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  • 2020-2023  (5)
  • 2020  (5)
  • 1
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    Particulate organic carbon deconstructed: molecular and chemical composition of particulate organic carbon in the ocean (2020)
    Frontiers Media
    Details
    Publication Date: 2022-10-26
    Description: © The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Kharbush, J. J., Close, H. G., Van Mooy, B. A. S., Arnosti, C., Smittenberg, R. H., Le Moigne, F. A. C., Mollenhauer, G., Scholz-Boettcher, B., Obreht, I., Koch, B. P., Becker, K. W., Iversen, M. H., & Mohr, W. Particulate organic carbon deconstructed: molecular and chemical composition of particulate organic carbon in the ocean. Frontiers in Marine Science, 7, (2020): 518, doi:10.3389/fmars.2020.00518.
    Description: The dynamics of the particulate organic carbon (POC) pool in the ocean are central to the marine carbon cycle. POC is the link between surface primary production, the deep ocean, and sediments. The rate at which POC is degraded in the dark ocean can impact atmospheric CO2 concentration. Therefore, a central focus of marine organic geochemistry studies is to improve our understanding of POC distribution, composition, and cycling. The last few decades have seen improvements in analytical techniques that have greatly expanded what we can measure, both in terms of organic compound structural diversity and isotopic composition, and complementary molecular omics studies. Here we provide a brief overview of the autochthonous, allochthonous, and anthropogenic components comprising POC in the ocean. In addition, we highlight key needs for future research that will enable us to more effectively connect diverse data sources and link the identity and structural diversity of POC to its sources and transformation processes.
    Description: We thank the Hanse Institute for Advanced Studies (HWK) and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) project number 422798570, as well as the Geochemical Society, for funding which made the workshop possible. CA was additionally supported by OCE-1736772. BV was additionally supported by NSF OCE-1756254.
    Keywords: Marine particles ; Water column ; Phytoplankton ; Marine microbes ; Structural analysis ; Organic matter characterization ; Biomarkers
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 2
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    Flow and diffusion around and within diatom aggregates: effects of aggregate composition and shape (2020)
    AMER SOC LIMNOLOGY OCEANOGRAPHY
    In:  EPIC3Limnology and Oceanography, AMER SOC LIMNOLOGY OCEANOGRAPHY, 65(8), pp. 1818-1833, ISSN: 0024-3590
    Details
    Publication Date: 2022-08-15
    Description: Diatom aggregates constitute a significant fraction of the particle flux from the euphotic zone into the mesopelagic ocean as part of the ocean's biological carbon pump. Modeling studies of their exchange processes with the surrounding water usually assume spherical shape and that aggregates are impermeable to flow. Using particle image velocimetry, we examined flow distributions around individual aggregates of various irregular shapes formed from two different diatom species: (1) Skeletonema marinoi, known for its cell–cell stickiness, and (2) Chaetoceros affinis, exhibiting cell-TEP (transparent exopolymeric particles) stickiness. Chaetoceros aggregates formed porous, highly irregularly shaped aggregates as compared to the more compact and near-spherical Skeletonema aggregates, yet flow distributions around both types of aggregates were relatively similar at a millimeter scale. At a micrometer scale, the irregular shape of diatom aggregates caused velocity gradients and vorticity close to the surface to locally vary more than for spherical model aggregates (agar-yeast spheres). Water was deflected from the surface of all aggregate types and we found no direct evidence that flow occurred within aggregates. Digital holographic imaging and Alcian blue staining revealed a substantial presence of TEP likely clogging the interstitial pore spaces in Chaetoceros aggregates. Radial oxygen concentration distributions measured by O2 microsensors within the aggregates were similar to those modeled for aggregates and spheres impermeable to flow. Thus, transport of gases, nutrients, and solutes likely occurs by diffusion, even within large, irregularly shaped diatom aggregates during sinking.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 3
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    Aggregate feeding by the copepods Calanus and Pseudocalanus controls carbon flux attenuation in the Arctic shelf sea during the productive period (2020)
    Frontiers Media SA
    In:  EPIC3Frontiers in Marine Sciences, Frontiers Media SA, 7, pp. 543124
    Details
    Publication Date: 2022-08-15
    Description: Up to 95% of the oceanic primary production is recycled within the upper few hundred meters of the water column. Marine snow and zooplankton fecal pellets in the upper water column are often recycled at rates exceeding those measured for microbial degradation, suggesting that zooplankton might be important for flux attenuation of particulate organic carbon in the upper ocean. However, direct evidence for interactions between zooplankton and settling aggregates are still rare. We investigated the importance of zooplankton aggregate feeding for carbon flux attenuation in the upper ocean by determining aggregate ingestion rates and feeding behavior on settling aggregates by the dominant Arctic filter-feeding copepods Calanus spp. and Pseudocalanus spp. Both genera were observed to detect and feed on settling aggregates. Using in situ zooplankton and aggregate abundances in combination with the measured aggregate feeding rates, we calculated that 60–67% of the total carbon flux attenuation at three Arctic locations could be explained by Calanus spp. and Pseudocalanus spp. aggregate feeding alone. When including microbial degradation of the settling aggregates, we could explain up to 77% of the total carbon flux attenuation. Our results suggest that by directly ingesting and fragmenting settling marine snow, mesozooplankton are key organisms for flux attenuation in Arctic waters.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 4
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    Arctic observations identify phytoplankton community composition as driver of carbon flux attenuation (2020)
    Wiley
    In:  EPIC3Geophysical Research Letters, Wiley, 47(14), pp. e2020GL087465, ISSN: 0094-8276
    Details
    Publication Date: 2022-08-15
    Description: The attenuation coefficient b is one of the most common ways to describe how strong the carbon flux is attenuated throughout the water column. Therefore, b is an essential input variable in many carbon flux and climate models. Marsay et al. (2015, https://doi.org/10.1073/pnas.1415311112) proposed that the median surface water temperature (0–500 m) may be a predictor of b, but our observations from Arctic waters challenge this hypothesis. We found a highly variable attenuation coefficient (b = 0.43–1.84) in cold Arctic waters (〈4.1 °C). Accordingly, we suggest that water temperature is not a globally valid predictor of the attenuation coefficient. We advocate instead that the phytoplankton composition and especially the relative abundance of diatoms can be used to parametrize the carbon flux attenuation in local and global carbon flux models.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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  • 5
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    Zooplankton and Nekton: Gatekeepers of the biological pump (2020)
    Frontiers Media SA
    In:  EPIC3Frontiers in Marine Science, Frontiers Media SA, 7(545)
    Details
    Publication Date: 2022-08-15
    Description: Zooplankton and nekton organisms create and destroy particles in manifold ways. They feed on the diverse components of the plankton community and on detrital matter. They disaggregate these components, but also repackage them into fecal pellets. Zooplankton and nekton thereby contributes to the attenuation, but also to the export of vertically settling particles. Many zooplankton and nekton organisms also ascend to the surface layer of the ocean at dusk to feed during the dark hours, and return to midwater at the break of dawn. This diurnal vertical migration (DVM) shuttles organic matter from the surface ocean to deeper layers, where it is metabolized and excreted. This active flux (as opposed to the passive flux of sinking particles) can contribute substantially to the biological pump, the downward export of carbon and nutrients into the oceans interior. Due to their multiple roles in oceanic particle dynamics, zooplankton and nekton organisms can actually be considered the gatekeepers of the biological pump.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , NonPeerReviewed
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