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  • 1
    Publication Date: 2022-11-10
    Description: Dataset: Exudate Uptake Incubations - Microbial Abundances (Flow Cytometry)
    Description: Incubation experiments were conducted in St. John, US Virgin Islands to investigate the composition of exudates released from different species of benthic organisms, and the response of reef seawater microbial communities to mixed exudates released from different species and to specific metabolites. Exudates were collected from the stony coral Porites astreoides, and the octocoral Gorgonia ventalina after an 8 hour incubation. Reef seawater microbial communities were incubated separately in the presence of exudates from P. astreoides and G. ventalina for 48 hours and samples were collected to monitor changes in microbial abundance via flow cytometry and microbial community composition via 16S rRNA gene sequencing. Complementary Targeted and Untargeted metabolomic data from these incubation experiments is available on the MetaboLights database under accession number MTBLS2855. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865739
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736288
    Keywords: coral reef ; Planktonic Microorganisms ; Prochlorococcus ; Synechococcus ; Cell Counts ; flow cytometry ; Microbial Communities ; 16S rRNA gene sequencing
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2022-11-10
    Description: Dataset: Metabolite Uptake Incubations - Microbial Abundances (Flow Cytometry)
    Description: Pre-filtered reef seawater microbial communities collected from Lameshur Bay, U.S. Virgin Islands were incubated separately in the presence of the individual metabolites riboflavin, pantothenic acid, and caffeine for 24 hours and samples were collected to monitor changes in microbial community composition using 16S rRNA gene sequencing and microbial abundances using flow cytometry. Targeted metabolomic data from these incubations is available on the MetaboLights database under accession number MTBLS3286. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/865159
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1736288
    Keywords: coral reef ; Planktonic Microorganisms ; Prochlorococcus ; Synechococcus ; Cell Counts ; flow cytometry ; Microbial Communities ; 16S rRNA gene sequencing
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2022-05-27
    Description: © The Author(s), 2021. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Apprill, A., Holm, H., Santoro, A. E., Becker, C., Neave, M., Hughen, K., Richards Dona, A., Aeby, G., Work, T., Weber, L., & McNally, S. Microbial ecology of coral-dominated reefs in the Federated States of Micronesia. Aquatic Microbial Ecology, 86, (2021): 115–136, https://doi.org/10.3354/ame01961.
    Description: Microorganisms are central to the functioning of coral reef ecosystems, but their dynamics are unstudied on most reefs. We examined the microbial ecology of shallow reefs within the Federated States of Micronesia. We surveyed 20 reefs surrounding 7 islands and atolls (Yap, Woleai, Olimarao, Kosrae, Kapingamarangi, Nukuoro, and Pohnpei), spanning 875053 km2. On the reefs, we found consistently higher coral coverage (mean ± SD = 36.9 ± 22.2%; max 77%) compared to macroalgae coverage (15.2 ± 15.5%; max 58%), and low abundances of fish. Reef waters had low inorganic nutrient concentrations and were dominated by Synechococcus, Prochlorococcus, and SAR11 bacteria. The richness of bacterial and archaeal communities was significantly related to interactions between island/atoll and depth. High coral coverage on reefs was linked to higher relative abundances of Flavobacteriaceae, Leisingera, Owenweeksia, Vibrio, and the OM27 clade, as well as other heterotrophic bacterial groups, consistent with communities residing in waters near corals and within coral mucus. Microbial community structure at reef depth was significantly correlated with geographic distance, suggesting that island biogeography influences reef microbial communities. Reefs at Kosrae Island, which hosted the highest coral abundance and diversity, were unique compared to other locations; seawater from Kosrae reefs had the lowest organic carbon (59.8-67.9 µM), highest organic nitrogen (4.5-5.3 µM), and harbored consistent microbial communities (〉85% similar), which were dominated by heterotrophic cells. This study suggests that the reef-water microbial ecology on Micronesian reefs is influenced by the density and diversity of corals as well as other biogeographical features.
    Description: Samples were collected under Federated States of Micronesia collection permits FM12-11-03S and FM12-11-05S. This project was supported by funding to A.A.: Woods Hole Oceanographic Institution Access to the Sea, Dalio Family Foundation, Andrew W. Mellon Foundation Endowed Fund for Innovative Research, and National Science Foundation awards OCE- 1233612 and OCE-1736288. A.E.S. was supported by startup funds from the University of Maryland Center for Environmental Sciences. K.H. obtained funding from WHOI Access to the Sea and the Dalio Explore Foundation that supported this cruise.
    Keywords: Coral reef ; Microbiology ; Micronesia ; Oligotrophic ; Cyanobacteria ; SSU rRNA gene
    Repository Name: Woods Hole Open Access Server
    Type: Article
    Location Call Number Limitation Availability
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