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  • 1
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 1995
    In:  Proceedings of the National Academy of Sciences Vol. 92, No. 21 ( 1995-10-10), p. 9628-9632
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 92, No. 21 ( 1995-10-10), p. 9628-9632
    Abstract: The phenobarbitone-responsive minimal promoter has been shown to lie between nt -179 and nt + 1 in the 5' (upstream) region of the CYP2B1/B2 gene in rat liver, on the basis of the drug responsiveness of the sequence linked to human growth hormone gene as reporter and targeted to liver as an asialoglycoprotein-DNA complex in vivo. Competition analyses of the nuclear protein-DNA complexes formed in gel shift assays with the positive (nt -69 to -98) and negative (nt -126 to -160) cis elements (PE and NE, respectively) identified within this region earlier indicate that the same protein may be binding to both the elements. The protein species purified on PE and NE affinity columns appear to be identical based on SDS/PAGE analysis, where it migrates as a protein of 26-28 kDa. Traces of a high molecular weight protein (94-100 kDa) are also seen in the preparation obtained after one round of affinity chromatography. The purified protein stimulates transcription of a minigene construct containing the 179 nt on the 5' side of the CYP2B1/B2 gene linked to the I exon in a cell-free system from liver nuclei. The purified protein can give rise to all the three complexes (I, II, and III) with the PE, just as the crude nuclear extract, under appropriate conditions. Manipulations in vitro indicate that the NE has a significantly higher affinity for the dephosphorylated form than for the phosphorylated form of the protein. The PE binds both forms. Phenobarbitone treatment of the animal leads to a significant increase in the phosphorylation of the 26- to 28-kDa and 94-kDa proteins in nuclear labeling experiments followed by isolation on a PE affinity column. We propose that the protein binding predominantly to the NE in the dephosphorylated state characterizes the basal level of transcription of the CYP2B1/B2 gene. Phenobarbitone treatment leads to phosphorylation of the protein, shifting the equilibrium toward binding to the PE. This can promote interaction with an upstream enhancer through other proteins such as the 94-kDa protein and leads to a significant activation of transcription.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 1995
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
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  • 2
    In: Biochemical Journal, Portland Press Ltd., Vol. 284, No. 1 ( 1992-05-15), p. 95-101
    Abstract: Jacalin [Artocarpus integrifolia (jack fruit) agglutinin] is made up of two types of chains, heavy and light, with M(r) values of 16,200 +/- 1200 and 2090 +/- 300 respectively (on the basis of gel-permeation chromatography under denaturing conditions). Its complete amino acid sequence was determined by manual degradation using a 4-dimethylaminoazobenzene 4′-isothiocyanate double-coupling method. Peptide fragments for sequence analysis were obtained by chemical cleavages of the heavy chain with CNBr, hydroxylamine hydrochloride and iodosobenzoic acid and enzymic cleavage with Staphylococcus aureus proteinase. The peptides were purified by a combination gel-permeation and reverse-phase chromatography. The light chains, being only 20 residues long, could be sequenced without fragmentation. Amino acid analyses and carboxypeptidase-Y-digestion C-terminal analyses of the subunits provided supportive evidence for their sequence. Computer-assisted alignment of the jacalin heavy-chain sequence failed to show sequence similarity to that of any lectin for which the complete sequence is known. Analyses of the sequence showed the presence of an internal repeat spanning residues 7-64 and 76-130. The internal repeat was found to be statistically significant.
    Type of Medium: Online Resource
    ISSN: 0264-6021 , 1470-8728
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    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1992
    detail.hit.zdb_id: 1473095-9
    SSG: 12
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  • 3
    In: FEBS Letters, Wiley, Vol. 441, No. 1 ( 1998-12-11), p. 71-76
    Abstract: Sequence analysis and metal ion binding studies reported earlier have established that the calcium binding protein (CaBP) from the parasitic ameboid Entamoeba histolytica protein has four canonical EF hand motifs which bind calcium. Equilibrium denaturation studies on both the apo and the holo forms of this protein indicate the presence of stable transition intermediates at low denaturant concentrations as revealed by the binding of the non‐specific hydrophobic dye ANS. Fast reaction kinetics shows that the binding of the Gdn + ions at or near the Ca 2+ sites in the N‐terminal domain influences metal ion binding to the sites in the C‐terminal domain. Isothermal calorimetric titrations performed using low GdnHCl concentrations reveal the presence of two binding sites of low affinity, both being endothermic in nature. Thus the stabilization of CaBP observed at low GdnHCl concentration represents a native‐like intermediate, with the Gdn + ions mimicking Ca 2+ binding at the N‐terminal domain of this protein.
    Type of Medium: Online Resource
    ISSN: 0014-5793 , 1873-3468
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    Language: English
    Publisher: Wiley
    Publication Date: 1998
    detail.hit.zdb_id: 1460391-3
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  • 4
    Online Resource
    Online Resource
    Elsevier BV ; 2003
    In:  Journal of Molecular Biology Vol. 332, No. 1 ( 2003-9), p. 217-228
    In: Journal of Molecular Biology, Elsevier BV, Vol. 332, No. 1 ( 2003-9), p. 217-228
    Type of Medium: Online Resource
    ISSN: 0022-2836
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2003
    detail.hit.zdb_id: 1355192-9
    SSG: 12
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  • 5
    In: Journal of Biological Chemistry, Elsevier BV, Vol. 261, No. 31 ( 1986-11), p. 14621-14627
    Type of Medium: Online Resource
    ISSN: 0021-9258
    Language: English
    Publisher: Elsevier BV
    Publication Date: 1986
    detail.hit.zdb_id: 2141744-1
    detail.hit.zdb_id: 1474604-9
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  • 6
    Online Resource
    Online Resource
    Portland Press Ltd. ; 1988
    In:  Biochemical Journal Vol. 252, No. 3 ( 1988-06-15), p. 625-631
    In: Biochemical Journal, Portland Press Ltd., Vol. 252, No. 3 ( 1988-06-15), p. 625-631
    Abstract: An acidic lectin (WBA II) was isolated to homogeneity from the crude seed extract of the winged bean (Psophocarpus tetragonolobus) by affinity chromatography on lactosylaminoethyl-Bio-Gel. Binding of WBA II to human erythrocytes of type-A, -B and -O blood groups showed the presence of 10(5) receptors/cell, with high association constants (10(6)-10(8) M-1). Competitive binding studies with blood-group-specific lectins reveal that WBA II binds to H- and T-antigenic determinants on human erythrocytes. Affinity-chromatographic studies using A-, B-, H- and T-antigenic determinants coupled to an insoluble matrix confirm the specificity of WBA II towards H- and T-antigenic determinants. Inhibition of the binding of WBA II by various sugars show that N-acetylgalactosamine and T-antigenic disaccharide (Thomsen-Friedenreich antigen, Gal beta 1-3GalNAc) are the most potent mono- and di-saccharide inhibitors respectively. In addition, inhibition of the binding of WBA II to erythrocytes by dog intestine H-fucolipid prove that the lectin binds to H-antigenic determinant.
    Type of Medium: Online Resource
    ISSN: 0264-6021 , 1470-8728
    RVK:
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1988
    detail.hit.zdb_id: 1473095-9
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  • 7
    Online Resource
    Online Resource
    Portland Press Ltd. ; 1984
    In:  Biochemical Journal Vol. 217, No. 3 ( 1984-02-01), p. 773-781
    In: Biochemical Journal, Portland Press Ltd., Vol. 217, No. 3 ( 1984-02-01), p. 773-781
    Abstract: The galactose-binding lectin from the seeds of the jequirity plant (Abrus precatorius) was subjected to various chemical modifications in order to detect the amino acid residues involved in its binding activity. Modification of lysine, tyrosine, arginine, histidine, glutamic acid and aspartic acid residues did not affect the carbohydrate-binding activity of the agglutinin. However, modification of tryptophan residues carried out in native and denaturing conditions with N-bromosuccinimide and 2-hydroxy-5-nitrobenzyl bromide led to a complete loss of its carbohydrate-binding activity. Under denaturing conditions 30 tryptophan residues/molecule were modified by both reagents, whereas only 16 and 18 residues/molecule were available for modification by N-bromosuccinimide and 2-hydroxy-5-nitrobenzyl bromide respectively under native conditions. The relative loss in haemagglutinating activity after the modification of tryptophan residues indicates that two residues/molecule are required for the carbohydrate-binding activity of the agglutinin. A partial protection was observed in the presence of saturating concentrations of lactose (0.15 M). The decrease in fluorescence intensity of Abrus agglutinin on modification of tryptophan residues is linear in the absence of lactose and shows a biphasic pattern in the presence of lactose, indicating that tryptophan residues go from a similar to a different molecular environment on saccharide binding. The secondary structure of the protein remains practically unchanged upon modification of tryptophan residues, as indicated by c.d. and immunodiffusion studies, confirming that the loss in activity is due to modification only.
    Type of Medium: Online Resource
    ISSN: 0264-6021 , 1470-8728
    RVK:
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1984
    detail.hit.zdb_id: 1473095-9
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  • 8
    Online Resource
    Online Resource
    Portland Press Ltd. ; 1979
    In:  Biochemical Journal Vol. 183, No. 1 ( 1979-10-01), p. 185-188
    In: Biochemical Journal, Portland Press Ltd., Vol. 183, No. 1 ( 1979-10-01), p. 185-188
    Abstract: Inhibition of lysozyme conjugated with p-aminophenyl beta-D-galactopyranoside by galactose-specific lectins from castor beans (Ricinus communis) has been utilized for assaying these lectins in the nanogram range.
    Type of Medium: Online Resource
    ISSN: 0264-6021
    RVK:
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1979
    detail.hit.zdb_id: 1473095-9
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  • 9
    Online Resource
    Online Resource
    Portland Press Ltd. ; 1986
    In:  Biochemical Journal Vol. 234, No. 3 ( 1986-03-15), p. 515-522
    In: Biochemical Journal, Portland Press Ltd., Vol. 234, No. 3 ( 1986-03-15), p. 515-522
    Abstract: The fluorescence of N-dansylgalactosamine [N-(5-dimethylaminonaphthalene-1-sulphonyl)galactosamine] was enhanced 11-fold with a 25 nm blue-shift in the emission maximum upon binding to soya-bean agglutinin (SBA). This change was used to determine the association constants and thermodynamic parameters for this interaction. The association constant of 1.51 × 10(6) M-1 at 20 degrees C indicated a very strong binding, which is mainly due to a relatively small entropy value, as revealed by the thermodynamic parameters: delta G = −34.7 kJ × mol-1, delta H = −37.9 kJ × mol-1 and delta S = −10.9 J × mol-1 × K-1. The specific binding of this sugar to SBA shows that the lectin can accommodate a large hydrophobic substituent on the C-2 of ga lactose. Binding of non-fluorescent ligands, studied by monitoring the fluorescence changes when they are added to a mixture of SBA and N-dansylgalactosamine, indicates that a hydrophobic substituent at the anomeric position increases the affinity of the interaction. The C-6 hydroxy group also stabilizes the binding considerably. Kinetics of binding of N-dansylgalactosamine to SBA studied by stopped-flow spectrofluorimetry are consistent with a single-step mechanism and yielded k+1 = 2.4 × 10(5) M-1 × s-1 and k-1 = 0.2 s-1 at 20 degrees C. The activation parameters indicate an enthalpicly controlled association process.
    Type of Medium: Online Resource
    ISSN: 0264-6021 , 1470-8728
    RVK:
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1986
    detail.hit.zdb_id: 1473095-9
    SSG: 12
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  • 10
    Online Resource
    Online Resource
    Portland Press Ltd. ; 1981
    In:  Biochemical Journal Vol. 195, No. 1 ( 1981-04-01), p. 341-343
    In: Biochemical Journal, Portland Press Ltd., Vol. 195, No. 1 ( 1981-04-01), p. 341-343
    Abstract: The association constants for the binding of a series of ligands with a galactose-specific lectin from Momordica charantia (bitter gourd) has been determined through the ligand-induced quenching of protein fluorescence. Analysis of the iodide quenching suggested that there is a slight increase in the accessibility of tryptophan residues of the lectin on binding lactose.
    Type of Medium: Online Resource
    ISSN: 0264-6021
    RVK:
    Language: English
    Publisher: Portland Press Ltd.
    Publication Date: 1981
    detail.hit.zdb_id: 1473095-9
    SSG: 12
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