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  • 1
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 28, No. 14 ( 2010-05-10), p. 2348-2355
    Abstract: To analyze the frequency and associations with prognostic markers and outcome of mutations in IDH genes encoding isocitrate dehydrogenases in adult de novo cytogenetically normal acute myeloid leukemia (CN-AML). Patients and Methods Diagnostic bone marrow or blood samples from 358 patients were analyzed for IDH1 and IDH2 mutations by DNA polymerase chain reaction amplification/sequencing. FLT3, NPM1, CEBPA, WT1, and MLL mutational analyses and gene- and microRNA-expression profiling were performed centrally. Results IDH mutations were found in 33% of the patients. IDH1 mutations were detected in 49 patients (14%; 47 with R132). IDH2 mutations, previously unreported in AML, were detected in 69 patients (19%; 13 with R172 and 56 with R140). R172 IDH2 mutations were mutually exclusive with all other prognostic mutations analyzed. Younger age ( 〈 60 years), molecular low-risk (NPM1-mutated/FLT3-internal tandem duplication–negative) IDH1-mutated patients had shorter disease-free survival than molecular low-risk IDH1/IDH2-wild-type (wt) patients (P = .046). R172 IDH2-mutated patients had lower complete remission rates than IDH1/IDH2wt patients (P = .007). Distinctive microarray gene- and microRNA-expression profiles accurately predicted R172 IDH2 mutations. The highest expressed gene and microRNAs in R172 IDH2-mutated patients compared with the IDH1/IDH2wt patients were APP (previously associated with complex karyotype AML) and miR-1 and miR-133 (involved in embryonal stem-cell differentiation), respectively. Conclusion IDH1 and IDH2 mutations are recurrent in CN-AML and have an unfavorable impact on outcome. The R172 IDH2 mutations, previously unreported in AML, characterize a novel subset of CN-AML patients lacking other prognostic mutations and associate with unique gene- and microRNA-expression profiles that may lead to the discovery of novel, therapeutically targetable leukemogenic mechanisms.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2010
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  • 2
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 30, No. 25 ( 2012-09-01), p. 3109-3118
    Abstract: To determine the association of RUNX1 mutations with therapeutic outcome in younger and older patients with primary cytogenetically normal acute myeloid leukemia (CN-AML) and with gene/microRNA expression signatures. Patients and Methods Younger ( 〈 60 years; n = 175) and older (≥ 60 years; n = 225) patients with CN-AML treated with intensive cytarabine/anthracycline-based first-line therapy on Cancer and Leukemia Group B protocols were centrally analyzed for RUNX1 mutations by polymerase chain reaction and direct sequencing and for established prognostic gene mutations. Gene/microRNA expression profiles were derived using microarrays. Results RUNX1 mutations were found in 8% and 16% of younger and older patients, respectively (P = .02). They were associated with ASXL1 mutations (P 〈 .001) and inversely associated with NPM1 (P 〈 .001) and CEBPA (P = .06) mutations. RUNX1-mutated patients had lower complete remission rates (P = .005 in younger; P = .006 in older) and shorter disease-free survival (P = .058 in younger; P 〈 .001 in older), overall survival (P = .003 in younger; P 〈 .001 in older), and event-free survival (P 〈 .001 for younger and older) than RUNX1 wild-type patients. Because RUNX1 mutations were more common in older patients and almost never coexisted with NPM1 mutations, RUNX1 mutation–associated expression signatures were derived in older, NPM1 wild-type patients and featured upregulation of genes normally expressed in primitive hematopoietic cells and B-cell progenitors, including DNTT, BAALC, BLNK, CD109, RBPMS, and FLT3, and downregulation of promoters of myelopoiesis, including CEBPA and miR-223. Conclusion RUNX1 mutations are twice as common in older than younger patients with CN-AML and negatively impact outcome in both age groups. RUNX1-mutated blasts have molecular features of primitive hematopoietic and lymphoid progenitors, potentially leading to novel therapeutic approaches.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2012
    detail.hit.zdb_id: 2005181-5
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  • 3
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 30, No. 7 ( 2012-03-01), p. 742-750
    Abstract: To determine the frequency of DNMT3A mutations, their associations with clinical and molecular characteristics and outcome, and the associated gene- and microRNA-expression signatures in primary cytogenetically normal acute myeloid leukemia (CN-AML). Patients and Methods Four hundred fifteen previously untreated adults were analyzed for DNMT3A mutations and established prognostic gene mutations and expression markers. Gene- and microRNA-expression profiles were derived using microarrays. Results Younger ( 〈 60 years; n = 181) and older (≥ 60 years; n = 234) patients had similar frequencies of DNMT3A mutations (35.3% v 33.3%). Missense mutations affecting arginine codon 882 (R882-DNMT3A) were more common (n = 92; 62%) than those affecting other codons (non–R882-DNMT3A). DNMT3A-mutated patients did not differ regarding complete remission rate, but had shorter disease-free survival (DFS; P = .03) and, by trend, overall survival (OS; P = .07) than DNMT3A–wild-type patients. In multivariable analyses, DNMT3A mutations remained associated with shorter DFS (P = .01), but not with shorter OS. When analyzed separately, the two DNMT3A mutation types had different significance by age group. Younger patients with non–R882-DNMT3A mutations had shorter DFS (P = .002) and OS (P = .02), whereas older patients with R882-DNMT3A mutations had shorter DFS (P = .005) and OS (P = .002) after adjustment for other clinical and molecular prognosticators. Gene- and microRNA-expression signatures did not accurately predict DNMT3A mutational status. Conclusion DNMT3A mutations are frequent in CN-AML, and their clinical significance seems to be age dependent. DNMT3A-R882 mutations are associated with adverse prognosis in older patients, and non–R882-DNMT3A mutations are associated with adverse prognosis in younger patients. Low accuracy of gene- and microRNA-expression signatures in predicting DNMT3A mutation status suggested that the role of these mutations in AML remains to be elucidated.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2012
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  • 4
    In: Journal of Clinical Oncology, American Society of Clinical Oncology (ASCO), Vol. 30, No. 36 ( 2012-12-20), p. 4515-4523
    Abstract: To evaluate the prognostic significance of the international European LeukemiaNet (ELN) guidelines for reporting genetic alterations in acute myeloid leukemia (AML). Patients and Methods We analyzed 1,550 adults with primary AML, treated on Cancer and Leukemia Group B first-line trials, who had pretreatment cytogenetics and, for cytogenetically normal patients, mutational status of NPM1, CEBPA, and FLT3 available. We compared complete remission (CR) rates, disease-free survival (DFS), and overall survival (OS) among patients classified into the four ELN genetic groups (favorable, intermediate-I, intermediate-II, adverse) separately for 818 younger (age 〈 60 years) and 732 older (age ≥ 60 years) patients. Results The percentages of younger versus older patients in the favorable (41% v 20%; P 〈 .001), intermediate-II (19% v 30%; P 〈 .001), and adverse (22% v 31%; P 〈 .001) genetic groups differed. The favorable group had the best and the adverse group the worst CR rates, DFS, and OS in both age groups. Both intermediate groups had significantly worse outcomes than the favorable but better than the adverse group. Intermediate-I and intermediate-II groups in older patients had similar outcomes, whereas the intermediate-II group in younger patients had better OS but not better CR rates or DFS than the intermediate-I group. The prognostic significance of ELN classification was confirmed by multivariable analyses. For each ELN group, older patients had worse outcomes than younger patients. Conclusion The ELN classification clearly separates the genetic groups by outcome, supporting its use for risk stratification in clinical trials. Because they have different proportions of genetic alterations and outcomes, younger and older patients should be reported separately when using the ELN classification.
    Type of Medium: Online Resource
    ISSN: 0732-183X , 1527-7755
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    Language: English
    Publisher: American Society of Clinical Oncology (ASCO)
    Publication Date: 2012
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  • 5
    In: Blood, American Society of Hematology, Vol. 140, No. Supplement 1 ( 2022-11-15), p. 10601-10602
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2022
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  • 6
    In: Blood, American Society of Hematology, Vol. 118, No. 26 ( 2011-12-22), p. 6920-6929
    Abstract: The associations of mutations in the enhancer of trithorax and polycomb family gene ASXL1 with pretreatment patient characteristics, outcomes, and gene-/microRNA-expression profiles in primary cytogenetically normal acute myeloid leukemia (CN-AML) are unknown. We analyzed 423 adult patients for ASXL1 mutations, other prognostic gene mutations, and gene-/microRNA-expression profiles. ASXL1 mutations were 5 times more common in older (≥ 60 years) patients (16.2%) than those younger than 60 years (3.2%; P 〈 .001). Among older patients, ASXL1 mutations associated with wild-type NPM1 (P 〈 .001), absence of FLT3-internal tandem duplications (P = .002), mutated CEBPA (P = .01), and with inferior complete remission (CR) rate (P = .04), disease-free survival (DFS; P = .03), overall survival (OS; P = .006), and event-free survival (EFS; P = .002). Within the European LeukemiaNet (ELN) genetic categories of older CN-AML, ASXL1 mutations associated with inferior CR rate (P = .02), OS (P 〈 .001), and EFS (P 〈 .001) among ELN Favorable, but not among ELN Intermediate-I patients. Multivariable analyses confirmed associations of ASXL1 mutations with unfavorable CR rate (P = .03), DFS (P 〈 .001), OS (P 〈 .001), and EFS (P 〈 .001) among ELN Favorable patients. We identified an ASXL1 mutation-associated gene-expression signature, but no microRNA-expression signature. This first study of ASXL1 mutations in primary CN-AML demonstrates that ASXL1mutated older patients, particularly within the ELN Favorable group, have unfavorable outcomes and may be candidates for experimental treatment approaches.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2011
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  • 7
    In: Blood, American Society of Hematology, Vol. 116, No. 21 ( 2010-11-19), p. 98-98
    Abstract: Abstract 98 Mutations in the TET2 gene were recently identified in a variety of myeloid neoplasms including AML. However, the frequency and clinical relevance of TET2 mutations in CN-AML, the largest cytogenetic subgroup of adult AML, have not been well defined. We report here the frequency and spectrum of TET2 mutations, and their associations with clinical and molecular characteristics, treatment outcomes and genome-wide gene- and microRNA (miR)-expression signatures in a relatively large cohort of 427 patients (pts) with primary CN-AML. The pts, aged 18–83 years, were intensively treated on CALGB frontline protocols, and were analyzed centrally for TET2 mutations by PCR and direct sequencing, and for other prognostic gene mutations (FLT3 internal tandem duplications [ITD] and tyrosine kinase domain mutations, MLL partial tandem duplications, and mutations in NPM1, CEBPA, WT1 and IDH1 & IDH2). If available, buccal swabs or remission marrow samples were used to determine TET2 germline status. Gene- and miR-expression profiles were derived using microarrays (Affymetrix HG-U133 plus 2.0 and OSUCCC custom miR array v4.0). At least 1 sequence variation in TET2 was found in 104 pts. Frameshift (n=59) and nonsense (n=34) variations were distributed throughout all coding exons, while missense changes (n=37) clustered mainly (28/37) in 2 evolutionarily conserved domains of TET2. The remaining missense variations in 9 pts were located outside the conserved domains, and analysis of available buccal swabs or remission samples showed that these sequence changes were present in the germline. Since it is unclear whether they represent innocent polymorphisms or disease-relevant mutations, these 9 pts were excluded from further analyses. TET2-mutated (TET2-mut) pts were older (P 〈 .001), had higher white blood counts (P=.04), a lower frequency of IDH1 and IDH2 mutations (P 〈 .001), and showed a trend towards higher frequency of CEBPA mutations (P=.07) compared with TET2 wild-type (TET2-wt) pts. The European LeukemiaNet (ELN) recently proposed a standardized reporting system for AML, in which CN-AML pts are assigned to Favorable-risk (Fav; pts with mutated CEBPA and/or mutated NPM1 without FLT3-ITD) or Intermediate-I-risk (Int-I; all remaining CN-AML pts) categories. We assessed the prognostic relevance of TET2 mutations in the context of the Fav (n=199 pts) and Int-I (n=219) ELN categories. TET2 mutations tended to be more frequent in Fav than in Int-I CN-AML pts (27% v 19%, P=.08), even though types and location of mutations were similar in both groups. Within the Fav category, TET2-mut pts had shorter event-free survival (EFS; P 〈 .001), a lower complete remission (CR) rate (P=.007) and shorter disease-free survival (DFS; P=.003; Fig 1), and shorter overall survival (OS; P=.001; Fig 2) compared with TET2-wt pts. In contrast, in the Int-I category, no difference in EFS (P=.45), CR rates (P=1.0), DFS (P=.36; Fig 1) or OS (P=.72; Fig 2) was found between TET2-mut and TET2-wt pts. In multivariable models, TET2 mutations associated with shorter EFS (P=.004; hazard ratio [HR], 1.71), lower CR rate (P=.03; odds ratio, 0.62) and shorter DFS (P=.049; HR, 1.54) only among Fav, but not among Int-I, CN-AML pts. A TET2 mutation-associated gene-expression signature consisting of 213 probe sets (136 named genes) was identified in ELN Fav CN-AML pts and included genes previously implicated in AML pathogenesis, e.g., upregulated CEBPA, APP, NCAM1 and IDH1, and downregulated MLL. In contrast, no signature of differentially expressed genes was identified in Int-I pts. miR profiling revealed distinct TET2 mutation-associated miR-expression signatures in the ELN Fav and Int-I risk groups. Among miRs upregulated in ELN Fav/TET2-mut pts were miR-148a (targeting DNA methyltransferases, highly expressed in refractory chronic lymphocytic leukemia) and miR-24 (stimulating myeloid cell proliferation, blocking granulocytic and erythroid differentiation). In Int-I/TET2-mut pts, one of the upregulated miRs was miR-204 (targeting HOXA10 and MEIS1, downregulated in NPM1-mut AML). We conclude that TET2 mutations are associated with lower remission rates and inferior survival in the ELN Fav category of CN-AML, and may be useful to refine the ELN molecular classification. TET2 mutation-associated gene- and miR-expression signatures, first identified here, may contribute to our understanding of the biology of TET2-mutated CN-AML. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2010
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  • 8
    In: Clinical Lymphoma Myeloma and Leukemia, Elsevier BV, Vol. 21, No. 9 ( 2021-09), p. e696-e698
    Type of Medium: Online Resource
    ISSN: 2152-2650
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2021
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  • 9
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 70, No. 8_Supplement ( 2010-04-15), p. 3558-3558
    Abstract: Despite improvement in our understanding of leukemogenic mechanisms, the majority of AML patients (pts) fail to achieve long-term survival and die of their disease. Therefore, new therapeutic options are needed. Silvestrol, a natural product isolated from Aglaia foveolata, has been shown to have potent antitumor activity, most likely through inhibition of initiation of translation. Promising synergistic effects of silvestrol with chemotherapy were shown in AML, but the exact mechanism mediating the antileukemic activity remains to be fully elucidated. Recently, microRNAs (miRs), short non-coding RNAs, have been recognized to contribute to leukemogenesis by inhibiting expression of targeted tumor suppressor genes. Therefore, we hypothesized that the antileukemic effect of silvestrol may at least be partly mediated by activity on miRs. We investigated the effects of silvestrol on the expression of a panel of miRs previously linked to AML (miR-29a, miR-29b, miR-29c, miR-181a, miR-34a & miR-155) by quantitative RT-PCR in representative AML cell lines (MV4-11, Kasumi-1, K562). Among the miRs measured, miR-155 was the only one found to be altered, with & gt;40% reduction from baseline following 24h silvestrol treatment (50nM). MiR-155 has a known oncogenic effect in leukemia and is up-regulated in FLT3-ITD (internal tandem duplication)-positive blasts. FLT3 encodes a tyrosine kinase membrane receptor, and the FLT3-ITD mutation is carried by ∼30% of all AML pts. FLT3-ITD supports abnormal myeloid blast proliferation and survival, and predicts dismal outcome. Silvestrol treatment of FLT3-ITD-positive MV4-11 cells resulted in a sustained 40% decrease of miR-155 expression observed as early as 6h post-treatment, as well as down-regulation (80%) of FLT3 mRNA and protein expression compared with vehicle-treated controls as measured by quantitative RT-PCR and immunoblotting respectively. We confirmed this finding by demonstrating a significant reduction of FLT3 surface expression by flow cytometry. These effects were associated with a significant antiproliferative and apoptotic activity of silvestrol on MV4-11 cells (IC50 & lt;10nM at 48h) as measured by MTS assays and annexin/PI staining. We conclude that silvestrol has a potent cytotoxic activity on mir-155 and FLT3-ITD expressing AML cells. The finding that FLT3-ITD expression was down-regulated not only at the protein level but also at the RNA level suggests that the effect of silvestrol on FLT3 mutants may be in part mediated by previously unreported mechanisms other than translational inhibition. Our data support further investigation to elucidate these novel aspects of the antileukemic activity of silvestrol in specific subsets of AML and the design of therapeutic studies testing this compound alone and/or in combination with other tyrosine kinase inhibitors in FLT3-ITD-driven AML. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the 101st Annual Meeting of the American Association for Cancer Research; 2010 Apr 17-21; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2010;70(8 Suppl):Abstract nr 3558.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2010
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  • 10
    In: Blood, American Society of Hematology, Vol. 116, No. 21 ( 2010-11-19), p. 577-577
    Abstract: Abstract 577 Trisomy 8 (+8), the most frequent numerical aberration in AML, occurs in approximately 10% of pts. In one-third of them, +8 is the sole chromosome (chr) anomaly; it is considered to confer an intermediate/adverse prognosis but further studies are required to define the clinical and biologic significance of this cytogenetic abnormality. We assessed the associations of sole +8 with prognostic gene mutations, outcome, and gene and miR expression profiles by comparing a relatively large cohort of sole +8 de novo AML pts (n=80; median, 63 years [y] ; range, 18–84 y) with cytogenetically normal (CN) de novo AML pts (n=483; median, 60 y; range, 18–83 y). CN pts constitute the largest cytogenetic group in AML, with an overall intermediate prognosis modified by molecular markers. Markers analyzed in the present sole +8 cohort included mutations in NPM1, FLT3 (FLT3 internal tandem duplication [ITD], FLT3 tyrosine kinase domain), CEBPA, WT1, IDH1/2, N/KRAS and RUNX1. All pts were enrolled on frontline cytarabine/daunorubicin based CALGB protocols. No pt included in outcome analyses received allogeneic stem cell transplant in 1st complete remission (CR). Median follow-up was 7.1 y for pts alive. Compared with CN pts, sole +8 pts had lower platelet counts (P 〈 .001), white blood counts (WBC; P 〈 .001) and % blood blasts (P=.03), and less often NPM1 mutations (25% v 61%; P 〈 .001). Sole +8 pts frequently had IDH1/2 (38%) and RUNX1 (31%) mutations and FLT3 ITD (28%); aside from one pt, RUNX1 and NPM1 mutations were mutually exclusive (P=.007). Compared with CN pts, sole +8 pts had lower CR rates (64% v 76%; P=.05), and shorter disease-free (DFS; P=.002; 3 y rates, 16% v 33%) and overall survival (OS; P=.006; 3 y rates, 24% v 35%). Interestingly, among sole +8 pts, there were no significant differences in CR rates (P=1.0), DFS (P=.31) or OS (P=.19) between pts ≥60 y and pts 〈 60 y. Indeed, in multivariable analyses of sole +8 pts (Table), age added no prognostic information, while lower hemoglobin was associated with higher CR rates, absence of FLT3 ITD and presence of NPM1 mutations with longer DFS, and having an IDH2 mutation and Caucasian race with longer OS. To gain biologic insights, a gene expression signature using Affymetrix U133 plus 2.0 arrays was derived comparing sole +8 and CN pts; 1079 genes were upregulated and 735 downregulated in sole +8 pts. Less than 1% of the downregulated but 258 (24%) of the upregulated genes mapped to chr 8; the latter constitute 62% of 417 genes located on chr 8 studied. MN1 and chr 8 located BAALC were among genes upregulated in sole +8 pts; high expression of these genes associates with poor outcome in CN AML. Using custom made OSUCCC v4.0 arrays we also derived a signature of 23 miRs differentially expressed between sole +8 and CN pts; miR-107 and miR-342, both upregulated during ATRA treatment in t(15;17) AML, and miR-29b, targeting SP1, DNMT3A/B and MCL1, were upregulated in sole +8 pts. Notably, none of the 13 studied miRs located on chr 8 was significantly (P 〈 .005) upregulated in sole +8 pts. In conclusion, compared with CN AML, sole +8 AML is associated with distinctive clinical and molecular characteristics and a poor outcome, indicating that the additional chr 8 confers specific features. The outcome of sole +8 pts is affected by FLT3 ITD and mutations in NPM1 and IDH2 but not by age. The biologic uniqueness of sole +8 AML is supported by the upregulation of many genes located on chr 8. In contrast, miRs located on chr 8 were not significantly upregulated. Functional studies to assess the significance of these findings are underway.Multivariable Analyses in Sole +8 PtsCRDFSOSn=57n=31n=50POR (95% CI)PHR (95% CI)PHR (95% CI)Hemoglobin, continuous.050.71 (0.61–1.00)––––FLT3 ITD, present v absent––.0044.38 (1.61–11.88)––NPM1, mut v wt––.050.39 (0.16–0.98)––IDH2, mut v wt––––.020.35 (0.15–0.83)Race*, Caucasian v others––––.020.37 (0.15–0.91)Age group, ≥60 y v 〈 60 y.74–.27–.14–OR, odds ratio; HR, hazard ratio; CI, confidence interval; mut, mutated; wt, wild type.Variables considered were those significant at α=.20 in univariable models, ie, for CR, hemoglobin, platelet counts (50×109/L increase), +8 metaphases (≥80% v 〈 80%); for DFS, NPM1, FLT3 ITD, RAS (mut v wt), WBC (50×109/L increase), race; for OS, IDH2, RAS, race, age group. Age group was retained regardless of statistical significance.*Race did not meet the proportional hazards assumption for OS; HR is at 1 y. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2010
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