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  • American Association for the Advancement of Science (AAAS)  (4)
  • 2020-2024  (4)
  • 1
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 370, No. 6517 ( 2020-11-06), p. 712-715
    Abstract: The Arctic is entering a new ecological state, with alarming consequences for humanity. Animal-borne sensors offer a window into these changes. Although substantial animal tracking data from the Arctic and subarctic exist, most are difficult to discover and access. Here, we present the new Arctic Animal Movement Archive (AAMA), a growing collection of more than 200 standardized terrestrial and marine animal tracking studies from 1991 to the present. The AAMA supports public data discovery, preserves fundamental baseline data for the future, and facilitates efficient, collaborative data analysis. With AAMA-based case studies, we document climatic influences on the migration phenology of eagles, geographic differences in the adaptive response of caribou reproductive phenology to climate change, and species-specific changes in terrestrial mammal movement rates in response to increasing temperature.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
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    detail.hit.zdb_id: 2066996-3
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  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 370, No. 6521 ( 2020-12-04), p. 1208-1214
    Abstract: We developed a de novo protein design strategy to swiftly engineer decoys for neutralizing pathogens that exploit extracellular host proteins to infect the cell. Our pipeline allowed the design, validation, and optimization of de novo human angiotensin-converting enzyme 2 (hACE2) decoys to neutralize severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The best monovalent decoy, CTC-445.2, bound with low nanomolar affinity and high specificity to the receptor-binding domain (RBD) of the spike protein. Cryo–electron microscopy (cryo-EM) showed that the design is accurate and can simultaneously bind to all three RBDs of a single spike protein. Because the decoy replicates the spike protein target interface in hACE2, it is intrinsically resilient to viral mutational escape. A bivalent decoy, CTC-445.2d, showed ~10-fold improvement in binding. CTC-445.2d potently neutralized SARS-CoV-2 infection of cells in vitro, and a single intranasal prophylactic dose of decoy protected Syrian hamsters from a subsequent lethal SARS-CoV-2 challenge.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
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    detail.hit.zdb_id: 2066996-3
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  • 3
    In: Science Advances, American Association for the Advancement of Science (AAAS), Vol. 7, No. 34 ( 2021-08-20)
    Abstract: Isopenicillin N synthase (IPNS) catalyzes the unique reaction of l -δ-(α-aminoadipoyl)- l -cysteinyl- d -valine (ACV) with dioxygen giving isopenicillin N (IPN), the precursor of all natural penicillins and cephalosporins. X-ray free-electron laser studies including time-resolved crystallography and emission spectroscopy reveal how reaction of IPNS:Fe(II):ACV with dioxygen to yield an Fe(III) superoxide causes differences in active site volume and unexpected conformational changes that propagate to structurally remote regions. Combined with solution studies, the results reveal the importance of protein dynamics in regulating intermediate conformations during conversion of ACV to IPN. The results have implications for catalysis by multiple IPNS-related oxygenases, including those involved in the human hypoxic response, and highlight the power of serial femtosecond crystallography to provide insight into long-range enzyme dynamics during reactions presently impossible for nonprotein catalysts.
    Type of Medium: Online Resource
    ISSN: 2375-2548
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2021
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  • 4
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 381, No. 6659 ( 2023-08-18)
    Abstract: At the end of the Pleistocene, most of Earth’s large mammals (megafauna) became extinct. These extinctions occurred at different times globally, resulting in a drastic reorganization of terrestrial ecosystems. Despite decades of research on extinction causality, the relative importance of late-Quaternary climate changes and spreading human impacts have been difficult to disentangle because poor chronological resolution in the fossil record has precluded alignment of these rapidly occurring, tightly linked phenomena. RATIONALE The Rancho La Brea (RLB) locality in Southern California provides a unique opportunity to investigate decadal-scale changes in megafaunal populations and community composition across the latest Pleistocene. At this site, naturally occurring asphalt seeps entrapped and preserved the bones of hundreds, and in some cases thousands, of individuals from numerous megafaunal species across the last 50,000 years of the Pleistocene. Nearly all of these osteological specimens preserve original collagen, which permits precise radiocarbon dating analysis. RESULTS We obtained radiocarbon dates on 172 specimens from seven extinct and one extant species: Smilodon fatalis , Aenocyon dirus , Panthera atrox , Bison antiquus , Equus occidentalis , Paramylodon harlani, Camelops hesternus , and Canis latrans , spanning 15.6 to 10.0 thousand calendar years before present (ka). We used the resulting high-resolution chronology of entrapment at RLB to analyze population dynamics across this time interval and the timing of local disappearance for different taxa. To investigate the potential roles of late-Quaternary environmental change and human activities in driving the observed patterns, we compared our analyses of population structure and megafaunal extirpation against well-resolved regional and continental paleoclimatic proxies, vegetation records, and modeled human demographic growth. We used time-series modeling to investigate the dynamics of ecosystem change and evaluate causal relationships among these different phenomena. Modeling of extinction timing using several methods established that all taxa except coyotes were extirpated from RLB by 12.9 ka, before the onset of the Younger Dryas and well before the continental extinction of North American megafauna. The disappearance of all taxa was synchronous except for camels and sloths, which disappeared a few hundred years earlier in concert with aridification and tree loss during the Bølling–Allerød. The simultaneous disappearance of Smilodon , Aenocyon , Panthera , Equus , and Bison antiquus coincided with a regional ecological state shift characterized by floral community reorganization and unprecedented fire activity. Time-series modeling strongly implicates humans as the primary cause of the state shift and resulting extinctions. CONCLUSION Our data document a transition from a postglacial megafaunal woodland to a human-mediated chaparral ecosystem in Southern California before the onset of the Younger Dryas. This transition began with gradual opening and drying of the landscape over two millennia, and terminated in an abrupt (300-year) regime shift characterized by the complete extirpation of megafauna and unprecedented fire activity. This state shift appears to have been triggered by human-ignited fires in an ecosystem stressed by rapid warming, a megadrought, and a millennial-scale trend toward the loss of large herbivores from the landscape. This event parallels processes occurring in Mediterranean ecosystems today. Sequence of ecological events as recorded at Rancho La Brea, California. Top left: conditions around the tar pits were moist and cool, with abundant trees and megafaunal mammals. Bottom left: the onset of postglacial warming and drying begins as human pressure on herbivores increases. Top right: the synergy between climatic and human impacts enables a sudden ecological state transition characterized by unprecedented fire activity. Bottom right: a chapparal ecosystem is established; megafauna are extinct, and only coyote entrapment continues at the tar pits. ILLUSTRATIONS BY C. TOWNSEND, COURTESY OF THE NATURAL HISTORY MUSEUMS OF LOS ANGELES COUNTY
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
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