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  • Aragonite saturation; Atlantic_RCP2.6_4.5_8.5; Atlantic Ocean; Binary Object; Binary Object (File Size); Climate change data-layers; File content; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Model; O2; pH; POC flux; RCP2.6; RCP4.5; RCP8.5; Temperature  (1)
  • Biomarker  (1)
  • abyssal plain; ADCP data; AKS296; AKS298; AKS299; AKS301; AKS303; AKS305; AKS308; AKS311; BAIT-ADCP; baited camera lander; Baited camera lander with ADCP; Binary Object; Binary Object (File Size); Binary Object (Media Type); bottom current; Bounding box, x1; Bounding box, x2; Bounding box, x3; Bounding box, x4; Bounding box, y1; Bounding box, y2; Bounding box, y3; Bounding box, y4; Cabo Verde; Event label; Field experiment; File name; iAtlantic; Identification; Image analysis; iMirabilis2_Leg1; iMirabilis2_Leg1_11_AKS296; iMirabilis2_Leg1_19_AKS298; iMirabilis2_Leg1_26_AKS299; iMirabilis2_Leg1_36_AKS301; iMirabilis2_Leg1_47_AKS303; iMirabilis2_Leg1_57_AKS305; iMirabilis2_Leg1_73_AKS308; iMirabilis2_Leg1_79_AKS311; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; photographs; Sarmiento de Gamboa; scavenging; ship-based; Taxon/taxa; Taxon/taxa, unique identification (Semantic URI); Taxon/taxa, unique identification (URI); Taxonomic hierarchy; Taxonomist  (1)
  • 2020-2024  (3)
Document type
Keywords
Publisher
Years
  • 2020-2024  (3)
Year
  • 1
    Publication Date: 2024-04-20
    Description: The data layers provided show current values for seawater temperature, pH, calcite and aragonite saturation (%), oxygen concentration, and particulate organic carbon (POC) flux to the seafloor at different depths (500, 1000, 2000, 3000, and 4000m) at the present day (1951-2000) and changes in these variables expected between 2041-2060 and 2081-2100 under different RCP scenarios. The data layers were generated following the methods described in Levin et al. (2020). In short, in 2019, we obtained the present day and future ocean projections for the different years which were compiled from all available data generated by Earth Systems Models as part of the Coupled Model Inter-comparison Project Phase 5 (CMIP5) to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change. Three Earth System Models, including GFDL‐ESM‐2G, IPSL‐CM5A‐MR, and MPI‐ESM‐MR were collected and multi-model averages of temperature, pH, O2 , export production at 100-m depth (epc100), carbonate ion concentration (co3), and carbonate ion concentration for seawater in equilibrium with aragonite (co3satarg) and calcite (co3satcalc) were calculated. The epc100 was converted to export POC flux at the seafloor using the Martin curve (Martin et al., 1987) following the equation: POC flux = export production*(depth/export depth)0.858. The export depth was set to 100 m, and the water depth using the ETOPO1 Global Relief Model (Amante and Eakins, 2008). Seafloor aragonite and calcite saturation were computed by dividing co3 by co3satarg and co3satcalc. All variableswere reported as the inter-annual mean projections between 1951-2000, 2041-2060, and 2081-2100. The data for calcite and aragonite saturation can be found in Morato et al. (2020).
    Keywords: Aragonite saturation; Atlantic_RCP2.6_4.5_8.5; Atlantic Ocean; Binary Object; Binary Object (File Size); Climate change data-layers; File content; iAtlantic; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; Model; O2; pH; POC flux; RCP2.6; RCP4.5; RCP8.5; Temperature
    Type: Dataset
    Format: text/tab-separated-values, 6 data points
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2024-04-20
    Description: A total of eight deployments of an autonomous baited camera lander were conducted at the Cabo Verde Abyssal Plain (tropical East Atlantic, Lat. 14.72, Lon. -25.19, Water depth ~4200 m) using either Atlantic mackerel (Scomber scombrus, n=4) or Patagonian squid (Doryteuthis gahi, n=4) bait, to photograph organisms attracted to the bait over roughly 24 hours. The deployments took place during the iMirabilis2 campaign in August 2021 from the research vessel Sarmiento de Gamboa. A deep-sea time lapse camera system with an oblique view of the bait plate (12 cm x 45 cm) and surroundings took a picture every 150 seconds. The bar attached to the bait plate is 6 cm wide. The camera was located about 120 cm above the seafloor with an oblique view of 40 degrees (assuming straight down in 0 degrees). Annotations were performed in BIIGLE software (Langenkämper et al. 2017) on every second photograph, providing the morphospecies group label (or 'No ID' if to morphospecies level was not possible) and the taxonomic hierarchy to a level of best confidence for each annotation. Annotations were rectangular in shape, enclosing each individual so that the centre of the annotation was roughly the centre of mass, and the points of each rectangle corner are provided in pixels (x,y) where the lower left corner of the picture is 0,0. Images were 6000 pixels in width and 4000 pixels in height.
    Keywords: abyssal plain; ADCP data; AKS296; AKS298; AKS299; AKS301; AKS303; AKS305; AKS308; AKS311; BAIT-ADCP; baited camera lander; Baited camera lander with ADCP; Binary Object; Binary Object (File Size); Binary Object (Media Type); bottom current; Bounding box, x1; Bounding box, x2; Bounding box, x3; Bounding box, x4; Bounding box, y1; Bounding box, y2; Bounding box, y3; Bounding box, y4; Cabo Verde; Event label; Field experiment; File name; iAtlantic; Identification; Image analysis; iMirabilis2_Leg1; iMirabilis2_Leg1_11_AKS296; iMirabilis2_Leg1_19_AKS298; iMirabilis2_Leg1_26_AKS299; iMirabilis2_Leg1_36_AKS301; iMirabilis2_Leg1_47_AKS303; iMirabilis2_Leg1_57_AKS305; iMirabilis2_Leg1_73_AKS308; iMirabilis2_Leg1_79_AKS311; Integrated Assessment of Atlantic Marine Ecosystems in Space and Time; photographs; Sarmiento de Gamboa; scavenging; ship-based; Taxon/taxa; Taxon/taxa, unique identification (Semantic URI); Taxon/taxa, unique identification (URI); Taxonomic hierarchy; Taxonomist
    Type: Dataset
    Format: text/tab-separated-values, 572275 data points
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2024-05-01
    Description: Given the go ahead, deep-sea mining operations are likely to continue for decades on a substantial spatial scale and the resulting sediment plumes combined, are likely to extend beyond the licenced mining areas, and could lead to the chronic exposure of deep-sea organisms to a mixture of metals, even mobile species, such as fish, that could conceivably display avoidance behaviour. The metal concentrations, often substantially below lethal doses, mean that individual mortality is too blunt a measure to allow assessment of “serious harm”. Commonly used cellular biomarkers of exposure in ecotoxicology include DNA damage using the Comet assay. True deep-sea ecotoxicological studies with fish are rare and to our knowledge, there are no published data or method optimizations for deep-sea fish. Coryphaenoides ssp. were collected during SMARTEX expedition 1 (Feb/Mar, 2023) to the Clarion Clipperton Zone (CCZ) in the Eastern Pacific Ocean using a baited trap deployed between 4580–4,732m depth for 24–48 h. Blood and gill tissue were removed and processed for the Comet assay. In order to reduce artefactual DNA damage from cryopreservation observed previously, two sets of samples were prepared: a cryopreservative (10% DMSO) was added to one set of samples and stored at − 80 ◦C; the second set was used to perform a Comet assay within hours of collection. A custom-built gimble table enabled horizontal electrophoresis at sea after which Comet assay slides were dried and stored at room temperature until further analysis. The Comet assay was also assessed in freshly sampled and frozen rainbow trout cells as a proxy control in order to evaluate potential artefacts from the collection and sampling procedure of the deep-sea fish. The blood samples processed at sea had a significantly reduced level of DNA damage compared to the frozen samples. There was no significant difference between the fresh deep-sea and rainbow trout samples. However, the freshly prepared gill samples in Coryphaenoides ssp. showed substantial artefacts, possibly as a consequence of barotrauma. These results represent the first effort at establishing baseline DNA damage data for deep-sea fish, an essential component in understating and quantifying the impact of deep-sea mining.
    Description: Published
    Description: Refereed
    Keywords: Ecotoxicology ; DNA damage ; Genotoxicology ; Biomarker
    Repository Name: AquaDocs
    Type: Journal Contribution
    Format: 8pp.
    Location Call Number Limitation Availability
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