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  • 1
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 366, No. 6470 ( 2019-12-06), p. 1236-1239
    Abstract: Habitat loss is the primary driver of biodiversity decline worldwide, but the effects of fragmentation (the spatial arrangement of remaining habitat) are debated. We tested the hypothesis that forest fragmentation sensitivity—affected by avoidance of habitat edges—should be driven by historical exposure to, and therefore species’ evolutionary responses to disturbance. Using a database containing 73 datasets collected worldwide (encompassing 4489 animal species), we found that the proportion of fragmentation-sensitive species was nearly three times as high in regions with low rates of historical disturbance compared with regions with high rates of disturbance (i.e., fires, glaciation, hurricanes, and deforestation). These disturbances coincide with a latitudinal gradient in which sensitivity increases sixfold at low versus high latitudes. We conclude that conservation efforts to limit edges created by fragmentation will be most important in the world’s tropical forests.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2019
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    detail.hit.zdb_id: 2066996-3
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  • 2
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 6, No. 1 ( 2015-04-13)
    Abstract: Invertebrates are dominant species in primary tropical rainforests, where their abundance and diversity contributes to the functioning and resilience of these globally important ecosystems. However, more than one-third of tropical forests have been logged, with dramatic impacts on rainforest biodiversity that may disrupt key ecosystem processes. We find that the contribution of invertebrates to three ecosystem processes operating at three trophic levels (litter decomposition, seed predation and removal, and invertebrate predation) is reduced by up to one-half following logging. These changes are associated with decreased abundance of key functional groups of termites, ants, beetles and earthworms, and an increase in the abundance of small mammals, amphibians and insectivorous birds in logged relative to primary forest. Our results suggest that ecosystem processes themselves have considerable resilience to logging, but the consistent decline of invertebrate functional importance is indicative of a human-induced shift in how these ecological processes operate in tropical rainforests.
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2015
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  • 3
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2018
    In:  Biodiversity and Conservation Vol. 27, No. 12 ( 2018-10), p. 3155-3169
    In: Biodiversity and Conservation, Springer Science and Business Media LLC, Vol. 27, No. 12 ( 2018-10), p. 3155-3169
    Type of Medium: Online Resource
    ISSN: 0960-3115 , 1572-9710
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
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  • 4
    In: Methods in Ecology and Evolution, Wiley, Vol. 14, No. 1 ( 2023-01), p. 242-251
    Abstract: Camera trap surveys are a popular ecological monitoring tool that produce vast numbers of images making their annotation extremely time‐consuming. Advances in machine learning, in the form of convolutional neural networks, have demonstrated potential for automated image classification, reducing processing time. These networks often have a poor ability to generalise, however, which could impact assessments of species in habitats undergoing change. Here, we (i) compare the performance of three network architectures in identifying species in camera trap images taken from tropical forest of varying disturbance intensities; (ii) explore the impacts of training dataset configuration; (iii) use habitat disturbance categories to investigate network generalisability and (iv) test whether classification performance and generalisability improve when using images cropped to bounding boxes. Overall accuracy (72.8%) was improved by excluding the rarest species and by adding extra training images (76.3% and 82.8%, respectively). Generalisability to new camera locations within a disturbance level was poor (mean F1‐score: 0.32). Performance across unseen habitat disturbance levels was worse (mean F1‐score: 0.27). Training the network on multiple disturbance levels improved generalisability (mean F1‐score on unseen disturbance levels: 0.41). Cropping images to bounding boxes improved overall performance (F1‐score: 0.77 vs. 0.47) and generalisability (mean F1‐score on unseen disturbance levels: 0.73), but at a cost of losing images that contained animals which the detector failed to detect. These results suggest researchers should consider using an object detector before passing images to a classifier, and an improvement in classification might be seen if labelled images from other studies are added to their training data. Composition of training data was shown to be influential, but including rarer classes did not compromise performance on common classes, providing support for the inclusion of rare species to inform conservation efforts. These findings have important implications for use of these methods for long‐term monitoring of habitats undergoing change, as they highlight the potential for misclassifications due to poor generalisability to impact subsequent ecological analyses. These methods therefore need to be considered as dynamic, in that changes to the study site would need to be reflected in the updated training of the network.
    Type of Medium: Online Resource
    ISSN: 2041-210X , 2041-210X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
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  • 5
    In: Biotropica, Wiley, Vol. 51, No. 6 ( 2019-11), p. 938-948
    Abstract: Beyond broad‐scale investigations of species diversity and abundance, there is little information on how land conversion in the tropics is affecting the behavior and demographics of surviving species. To fill these knowledge gaps, we explored the effects of land‐use change on the ecologically important and threatened bearded pig ( Sus barbatus ) over seven years in Borneo. Random placement of camera traps across a land‐use gradient of primary forest, logged forest, and oil palm plantations (32,542 trap nights) resulted in 2,303 independent capture events. Land‐use was associated with changes in the age structure and activity patterns of photographed individuals, alongside large changes in abundance shown previously. The proportion of adults recorded declined from 92% in primary forests to 76% in logged forests, and 67% in plantations, likely indicating increased fecundity in secondary forests. Activity level (capture rate) did not vary, but activity patterns changed markedly, from diurnal in primary forests, crepuscular in logged forests, to nocturnal in plantations. These changes corresponded with avoidance of diurnal human activity and may also protect bearded pigs from increased thermal stress in warmer degraded forests. The percentage of adult captures that were groups rather than individuals increased five‐fold from primary forests (4%) to logged forests (20%), possibly due to increased mating or in response to perceived threats from indirect human disturbance. We recommend further investigation of the demographic and behavioral effects of land‐use change on keystone species as altered population structure, activity patterns, and social behavior may have knock‐on effects for entire ecosystems.
    Type of Medium: Online Resource
    ISSN: 0006-3606 , 1744-7429
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2019
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  • 6
    In: Nature, Springer Science and Business Media LLC, Vol. 612, No. 7941 ( 2022-12-22), p. 707-713
    Abstract: Old-growth tropical forests are widely recognized as being immensely important for their biodiversity and high biomass 1 . Conversely, logged tropical forests are usually characterized as degraded ecosystems 2 . However, whether logging results in a degradation in ecosystem functions is less clear: shifts in the strength and resilience of key ecosystem processes in large suites of species have rarely been assessed in an ecologically integrated and quantitative framework. Here we adopt an ecosystem energetics lens to gain new insight into the impacts of tropical forest disturbance on a key integrative aspect of ecological function: food pathways and community structure of birds and mammals. We focus on a gradient spanning old-growth and logged forests and oil palm plantations in Borneo. In logged forest there is a 2.5-fold increase in total resource consumption by both birds and mammals compared to that in old-growth forests, probably driven by greater resource accessibility and vegetation palatability. Most principal energetic pathways maintain high species diversity and redundancy, implying maintained resilience. Conversion of logged forest into oil palm plantation results in the collapse of most energetic pathways. Far from being degraded ecosystems, even heavily logged forests can be vibrant and diverse ecosystems with enhanced levels of ecological function.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
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  • 7
    Online Resource
    Online Resource
    Elsevier BV ; 2010
    In:  Trends in Ecology & Evolution Vol. 25, No. 12 ( 2010-12), p. 699-704
    In: Trends in Ecology & Evolution, Elsevier BV, Vol. 25, No. 12 ( 2010-12), p. 699-704
    Type of Medium: Online Resource
    ISSN: 0169-5347
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2010
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  • 8
    In: Biotropica, Wiley, Vol. 48, No. 3 ( 2016-05), p. 373-380
    Abstract: Spesies invasif merupakan satu daripada ancaman utama terhadap kepelbagian biologi. Kajian ini menyelidik sejauh mana gangguan terhadap ekosistem semulajadi oleh manusia memudahkan penyebaran spesies asing dengan memberi tumpuan kepada mamalia kecil di hutan hujan tropika yang telah dibalak secara terpilih di negeri Sabah, Borneo. Pemilihan habitat‐mikro spesies invasif Rattus rattus dan tiga spesies mamalia kecil tempatan yang lain telah diselidik dalam ruang tiga dimensi dengan menggunakan gabungan kaedah spool‐dan‐benang dan satu kaedah baharu untuk menentukan secara kuantitatif pemilihan habitat pada skala kecil. Kaedah‐kaedah ini memungkinkan pengesanan perbezaan yang signifikan dari segi habitat‐mikro yang digunakan oleh setiap spesies mamalia kecil yang dikaji berbanding dengan habitat‐mikro yang tidak digunakan oleh spesies‐spesies yang berkenaan. Rattus rattus menunjukkan pemilihan paling ketara terhadap habitat yang sangat terganggu. Ini berbeza daripada dua spesies mamalia kecil tempatan yang lain iaitu dari genus Maxomys , yang mana R. rattus menunjukkan kelakuan arboreal yang sangat tinggi, dan spesies ini kerap meninggalkan bahagian lantai hutan dan bergerak melalui strata hutan bawah dan hutan pertengahan. Kelakuan ini membolehkan R. rattus menggunakan ruang tiga dimensi yang kompleks pada strata hutan bawah di habitat hutan yang terganggu, yang mana hutan ini adalah dicirkan oleh vegetasi yang sangat tebal. Fleksibiliti kelakuan R. rattus membolehkan spesies ini beroperasi di kedua‐dua ruang terrestrial dan arboreal. Ini memudahkan penyebaran R. rattus di habitat hutan terganggu. Aktiviti manusia yang menghasilkan habitat yang teruk terganggu yang disukai oleh R. rattus mungkin akan mempromosi penyebaran spesies yang invasif ini di hutan tropika Borneo, dan juga tempat‐tempat lain. Kami menunjukkan hasil kajian ini sebagai satu contoh kesan senergi, yang mana gangguan terhadap habitat akan mengancam kepelbagai biologi secara langsung, dan ini secara tidak langsung akan mengakibatkan peningkatan ancaman oleh spesies invasive iaitu dengan cara membina suatu keadaan habitat yang mempermudahkan penyebaran fauna asing.
    Type of Medium: Online Resource
    ISSN: 0006-3606 , 1744-7429
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2016
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    SSG: 12
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  • 9
    In: Biological Conservation, Elsevier BV, Vol. 212 ( 2017-08), p. 162-171
    Type of Medium: Online Resource
    ISSN: 0006-3207
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2017
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  • 10
    In: Journal of Animal Ecology, Wiley, Vol. 88, No. 1 ( 2019-01), p. 125-137
    Abstract: The assembly of species communities at local scales is thought to be driven by environmental filtering, species interactions and spatial processes such as dispersal limitation. Little is known about how the relative balance of these drivers of community assembly changes along environmental gradients, especially man‐made environmental gradients associated with land‐use change. Using concurrent camera‐ and live‐trapping, we investigated the local‐scale assembly of mammal communities along a gradient of land‐use intensity (old‐growth forest, logged forest and oil palm plantations) in Borneo. We hypothesised that increasing land‐use intensity would lead to an increasing dominance of environmental control over spatial processes in community assembly. Additionally, we hypothesised that competitive interactions among species might reduce in concert with declines in α‐diversity (previously documented) along the land‐use gradient. To test our first hypothesis, we partitioned community variance into the fractions explained by environmental and spatial variables. To test our second hypothesis, we used probabilistic models of expected species co‐occurrence patterns, in particular focussing on the prevalence of spatial avoidance between species. Spatial avoidance might indicate competition, but might also be due to divergent habitat preferences. We found patterns that are consistent with a shift in the fundamental mechanics governing local community assembly. In support of our first hypothesis, the importance of spatial processes (dispersal limitation and fine‐scale patterns of home‐ranging) appeared to decrease from low to high intensity land‐uses, whilst environmental control increased in importance (in particular due to fine‐scale habitat structure). Support for our second hypothesis was weak: whilst we found that the prevalence of spatial avoidance decreased along the land‐use gradient, in particular between congeneric species pairs most likely to be in competition, few instances of spatial avoidance were detected in any land‐use, and most were likely due to divergent habitat preferences. The widespread changes in land‐use occurring in the tropics might be altering not just the biodiversity found in landscapes, but also the fundamental mechanics governing the local assembly of communities. A better understanding of these mechanics, for a range of taxa, could underpin more effective conservation and management of threatened tropical landscapes.
    Type of Medium: Online Resource
    ISSN: 0021-8790 , 1365-2656
    URL: Issue
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    Language: English
    Publisher: Wiley
    Publication Date: 2019
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    SSG: 12
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