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  • 1
    In: Alzheimer's & Dementia, Wiley, Vol. 17, No. S4 ( 2021-12)
    Abstract: Cerebrospinal fluid (CSF) levels of p‐tau, t‐tau, and Aβ42 are widely accepted in vivo biomarkers for Alzheimer’s Disease (AD). However, lumbar puncture comes with limitations, including severe infection, headache, bleeding at the site, a lack of spatial information about regions of neurodegeneration, and substantial inter‐lab variability. A less invasive method based on imaging for assessing AD progression can lead to insights on AD subtypes, decrease lumbar puncture‐related morbidity, and lower the psychological burden on misdiagnosed patients. Method We developed deep learning models composed of a fully convolutional network (FCN) linked with a multi‐layer perceptron (MLP) to predict the 2‐year risk of AD progression in individuals with mild cognitive impairment (MCI) using T1‐weighted MRI, fluorodeoxyglucose (FDG) PET, and florbetapir (amyloid) PET images, respectively, from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) (n=328). Images were all co‐registered within‐subject, normalized to MNI space, and skull‐stripped utilizing SPM‐12 prior to incorporating them in the model. A fusion model incorporating all three imaging modalities was evaluated to utilize the additive benefits of each imaging modality. An MLP utilizing only the above three CSF biomarkers was trained for comparison. Result Our FCN‐MLP model trained on FDG data alone achieved the highest accuracy of all three single imaging modality models. The model based on the amyloid scans alone was the most sensitive of all three single modalities, though it was the least specific. The MLP model constructed from CSF biomarkers was more specific than all imaging modalities. The fusion model had the highest accuracy out of all models, comparable sensitivity to the amyloid model, and similar specificity to the CSF model. It also had a higher F1 score than all other models. Conclusion Our fusion model predicts AD progression risk with superior accuracy and sensitivity, and a comparable specificity to a model constructed from CSF biomarkers alone. The FCN‐MLP framework could be extended to incorporate non‐invasive features that are easily obtainable in a memory clinic to develop more accurate risk models. Future studies can focus on augmenting the deep learning model performance by including tau‐based PET images as development of more disease specific tau tracers continues to evolve.
    Type of Medium: Online Resource
    ISSN: 1552-5260 , 1552-5279
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2201940-6
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  • 2
    In: Brain, Oxford University Press (OUP), Vol. 143, No. 6 ( 2020-06-01), p. 1920-1933
    Abstract: Alzheimer’s disease is the primary cause of dementia worldwide, with an increasing morbidity burden that may outstrip diagnosis and management capacity as the population ages. Current methods integrate patient history, neuropsychological testing and MRI to identify likely cases, yet effective practices remain variably applied and lacking in sensitivity and specificity. Here we report an interpretable deep learning strategy that delineates unique Alzheimer’s disease signatures from multimodal inputs of MRI, age, gender, and Mini-Mental State Examination score. Our framework linked a fully convolutional network, which constructs high resolution maps of disease probability from local brain structure to a multilayer perceptron and generates precise, intuitive visualization of individual Alzheimer’s disease risk en route to accurate diagnosis. The model was trained using clinically diagnosed Alzheimer’s disease and cognitively normal subjects from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) dataset (n = 417) and validated on three independent cohorts: the Australian Imaging, Biomarker and Lifestyle Flagship Study of Ageing (AIBL) (n = 382), the Framingham Heart Study (n = 102), and the National Alzheimer’s Coordinating Center (NACC) (n = 582). Performance of the model that used the multimodal inputs was consistent across datasets, with mean area under curve values of 0.996, 0.974, 0.876 and 0.954 for the ADNI study, AIBL, Framingham Heart Study and NACC datasets, respectively. Moreover, our approach exceeded the diagnostic performance of a multi-institutional team of practicing neurologists (n = 11), and high-risk cerebral regions predicted by the model closely tracked post-mortem histopathological findings. This framework provides a clinically adaptable strategy for using routinely available imaging techniques such as MRI to generate nuanced neuroimaging signatures for Alzheimer’s disease diagnosis, as well as a generalizable approach for linking deep learning to pathophysiological processes in human disease.
    Type of Medium: Online Resource
    ISSN: 0006-8950 , 1460-2156
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2020
    detail.hit.zdb_id: 1474117-9
    SSG: 12
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  • 3
    In: Alzheimer's Research & Therapy, Springer Science and Business Media LLC, Vol. 13, No. 1 ( 2021-12)
    Abstract: Generative adversarial networks (GAN) can produce images of improved quality but their ability to augment image-based classification is not fully explored. We evaluated if a modified GAN can learn from magnetic resonance imaging (MRI) scans of multiple magnetic field strengths to enhance Alzheimer’s disease (AD) classification performance. Methods T1-weighted brain MRI scans from 151 participants of the Alzheimer’s Disease Neuroimaging Initiative (ADNI), who underwent both 1.5-Tesla (1.5-T) and 3-Tesla imaging at the same time were selected to construct a GAN model. This model was trained along with a three-dimensional fully convolutional network (FCN) using the generated images (3T*) as inputs to predict AD status. Quality of the generated images was evaluated using signal to noise ratio (SNR), Blind/Referenceless Image Spatial Quality Evaluator (BRISQUE) and Natural Image Quality Evaluator (NIQE). Cases from the Australian Imaging, Biomarker & Lifestyle Flagship Study of Ageing (AIBL, n  = 107) and the National Alzheimer’s Coordinating Center (NACC, n  = 565) were used for model validation. Results The 3T*-based FCN classifier performed better than the FCN model trained using the 1.5-T scans. Specifically, the mean area under curve increased from 0.907 to 0.932, from 0.934 to 0.940, and from 0.870 to 0.907 on the ADNI test, AIBL, and NACC datasets, respectively. Additionally, we found that the mean quality of the generated (3T*) images was consistently higher than the 1.5-T images, as measured using SNR, BRISQUE, and NIQE on the validation datasets. Conclusion This study demonstrates a proof of principle that GAN frameworks can be constructed to augment AD classification performance and improve image quality.
    Type of Medium: Online Resource
    ISSN: 1758-9193
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2506521-X
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  • 4
    In: iScience, Elsevier BV, Vol. 26, No. 9 ( 2023-09), p. 107522-
    Type of Medium: Online Resource
    ISSN: 2589-0042
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2023
    detail.hit.zdb_id: 2927064-9
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