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  • Data  (8)
  • PANGAEA  (8)
  • AMER ASSOC ADVANCEMENT SCIENCE
  • 2020-2024  (8)
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  • Data  (8)
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Keywords
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  • PANGAEA  (8)
  • AMER ASSOC ADVANCEMENT SCIENCE
Years
Year
  • 1
    Publication Date: 2023-04-05
    Description: The gut content (dry mass and organic matter fraction) of three antarctic ascidians (Corella antarctica, Cnemidocarpa verrucosa, and Molgula pedunculata) under different sedimentation regimes were estimated together with mantel glycogen content. Samples were taken by scuba diving at 20 m depth at three different stations inside Potter Cove (South Shetlands, Antarctica): Inner Station (62º13'23.6''S; 58º38'41''W), Middle Station (62º13'54''S; 58º40'06''W), and Outer Station (62º14'10''S; 58º42'48''W) during austral February 2011.
    Keywords: Analytical Balance, Sartorius, LA230S; Antarctic ascidians; Combustion at 450 ºC for 5 h to obtain ash weight, subtraction of ash weight from total dry weight; determined after Kunst et al. (1984) and Keppler and Decker (1984), following modification specified in Torre et al. (2014); DIVER; Elevation of event; Event label; glycogen; Glycogen; Gut, dry mass; gut content; Latitude of event; Longitude of event; Organic matter of total gut content; PotterCove_inner; PotterCove_middle; PotterCove_outer; Potter Cove, King George Island, Antarctic Peninsula; Registration number of species; Sampling by diver; sedimentation; Species; Specimen identification; Station label; Uniform resource locator/link to reference; Wet mass
    Type: Dataset
    Format: text/tab-separated-values, 813 data points
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2024-03-20
    Description: Benthic organisms of the Southern Ocean are particularly vulnerable to ocean acidification (OA), as they inhabit cold waters where calcite-aragonite saturation states are naturally low. OA most strongly affects animals with calcium carbonate skeletons or shells, such as corals and mollusks. We exposed the abundant cold-water coral Malacobelemnon daytoni from an Antarctic fjord to low pH seawater (LpH) (7.68 +/- 0.17) to test its physiological responses to OA, at the level of gene expression (RT-PCR) and enzyme activity. Corals were exposed in short- (3 days) and long-term (54 days) experiments to two pCO2 conditions (ambient and elevated pCO2 equaling RCP 8.5, IPCC 2019, approximately 372.53 and 956.78 μatm, respectively). Of the eleven genes studied through RT-PCR, six were significantly upregulated compared with control in the short-term in the LpH condition, including the antioxidant enzyme superoxide dismutase (SOD), Heat Shock Protein 70 (HSP70), Toll-like receptor (TLR), galaxin and ferritin. After long-term exposure to low pH conditions, RT-PCR analysis showed seven genes were upregulated. These include the mannose-binding C-Lectin and HSP90. Also, the expression of TLR and galaxin, among others, continued to be upregulated after long-term exposure to low pH. Expression of carbonic anhydrase (CA), a key enzyme involved in calcification, was also significantly upregulated after long-term exposure. Our results indicated that, after two months, M. daytoni is not acclimatized to this experimental LpH condition. Gene expression profiles revealed molecular impacts that were not evident at the enzyme activity level. Consequently, understanding the molecular mechanisms behind the physiological processes in the response of a coral to LpH is critical to understanding the ability of polar species to cope with future environmental changes. Approaches integrating molecular tools into Antarctic ecological and/or conservation research make an essential contribution given the current ongoing OA processes.
    Keywords: Alkalinity, total; Alkalinity, total, standard deviation; Animalia; Antarctic; Aragonite saturation state; Aragonite saturation state, standard deviation; Benthic animals; Benthos; Bicarbonate ion; Bicarbonate ion, standard deviation; Calcite saturation state; Calcite saturation state, standard deviation; Calculated using CO2SYS; Calculated using seacarb after Nisumaa et al. (2010); Calculated using seacarb after Orr et al. (2018); Carbon, inorganic, dissolved; Carbon, inorganic, dissolved, standard deviation; Carbonate ion; Carbonate ion, standard deviation; Carbonate system computation flag; Carbon dioxide; Carbon dioxide, standard deviation; Catalase activity, unit per protein mass; Cnidaria; Coast and continental shelf; Containers and aquaria (20-1000 L or 〈 1 m**2); Day of experiment; Dry air column-averaged mixing ratio of carbon dioxide; Dry air column-averaged mixing ratio of carbon dioxide, standard deviation; EXP; Experiment; Fugacity of carbon dioxide (water) at sea surface temperature (wet air); Fugacity of carbon dioxide in seawater, standard deviation; Gene expression; Gene expression (incl. proteomics); King_George_Island_OA; Laboratory experiment; Malacobelemnon daytoni; OA-ICC; Ocean Acidification International Coordination Centre; Other metabolic rates; Partial pressure of carbon dioxide, standard deviation; Partial pressure of carbon dioxide (water) at sea surface temperature (wet air); pH; pH, standard deviation; Polar; Potentiometric; Potentiometric titration; Registration number of species; Salinity; Salinity, standard deviation; Sample ID; Single species; Species; Superoxide dismutase activity, unit per protein mass; Temperature, water; Temperature, water, standard deviation; Treatment; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 3461 data points
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2024-06-12
    Description: Southern Ocean organisms are thought to be particularly vulnerable to ocean acidification, as they inhabit cold waters where calcite-aragonite saturation states are naturally low. It is also generally assumed that calcifying animals would be more affected by ocean acidification than non-calcifying ones. In this context, we aimed to study the impacts of reduced pH on the ascidia Cnemidocarpa verrucosa sp. A. Here, we used gene expression profiling and enzymatic activity to study the responses of that Antarctic benthic species to ocean acidification. We sampled Cnemidocarpa verrucosa sp. A. by scuba diving at approximately 15 m depth at Carlini station, Potter Cove, King George Island, Antarctica. Superoxide dismutase (SOD) activity was measured in the ascidia, samples (approximately 70 mg of brachial basket) were homogenized in 20 mM Tris-HCl, 1 mM EDTA, pH 7.6, with a ratio 1:4 w/v. Homogenates were centrifuged at 14,000 x g for 3 min at 4°C and the supernatant was used to measure SOD activity at 20°C following Livingstone et al. (1992) protocol. Supernatant was mixed with the measurement buffer (43 mM K₂HPO₄, 43 mM KH₂PO₄, 0.1 mM EDTA, pH 7.68), 5 mM Xanthina (Sigma X-0626), 100 µM Citocromo-C (Sigma C-2037), 0.3 mU/µl XOD (Xanthin-Oxidasa, Sigma X-4875) in 2 M (NH₄)2SO₄. The measurement was made in a photometer at 20°C, 550 nm wavelength, for 3 minutes, every 10 seconds. For the calculations, the total protein content of the samples was measured using the method of Bradford (1976). Superoxide dismutase activity was expressed in activity in the extract (mU) / amount of protein (mg). All measurements were made in triplicate.
    Keywords: Ant_PotterCove_2015; Antarctica; apoptosis; Apoptotic activity, per protein; Background corrected; Calculated average/mean values; Caspase; Cnemidocarpa verrucosa sp. A; Date/time end, experiment; Date/time start, experiment; DIVER; Event label; laboratory study; Potter Cove; Potter Cove, King George Island, Antarctic Peninsula; Sample code/label; Sampling by diver; Species; Spectrophotometer UV/Vis, Beckman Coulter, DU800; Superoxide Dismutase; Temperature, water; Treatment; Tunicata; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 476 data points
    Location Call Number Limitation Availability
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  • 4
    Publication Date: 2024-06-12
    Description: Southern Ocean organisms are thought to be particularly vulnerable to ocean acidification, as they inhabit cold waters where calcite-aragonite saturation states are naturally low. It is also generally assumed that calcifying animals would be more affected by ocean acidification than non-calcifying ones. In this context, we aimed to study the impacts of reduced pH on the ascidia Cnemidocarpa verrucosa sp. A. Here, we used gene expression profiling and enzymatic activity to study the responses of that Antarctic benthic species to ocean acidification. We sampled Cnemidocarpa verrucosa sp. A. by scuba diving at approximately 15 m depth at Carlini station, Potter Cove, King George Island, Antarctica. Caspases 3/7 activity as indicators of apoptosis intensity was measured using the Caspase-Glow 3/7 Assay kit (Promega, USA) following the manufacturer's instructions. Samples were homogenized (16-33 mg) in lysis buffer consisting in 25 mM HEPES, 5 mM MgCl₂·6H₂O, 1 mM EGTA, 1 μg/mL pepstatin, 1 μg/mL leupectin, and 1 μg/mL aprotinin at a ratio 1:100 (Rivera-Ingraham et al., 2013) using a Precellys homogenizer (2 cycles at 5,500 x g at 4°C for 20 s). Homogenates were centrifuged at 13,000 x g at 4°C for 15 min and the supernatant was used to measure luminescence using Tristar LB941 plate reader (Berthold Technologies GmbH & Co. KG, Bad Wildbad, Germany). The total protein content of the samples was measured using the method of Bradford (1976). Caspase/Apoptotic activity was expressed as relative light units (RLU) per μg of protein × 104.
    Keywords: Ant_PotterCove_2015; Antarctica; apoptosis; Bradford method (1976); Buffer; Calculated; Calculated average/mean values; Caspase; Change of extinction; Cnemidocarpa verrucosa, superoxide dismutase, in extract; Cnemidocarpa verrucosa, superoxide dismutase, per protein mass; Cnemidocarpa verrucosa, superoxide dismutase, per wet mass; Cnemidocarpa verrucosa sp. A; Date/time end, experiment; Date/time start, experiment; DIVER; Event label; laboratory study; Potter Cove; Potter Cove, King George Island, Antarctic Peninsula; Proteins; Sample, wet mass; Sample code/label; Sample volume; Sampling by diver; Species; Spectrophotometer UV/Vis, Beckman Coulter, DU800; Temperature, water; Treatment; Tunicata; Type of study
    Type: Dataset
    Format: text/tab-separated-values, 527 data points
    Location Call Number Limitation Availability
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  • 5
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    PANGAEA
    In:  Instituto Antártico Argentino, Buenos Aires, Argentina
    Publication Date: 2024-06-29
    Keywords: Binary Object; Carlini_Base_C2; Carlini/Jubany Station; DATE/TIME; IMCOAST/IMCONet; Impact of climate induced glacier melt on marine coastal systems, Antarctica; Jubany; Jubany_Station_C2; Potter Cove, King George Island, Antarctic Peninsula; Research station; RS
    Type: Dataset
    Format: text/tab-separated-values, 670 data points
    Location Call Number Limitation Availability
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  • 6
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    Unknown
    PANGAEA
    In:  Instituto Antártico Argentino, Buenos Aires, Argentina
    Publication Date: 2024-06-29
    Keywords: Binary Object; Carlini_Base_C1; Carlini/Jubany Station; DATE/TIME; IMCOAST/IMCONet; Impact of climate induced glacier melt on marine coastal systems, Antarctica; Jubany; Jubany_Station_C1; Potter Cove, King George Island, Antarctic Peninsula; Research station; RS
    Type: Dataset
    Format: text/tab-separated-values, 375 data points
    Location Call Number Limitation Availability
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  • 7
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    Unknown
    PANGAEA
    In:  Instituto Antártico Argentino, Buenos Aires, Argentina
    Publication Date: 2024-06-29
    Keywords: Binary Object; Carlini_Base_C2; Carlini/Jubany Station; DATE/TIME; IMCOAST/IMCONet; Impact of climate induced glacier melt on marine coastal systems, Antarctica; Jubany; Jubany_Station_C2; Potter Cove, King George Island, Antarctic Peninsula; Research station; RS
    Type: Dataset
    Format: text/tab-separated-values, 486 data points
    Location Call Number Limitation Availability
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  • 8
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    Unknown
    PANGAEA
    In:  Instituto Antártico Argentino, Buenos Aires, Argentina
    Publication Date: 2024-06-29
    Keywords: Binary Object; Carlini_Base_C1; Carlini/Jubany Station; DATE/TIME; IMCOAST/IMCONet; Impact of climate induced glacier melt on marine coastal systems, Antarctica; Jubany; Jubany_Station_C1; Potter Cove, King George Island, Antarctic Peninsula; Research station; RS
    Type: Dataset
    Format: text/tab-separated-values, 251 data points
    Location Call Number Limitation Availability
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