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  • PANGAEA  (64)
  • MDPI  (1)
  • 2020-2024  (65)
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  • 1
    Publication Date: 2023-07-14
    Description: We analysed water samples taken during the Polarstern PS113 cruise with HPLC technique to retrieve phytoplankton pigment concentrations. We further used these data to obtain major phytoplankton groups following the diagnostic pigment analysis. We also measured at discrete light stations (called Lightstations) and from an undulating platform towed behind the ship (called TRIAXUS stations) radiometric underwater light profiles high spectrally resolved. We obtained high resolution phytoplankton group Chla data from depth resolved apparent optical properties derived from the underwater radiation data by applying an empirical orthogonal function (EOF) analysis to the spectral data set and developing subsequently regression models using the pigment based phytoplankton group Chla and the selected EOF modes. Results were obtained from using depth resolved transmission data (Transmission) and also from using the mean diffuse attenuation over the first optical depth (kdmean) of the measured radiometric profile. All the details are described in the related publication by Bracher et al. (2020).
    Keywords: Atlantic Ocean transect; diagnostic pigment analysis; HPLC analysis; particulate matter; phytoplankton pigment concentrations phytoplankton groups; radiometric profiles
    Type: Dataset
    Format: application/zip, 4 datasets
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2024-02-14
    Description: This data set provides the collocated data of remote sensing reflectance (Rrs) at 9 bands extracted from the merged ocean color products from GlobColour archive (https://www.globcolour.info/), satellite sea surface temperature from CMEMS (https://marine.copernicus.eu/), and chlorophyll a concentrations (Chl-a) derived from a global database of in situ HPLC pigment data collected from 2002 to 2012. The total Chl-a, Chl-a of six phytoplankton functional types (PFTs) that are diatoms, dinoflagellates, haptophytes, green algae, prokaryotes and Prochlorococcus, and two fractions of prokaryotes and Prochlorococcus are included in this data set. PFT Chl-a and fractions are derived using an updated diagnostic pigment analysis (DPA) method (Soppa et al., 2014; Losa et al., 2017), that was originally developed by Vidussi et al. (2001), adapted in Uitz et al. (2006) and further refined by Hirata et al. (2011) and Brewin et al. (2015). Matchups of satellite Rrs to in situ PFT data (which were also matchups to SST) were extracted from global 4-km daily merged products. Extraction and averaging protocol including quality control were described in detail in Xi et al. (2020).
    Keywords: Chlorophyll a; Chlorophyll a, Diatoms; Chlorophyll a, Dinoflagellata; Chlorophyll a, Green algae; Chlorophyll a, Haptophyta; Chlorophyll a, Prochlorococcus; Chlorophyll a, Prokaryotes; Chlorophyll a, total; DATE/TIME; DEPTH, water; GlobColour; LATITUDE; LONGITUDE; ocean color; OLCI-PFT; ORDINAL NUMBER; particulate matter; PFT; Prochlorococcus, fractional; Prokaryotes, fractional; Remote sensing reflectance at 412 nm; Remote sensing reflectance at 443 nm; Remote sensing reflectance at 490 nm; Remote sensing reflectance at 510 nm; Remote sensing reflectance at 531 nm; Remote sensing reflectance at 547 nm; Remote sensing reflectance at 555 nm; Remote sensing reflectance at 670 nm; Remote sensing reflectance at 678 nm; Rrs; Sea surface temperature; SST
    Type: Dataset
    Format: text/tab-separated-values, 9015 data points
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2024-06-25
    Description: Samples for the pigment data set were collected during RV Maria S. Merian cruise MSM9/1 in July/August 2008 in the North Atlantic from Bremen, Germany to St. John's, Newfoundland, Canada (see cruise report Kucera et al. 2014). Sampling was conducted at various stations from a rosette coupled to a conductivity temperature density (CTD) profiler at three to four depths and otherwise sampling regularly every 6 to 8 hours the surface water (approx. 10 m depth) from the ship's moonpool. Water samples were filtered on GF/F filters. Filters were immediately shockfrozen in liquid nitrogen and stored at -80°C until further analysis at the laboratories of the Alfred-Wegener-Institute Helmholtz Centre for Polar and Marine Research (AWI). Measurements of the particulate absorption were carried out on a dual-beam UV/VIS spectrophotometer (Cary 4000, Varian Inc.) equipped with a 150 mm integrating sphere (external DRA-900, Varian, Inc. and Labsphere Inc., made from Spectralon (TM)) using a quantitative filterpad technique modified as follows (see e.g. Simis et al., 2005). The filters were placed in the center of the integrating sphere using a center-mount filter holder perpendicular to the light beam. A wavelength scan from 300 to 850 nm with a resolution of 1 nm (slit width 2 nm, scan rate 150 nm min−1 ) was performed, when the reflectance ports were covered with Spectralon(TM) reflectance standards. The baseline was recorded beforehand with a clean, dry filter, and a filter which was soaked for more than 30 min in purified water served as a reference. The absorption coefficient was calculated from optical density (OD) measurements using a path length amplification factor of 4.5 (β = 1/4.5, Taylor et al. 2011) as a [m−1 ] = −ln (T · A · β/V ), where the transmittance T = exp (−OD), V is the filtrated sample volume in m3 and A the filter clearance area in m2 . Results from the original filter gave particulate absorption, ap. More details on the method can be found in Taylor et al. (2011). The data set is also collocated to Bracher and Taylor (2017) phytoplankton pigment data.
    Keywords: absorption; Absorption coefficient, total particulate matter, at 300 nm; Absorption coefficient, total particulate matter, at 301 nm; Absorption coefficient, total particulate matter, at 302 nm; Absorption coefficient, total particulate matter, at 303 nm; Absorption coefficient, total particulate matter, at 304 nm; Absorption coefficient, total particulate matter, at 305 nm; Absorption coefficient, total particulate matter, at 306 nm; Absorption coefficient, total particulate matter, at 307 nm; Absorption coefficient, total particulate matter, at 308 nm; Absorption coefficient, total particulate matter, at 309 nm; Absorption coefficient, total particulate matter, at 310 nm; Absorption coefficient, total particulate matter, at 311 nm; Absorption coefficient, total particulate matter, at 312 nm; Absorption coefficient, total particulate matter, at 313 nm; Absorption coefficient, total particulate matter, at 314 nm; Absorption coefficient, total particulate matter, at 315 nm; Absorption coefficient, total particulate matter, at 316 nm; Absorption coefficient, total particulate matter, at 317 nm; Absorption coefficient, total particulate matter, at 318 nm; Absorption coefficient, total particulate matter, at 319 nm; Absorption coefficient, total particulate matter, at 320 nm; Absorption coefficient, total particulate matter, at 321 nm; Absorption coefficient, total particulate matter, at 322 nm; Absorption coefficient, total particulate matter, at 323 nm; Absorption coefficient, total particulate matter, at 324 nm; Absorption coefficient, total particulate matter, at 325 nm; Absorption coefficient, total particulate matter, at 326 nm; Absorption coefficient, total particulate matter, at 327 nm; Absorption coefficient, total particulate matter, at 328 nm; Absorption coefficient, total particulate matter, at 329 nm; Absorption coefficient, total particulate matter, at 330 nm; Absorption coefficient, total particulate matter, at 331 nm; Absorption coefficient, total particulate matter, at 332 nm; Absorption coefficient, total particulate matter, at 333 nm; Absorption coefficient, total particulate matter, at 334 nm; Absorption coefficient, total particulate matter, at 335 nm; Absorption coefficient, total particulate matter, at 336 nm; Absorption coefficient, total particulate matter, at 337 nm; Absorption coefficient, total particulate matter, at 338 nm; Absorption coefficient, total particulate matter, at 339 nm; Absorption coefficient, total particulate matter, at 340 nm; Absorption coefficient, total particulate matter, at 341 nm; Absorption coefficient, total particulate matter, at 342 nm; Absorption coefficient, total particulate matter, at 343 nm; Absorption coefficient, total particulate matter, at 344 nm; Absorption coefficient, total particulate matter, at 345 nm; Absorption coefficient, total particulate matter, at 346 nm; Absorption coefficient, total particulate matter, at 347 nm; Absorption coefficient, total particulate matter, at 348 nm; Absorption coefficient, total particulate matter, at 349 nm; Absorption coefficient, total particulate matter, at 350 nm; Absorption coefficient, total particulate matter, at 351 nm; Absorption coefficient, total particulate matter, at 352 nm; Absorption coefficient, total particulate matter, at 353 nm; Absorption coefficient, total particulate matter, at 354 nm; Absorption coefficient, total particulate matter, at 355 nm; Absorption coefficient, total particulate matter, at 356 nm; Absorption coefficient, total particulate matter, at 357 nm; Absorption coefficient, total particulate matter, at 358 nm; Absorption coefficient, total particulate matter, at 359 nm; Absorption coefficient, total particulate matter, at 360 nm; Absorption coefficient, total particulate matter, at 361 nm; Absorption coefficient, total particulate matter, at 362 nm; Absorption coefficient, total particulate matter, at 363 nm; Absorption coefficient, total particulate matter, at 364 nm; Absorption coefficient, total particulate matter, at 365 nm; Absorption coefficient, total particulate matter, at 366 nm; Absorption coefficient, total particulate matter, at 367 nm; Absorption coefficient, total particulate matter, at 368 nm; Absorption coefficient, total particulate matter, at 369 nm; Absorption coefficient, total particulate matter, at 370 nm; Absorption coefficient, total particulate matter, at 371 nm; Absorption coefficient, total particulate matter, at 372 nm; Absorption coefficient, total particulate matter, at 373 nm; Absorption coefficient, total particulate matter, at 374 nm; Absorption coefficient, total particulate matter, at 375 nm; Absorption coefficient, total particulate matter, at 376 nm; Absorption coefficient, total particulate matter, at 377 nm; Absorption coefficient, total particulate matter, at 378 nm; Absorption coefficient, total particulate matter, at 379 nm; Absorption coefficient, total particulate matter, at 380 nm; Absorption coefficient, total particulate matter, at 381 nm; Absorption coefficient, total particulate matter, at 382 nm; Absorption coefficient, total particulate matter, at 383 nm; Absorption coefficient, total particulate matter, at 384 nm; Absorption coefficient, total particulate matter, at 385 nm; Absorption coefficient, total particulate matter, at 386 nm; Absorption coefficient, total particulate matter, at 387 nm; Absorption coefficient, total particulate matter, at 388 nm; Absorption coefficient, total particulate matter, at 389 nm; Absorption coefficient, total particulate matter, at 390 nm; Absorption coefficient, total particulate matter, at 391 nm; Absorption coefficient, total particulate matter, at 392 nm; Absorption coefficient, total particulate matter, at 393 nm; Absorption coefficient, total particulate matter, at 394 nm; Absorption coefficient, total particulate matter, at 395 nm; Absorption coefficient, total particulate matter, at 396 nm; Absorption coefficient, total particulate matter, at 397 nm; Absorption coefficient, total particulate matter, at 398 nm; Absorption coefficient, total particulate matter, at 399 nm; Absorption coefficient, total particulate matter, at 400 nm; Absorption coefficient, total particulate matter, at 401 nm; Absorption coefficient, total particulate matter, at 402 nm; Absorption coefficient, total particulate matter, at 403 nm; Absorption coefficient, total particulate matter, at 404 nm; Absorption coefficient, total particulate matter, at 405 nm; Absorption coefficient, total particulate matter, at 406 nm; Absorption coefficient, total particulate matter, at 407 nm; Absorption coefficient, total particulate matter, at 408 nm; Absorption coefficient, total particulate matter, at 409 nm; Absorption coefficient, total particulate matter, at 410 nm; Absorption coefficient, total particulate matter, at 411 nm; Absorption coefficient, total particulate matter, at 412 nm; Absorption coefficient, total particulate matter, at 413 nm; Absorption coefficient, total particulate matter, at 414 nm; Absorption coefficient, total particulate matter, at 415 nm; Absorption coefficient, total particulate matter, at 416 nm; Absorption coefficient, total particulate matter, at 417 nm; Absorption coefficient, total particulate matter, at 418 nm; Absorption coefficient, total particulate matter, at 419 nm; Absorption coefficient, total particulate matter, at 420 nm; Absorption coefficient, total particulate matter, at 421 nm; Absorption coefficient, total particulate matter, at 422 nm; Absorption coefficient, total particulate matter, at 423 nm; Absorption coefficient, total particulate matter, at 424 nm; Absorption coefficient, total particulate matter, at 425 nm; Absorption coefficient, total particulate matter, at 426 nm; Absorption coefficient, total particulate matter, at 427 nm; Absorption coefficient, total particulate matter, at 428 nm; Absorption coefficient, total particulate matter, at 429 nm; Absorption coefficient, total particulate matter, at 430
    Type: Dataset
    Format: text/tab-separated-values, 28355 data points
    Location Call Number Limitation Availability
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  • 4
    Publication Date: 2024-06-25
    Description: The MacArtney Triaxus extended version is a remotely operated towed vehicle (ROTV). It is towed behind the ship between 2 and 10 knots and can undulate in a saw tooth pattern between a few meters below the surface and 350m depth. The umbilical provides power and a fiber optic link to sensors that are mounted on the Triaxus (see SensorWeb). The data collected by the sensors were recorded on separate computers, one computer per sensor (including the flight information from the Triaxus itself). Thus, there are 7 separate data streams saved in separate folders plus a folder with metadata information about the different dives. During long Triaxus operations, new data files would be started approximately every 4 hours, because some of the employed software programs do not allow for backing up of the files while they are still being written to. A heavy weight (depressor) was employed directly behind the ship to pull the umbilical below the water line before sea ice can close in behind the ship. In addition to a few test dives, three transects across the marginal ice zone north of Svalbard (Yermak Plateau) were collected on PS131 in July/August 2022.
    Keywords: Arctic Ocean; ATWAICE; AWI_PhyOce; Binary Object; Binary Object (File Size); File content; FRAM; Fram Strait; FRontiers in Arctic marine Monitoring; Physical Oceanography @ AWI; Polarstern; PS131; PS131_117-1; PS131_18-1; PS131_36-2; PS131_52-1; PS131_55-1; PS131_64-1; PS131_86-1; PS131_90-1; PS131_95-1; TOPR; Towed Ocean Profiler; Triaxus
    Type: Dataset
    Format: text/tab-separated-values, 16 data points
    Location Call Number Limitation Availability
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  • 5
    Publication Date: 2024-06-26
    Keywords: 19-Butanoyloxyfucoxanthin; 19-Hexanoyloxyfucoxanthin; Alloxanthin; alpha-Carotene; Antheraxanthin; ANT-XXXIII/4; Astaxanthin; Atlantic Ocean transect; beta-Carotene; Canarias Sea; Chlorophyll a; Chlorophyll b; Chlorophyll c1+c2; Chlorophyll c3; Chlorophyllide a; CT; CTD/Rosette; CTD-RO; DATE/TIME; DEPTH, water; Diadinoxanthin; diagnostic pigment analysis; Diatoxanthin; Dinoxanthin; Divinyl chlorophyll a; Divinyl chlorophyll b; Event label; Fucoxanthin; Gear; High Performance Liquid Chromatography (HPLC); HPLC analysis; LATITUDE; LONGITUDE; Lutein; Mg-2,4-divinyl pheoporphyrin a5 monomethyl ester; Neoxanthin; particulate matter; Peridinin; Pheophorbide a; Pheophytin a; Pheophytin b; phytoplankton pigment concentrations phytoplankton groups; Polarstern; Province; PS113; PS113_11-2; PS113_1-2; PS113_13-2; PS113_14-2; PS113_15-1; PS113_17-2; PS113_18-2; PS113_20-1; PS113_21-1; PS113_22-2; PS113_23-2; PS113_25-1; PS113_26-2; PS113_27-1; PS113_28-1; PS113_29-2; PS113_30-2; PS113_31-1; PS113_3-2; PS113_33-1; PS113_5-2; PS113_6-2; PS113_7-2; PS113_9-2; PS113-track; Pyropheophorbide a; Pyropheophytin a; radiometric profiles; Sample ID; South Atlantic Ocean; Station label; Underway cruise track measurements; Violaxanthin; Zeaxanthin
    Type: Dataset
    Format: text/tab-separated-values, 14280 data points
    Location Call Number Limitation Availability
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  • 6
    Publication Date: 2024-06-26
    Keywords: ANT-XXXIII/4; Atlantic Ocean transect; Canarias Sea; Chlorophyll a; DATE/TIME; DEPTH, water; diagnostic pigment analysis; Event label; Gear; HPLC analysis; LATITUDE; LONGITUDE; particulate matter; phytoplankton pigment concentrations phytoplankton groups; Polarstern; Province; PS113; PS113_1-1; PS113_11-1; PS113_13-1; PS113_14-1; PS113_15-2; PS113_17-1; PS113_18-1; PS113_22-1; PS113_23-1; PS113_26-1; PS113_27-2; PS113_28-2; PS113_29-1; PS113_30-1; PS113_3-1; PS113_31-2; PS113_33-2; PS113_7-1; PS113_9-1; radiometric profiles; RAMSES; RAMSES hyperspectral radiometer; South Atlantic Ocean; Station label
    Type: Dataset
    Format: text/tab-separated-values, 140756 data points
    Location Call Number Limitation Availability
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  • 7
    Publication Date: 2024-06-26
    Keywords: ANT-XXXIII/4; Atlantic Ocean transect; Canarias Sea; Chlorophyll a; CTD-TRIAXUS; DATE/TIME; DEPTH, water; diagnostic pigment analysis; Event label; Gear; HPLC analysis; LATITUDE; LONGITUDE; particulate matter; phytoplankton pigment concentrations phytoplankton groups; Polarstern; Province; PS113; PS113_16-1; PS113_19-1; PS113_20-2; PS113_24-1; PS113_27-3; PS113_28-3; PS113_29-3; PS113_31-3; PS113_32-1; PS113_8-1; radiometric profiles; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 139200 data points
    Location Call Number Limitation Availability
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  • 8
    Publication Date: 2024-06-26
    Keywords: ANT-XXXIII/4; Atlantic Ocean transect; Canarias Sea; Chlorophyll a; CTD-TRIAXUS; DATE/TIME; diagnostic pigment analysis; Event label; Gear; HPLC analysis; LATITUDE; LONGITUDE; particulate matter; phytoplankton pigment concentrations phytoplankton groups; Polarstern; PS113; PS113_1-1; PS113_11-1; PS113_13-1; PS113_14-1; PS113_15-2; PS113_16-1; PS113_17-1; PS113_18-1; PS113_19-1; PS113_20-2; PS113_2-1; PS113_22-1; PS113_23-1; PS113_24-1; PS113_26-1; PS113_27-2; PS113_27-3; PS113_28-2; PS113_29-1; PS113_29-3; PS113_30-1; PS113_3-1; PS113_31-2; PS113_31-3; PS113_32-1; PS113_33-2; PS113_7-1; PS113_9-1; radiometric profiles; RAMSES; RAMSES hyperspectral radiometer; South Atlantic Ocean
    Type: Dataset
    Format: text/tab-separated-values, 3411 data points
    Location Call Number Limitation Availability
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  • 9
    Publication Date: 2024-05-28
    Keywords: Absorption coefficient, colored dissolved organic matter at given wavelength; Algal pigment absorption coefficient at given wavelength; Backscattering coefficient of particles at given wavelength; Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; Irradiance coefficient, diffuse downwelling at given wavelength; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; Quality flag, time; remote sensing; Suspended matter, total; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 744392 data points
    Location Call Number Limitation Availability
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  • 10
    Publication Date: 2024-05-28
    Keywords: Bio-optical in-situ data; Comment; DATE/TIME; DEPTH, water; ESA_OC-CCI; Identification; LATITUDE; LONGITUDE; Ocean Colour; Ocean Colour multi-mission algorithm prototype system; OMAPS; remote sensing; Remote sensing reflectance at given wavelength; Wavelength
    Type: Dataset
    Format: text/tab-separated-values, 5254044 data points
    Location Call Number Limitation Availability
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