a substantial enrichment above expected. Haplotype analysis identified a shared 220 kb region suggesting that this founder mutation arose & gt;7000 years ago. A wide age-range of patients (6–83 years) helped delineate the clinical phenotype over time. The commonest disease presentation in the cohort was an early-onset (mean 2.0 ± 1.4 years) non-length-dependent axonal hereditary motor neuropathy, confirmed on electrophysiology, which will have to be differentiated from other predominantly or pure motor neuropathies and neuronopathies. Because of slow disease progression, ambulation was largely preserved. Neurophysiology, muscle histopathology, and muscle MRI findings typically revealed clear neurogenic changes with single isolated cases displaying additional myopathic process. We speculate that a few findings of myopathic changes might be secondary to chronic denervation rather than indicating an additional myopathic disease process. Duplex reverse transcription polymerase chain reaction and immunoblotting using patient fibroblasts revealed that the founder allele results in partial nonsense mediated decay and an absence of detectable protein. CRISPR and morpholino vwa1 modelling in zebrafish demonstrated reductions in motor neuron axonal growth, synaptic formation in the skeletal muscles and locomotive behaviour. In summary, we estimate that biallelic variants in VWA1 may be responsible for up to 1% of unexplained hereditary motor neuropathy cases in Europeans. The detailed clinical characterization provided here will facilitate targeted testing on suitable patient cohorts. This novel disease gene may have previously evaded detection because of high GC content, consequential low coverage and computational difficulties associated with robustly detecting repeat-expansions. Reviewing previously unsolved exomes using lower QC filters may generate further diagnoses.
    Type of Medium: Online Resource
    ISSN: 0006-8950 , 1460-2156
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    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2021
    detail.hit.zdb_id: 1474117-9
    SSG: 12
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