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  • 1
    In: Blood, American Society of Hematology, Vol. 106, No. 11 ( 2005-11-16), p. 4476-4476
    Abstract: From 1994 to 2000, 984 adults aged from 15 to 55 years with newly diagnosed Acute Lymphoblastic Leukemia (ALL) were eligible for randomization in the multicentric LALA-94 clinical protocol. The t(9;22), t(1;19) and t(4;11) translocations corresponding to BCR-ABL, E2A-PBX1 and MLL-AF4 fusion gene transcripts respectively, were considered as independent poor prognostic factors. Standardized RT-PCR analysis of these fusion gene transcripts were performed by 17 laboratories in order to provide data before the second randomization (J35) on 787 patients. In this multicentric study, validated data were available for therapeutic stratification for 91% of these analysed patients. No false positive RT-PCR was reported. Secondarily to retrospective BCR-ABL FISH, few false BCR-ABL negative RT-PCR were identified, leading to the design of new BIOMED-1 primers for b3-a3 junctions detection. Moreover, the LALA-94 study allowed to define new guidelines for molecular analysis at diagnosis. Like in other studies, the BCR-ABL transcript was found to be the most frequent molecular abnormality in B-ALL (24%) whereas MLL-AF4 and E2A-PBX1 were detected in 5% and 3.5% of B-ALL, respectively. Epidemiological and clinical data of MLL-AF4 and E2A-PBX1 were concordant with previous publications. Interestingly, because of the large number of reviewed patients, the different BCR-ABL subtypes (M-BCR and m-BCR) were statistically characterized by few clinical data. M-BCR subgroups had a higher age than m-BCR (p= 0.016) and occurs especially during the second semester (p= 0.034). Moreover, the comparison of clinical data at diagnosis of M-BCR variants showed that median age of b3a2 was statistically younger than b2a2 (p= 0.04) and that b3a2 occurs more frequently in man (p= 0.02). For the first time, these data suggest that these BCR-ABL breakpoints: m-BCR and M-BCR and also b2a2 and b2a3, are secondary to different physio-oncologic mechanisms even if therapeutic regimens including the same targeted therapy (tyrosine kinase inhibitor) for all BCR-ABL variants is the rule today.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2005
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  • 2
    In: Cancer Medicine, Wiley, Vol. 12, No. 5 ( 2023-03), p. 5656-5660
    Abstract: Personalized medicine is a challenge for patients with acute myeloid leukemia (AML). The identification of several genetic mutations in several AML trials led to the creation of a personalized prognostic scoring algorithm known as the Knowledge Bank (KB). In this study, we assessed the prognostic value of this algorithm on a cohort of 167 real life AML patients. We compared KB predicted outcomes to real‐life outcomes. For patients younger than 60‐year‐old, OS was similar in favorable and intermediate ELN risk category. However, KB algorithm failed to predict OS for younger patients in the adverse ELN risk category and for patients older than 60 years old in the favorable ELN risk category. These discrepancies may be explained by the emergence of several new therapeutic options as well as the improvement of allogeneic stem cell transplantation (aHSCT) outcomes and supportive cares. Personalized medicine is a major challenge and predictions models are powerful tools to predict patient's outcome. However, the addition of new therapeutic options in the field of AML requires a prospective validation of these scoring systems to include recent therapeutic innovations.
    Type of Medium: Online Resource
    ISSN: 2045-7634 , 2045-7634
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
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  • 3
    In: Oncotarget, Impact Journals, LLC, Vol. 5, No. 12 ( 2014-06-30), p. 4384-4391
    Type of Medium: Online Resource
    ISSN: 1949-2553
    URL: Issue
    Language: English
    Publisher: Impact Journals, LLC
    Publication Date: 2014
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  • 4
    In: Oncotarget, Impact Journals, LLC, Vol. 3, No. 4 ( 2012-04-30), p. 490-501
    Type of Medium: Online Resource
    ISSN: 1949-2553
    URL: Issue
    Language: English
    Publisher: Impact Journals, LLC
    Publication Date: 2012
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  • 5
    In: Blood, American Society of Hematology, Vol. 116, No. 21 ( 2010-11-19), p. 439-439
    Abstract: Abstract 439 Background: TET genes have been implicated in DNA demethylation in mammals (Thalihani, Science, 2009; Ito, Nature 2010) and the TET2 gene is mutated in 15–22% of MDS and AML (Kosmider et al. Blood 2009, Nibourel et al. Blood 2010). Azacitidine (AZA) is a hypomethylating agent providing about 50% of responses in MDS and AML with low blast count (Lancet Oncol 2009, JCO 2010). Routine clinical and biological variables can predict OS with AZA, but are poor predictors of response to AZA (Itzykson et al. ASH 2009, and other abstract submitted to ASH 2010), while no consensus genetic predictor of response has been reported so far. Methods: In consecutive MDS (including RAEB-t and CMML) and AML post MDS (with 〉 30% blasts) (AML/MDS) patients treated by AZA in 6 centers, we prospectively sequenced the TET2 gene from PBMC or BMNC DNA samples stored prior to AZA onset. Standard PCR and sequencing procedures were performed as previously described (Delhommeau et al, NEJM 2009), allowing detection of mutations in the entire coding sequence of the TET2 gene (exons 3 to 11). Patients were to receive AZA at the FDA/EMEA approved schedule (75mg/m2/d, 7d/4 weeks). Patients (pts) having received ≥ 1 cycle of AZA and who had bone marrow evaluation after ≥ 4 cycles, or who died or progressed before completion of 4 cycles were considered evaluable (the last 2 groups were considered as treatment failures). Responses were scored according to IWG 2006 criteria for MDS and to Cheson et al. (JCO 2003) for AML. Results: The study population included 103 pts: F/M: 36/67; median age 72 (range 43–91). Diagnosis at AZA onset was MDS in 89 (RAEB-1 n=20, RAEB-2 n=43, RAEB-t n=23, CMML-1 n=2, CMML-2 n=1; IPSS int-1 in 13, int-2 in 38, high in 36, undetermined in 2) and AML/MDS in 14 pts; 29 pts had previously been treated by LD AraC or intensive chemotherapy (IC). Cytogenetics according to IPSS was favorable in 48, intermediate in 20, unfavorable in 31, unknown in 4. 78 pts received the approved and 25 (24%) a reduced AZA schedule (mostly 75 mg/m2 for 5 days every 4 weeks). Median number of cycles was 7 [range 1–39] and median follow-up was 18.2 months. 21 TET2 mutations were found in 17 (17%) pts, including 12 frameshift (all inducing a premature STOP codon), 6 non sense and 3 missense mutations. Predicted TET2 protein length was preserved in 3, and truncated in 14 pts, respectively. Patients with mutated (MUT) TET2 had similar age, diagnosis, BM blast %, neutrophil and platelet counts as those with wild type (WT) TET2 (all p 〉 0.3), but less frequent unfavorable cytogenetics (6% vs 37%, p=0.02) and a trend for higher WBC (p=0.12), lower Hb (p=0.11) and more pretreatment by LD AraC or IC (47% vs 24%, p=0.08) than WT TET2 pts. The 2 groups received AZA at similar schedules (p=0.4) for a median of 6 [1-39] cycles (TET2 WT) or 11 [4-34] cycles (TET2 MUT, p=0.01). Ten WT pts (vs 0 MUT) received 〈 4 AZA cycles due to early progression (in 6 and early death in 4. Best response to AZA (excluding HI, due to inclusion of AML pts) was CR in 24, PR in 1, marrow CR (MDS)/CRi (AML) in 12, stable disease (SD) in 44, progression in 17 and early death in 4. The overall response rate was 11/17 (CR n=7, marrow CR/CRi n= 4; 65%) in MUT TET2 pts, and 26/86 (CR n=17, PR n=1, marrow CR/CRi n=8; 30%) in WT TET2 pts (p=0.01). This difference remained significant after adjusting on cytogenetic risk and number of AZA cycles received (p=0.03). Median response duration was similar in the two groups (TET2 WT: 7.1 months, TET2 MUT: 9.2 months, p=0.7). An additional 15 pts (3 TET2 MUT and 12 TET2 WT) achieved SD with HI. Considering HI as response, including in AML pts, response was 14/17 (82%) in TET2 MUT pts vs 39/86 (45%) in TET2 WT pts (p=0.007). Median OS was similar in TET2 WT (15.3 months) and TET2 MUT pts (16.2 months, p=0.4). Finally, response (excluding HI, ie. CR/PR/mCR) was 1/3 (33%) in the missense group vs 10/14 (71%) in pts with a predicted truncated TET2 protein. Conclusion: In this cohort of MDS and AML/MDS, TET2 mutation was associated to higher response rate to AZA, independent of conventional cytogenetics and duration of AZA exposure, but had no influence on survival. Prediction of response by TET2 sequencing may thus complement prognostic factors of survival obtained by routine clinical and biological variables (Itzykson et al, other abstract submitted to ASH 2010). TET2 mediated chromatin changes may modulate the sensitivity of MDS to AZA, opening new perspectives in the understanding of AZA mode of action and novel therapeutic strategies. Disclosures: Fenaux: Celgene: Honoraria, Research Funding; Novartis: Honoraria, Research Funding; Janssen Cilag: Honoraria, Research Funding; ROCHE: Honoraria, Research Funding; AMGEN: Honoraria, Research Funding; GSK: Honoraria, Research Funding; Merck: Honoraria, Research Funding; Cephalon: Honoraria, Research Funding. Fontenay:Celgene: Research Funding.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2010
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  • 6
    In: Blood, American Society of Hematology, Vol. 120, No. 21 ( 2012-11-16), p. 701-701
    Abstract: Abstract 701 Background: AZA is a current reference treatment for higher-risk MDS patients, also active in AML patients unfit for intensive chemotherapy. However, no biological marker predictive of AZA resistance has been clearly established. In addition, patients not responding to AZA or relapsing after a response have very poor outcome (Prebet, JCO, 2011), and require new treatments. We have generated SKM1-R, an AZA resistant cell line (Cluzeau et al., Cell cycle 2011), that exhibits increased expression of BCL2L10, an anti-apoptotic Bcl-2 family member, as a likely cause of resistance (Yasui et al., Cancer Research 2004). We tried to correlate BCL2L10 expression with response to AZA in MDS and AML patients and analysed the effect of ABT 737 a peptidomimetic inhibitor binding the BH3 domain of the BCL-2 family of proteins (especially BCL2L10), on patient leukemic cells expressing BCL2L10. Methods: In two cohorts of 77 MDS or AML patients treated by AZA (75mg/m2/d, 7days every 4 weeks), we quantified the percentage of BCL2L10 positive bone marrow (BM) cells using flow cytometry. Cytometry assay was performed after several steps of fixation, permeabilization, primary incubation with an anti-BCL2L10 antibody (cell signalling) and secondary incubation with a donkey anti-Rabbit FITC-antibody. The first cohort included fresh BM samples from 32 higher-risk MDS (www.clinicaltrials.gov, NCT01210274) or AML patients treated with AZA. The second one is composed of 45 frozen samples from low risk MDS, higher-risk MDS or AML treated by AZA. Response and relapse after AZA initial response were assessed by IWG 2006 criteria. Cell metabolism (XTT assay) and Propidium iodide (PI) staining were performed in 10 patients treated with AZA (5 sensitive and 5 resistant) with or without ABT-737 (Abbott). Resistance to AZA was defined by primary failure or relapse after initial sensitivity to AZA Results: In the first patient cohort, the mean value for BM cells from AZA-resistant patients was significant higher than AZA-sensitive patients (85% vs 0% respectively, p 〈 0.0001). In the second cohort, retrospective comparison of BM samples from low risk MDS patients, AZA-sensitive or AZA-resistant patients showed that the counts of BCL2L10 positive cells were also significant different (0%, 10% and 33% respectively, p 〈 0.0001). In sub-group analysis on patients from cohort 2, we observed that quantification of BCL2L10 positive cells could predict failure to AZA at diagnosis (10% in sensitive patients vs 33% in resistant patients, p=0.023) and relapse after response to AZA (14% in AZA responding patients without relapse vs 43% in AZA responding patients who relapsed, p=0.0002). Using a cut-off of 50% BCL2L10 positive cells in patients from cohort 1, patients with 〉 50% of BCL2L10 positive cells had a 3 months OS at 51% compared to 95% in patients with ≤ 50% of BCL2L10 positive cells (p=0.0016).We next used high doses of ABT-737, alone or in combination with AZA. Cell metabolism (XTT assay) and Propidium iodide (PI) staining in the presence or absence of ABT 737 showed no effect in AZA-sensitive patients. By contrast, we observed a significant increase of PI positive cells and a significant decrease of cell metabolism in AZA-resistant patient samples stimulated with the combination of AZA + ABT-737 vs AZA alone. Conclusion: In this work, quantification of BCL2L10 positive cells by flow cytometry was correlated with resistance and survival with AZA treatment in MDS and AML. This possible biomarker of resistance will have to be tested prospectively. Inhibition of BCL2L10 positive cells by ABT-737 suggests that this drug, or other drugs targeting more selectively BCL2L10 could be proposed in combination with AZA in such patients. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2012
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  • 7
    In: Blood, American Society of Hematology, Vol. 120, No. 21 ( 2012-11-16), p. 2809-2809
    Abstract: Abstract 2809 Background: TP53 gene mutations, frequent in AML and MDS with complex karyotype, have recently been found in about 20% of lower risk MDS with del 5q, where they possibly conferred resistance to lenalidomide (LEN), and a higher risk of AML progression (Jadersten, JCO, 2011). We assessed the incidence and prognostic value of TP53 mutations in 79 lower risk MDS with del 5q, treated or not with LEN, and analysed in early disease phase or after progression to higher risk MDS or AML. Methods: IPSS low and int 1 (Lower) risk MDS with del 5q were analysed at diagnosis or onset of LEN (“early phase”) and/or after progression to IPSS high or int 2 (higher) risk MDS or AML. LEN was administered at 5 or 10 mg/d during 16 weeks, and continued in erythroid responders until relapse or disease progression. TP53 mutations were detected by the functional FASAY technique, assessing the transcriptional activity of p53 by co-transfecting an open gap repair plasmid with the product of amplification of TP53 from patients in yeasts whose growth is dependent on p53 functionality. The detection limit of this technique is around 10–15% (Flaman, PNAS 1995). Mutations found by FASAY were confirmed by direct sequencing, using Sanger method and /or (more recently) high sensitivity (1%) Next Generation Sequencing (NGS) by pyrosequencing (GS Junior System-Roche, with the IRON II plate design). Results: 79 lower risk MDS with del 5q from 6 French centers of the GFM were analyzed, including 62 at diagnosis or onset of LEN (“early phase”), and 17 after progression to higher risk MDS or AML (5 of the latter were also retrospectively analysed on early phase samples). Overall, 28 (35%) of the 79 patients had TP53 mutation, including 16 (26%) of the 62 pts analyzed at early phase and 12 (70%) of the 17 evaluated after higher risk MDS or AML progression (p= 0.001). The 62 early phase pts had marrow blasts 〈 5% and 5–9% in 91 and 9% of the cases, isolated del 5q, del 5q+1 and del5q+ 〉 1 (complex karyotype) in 84, 14 and 2% of the cases, and IPSS low and int 1 in 80 and 20% of the cases, respectively. No significant difference was found between mutated and non mutated cases for baseline characteristics including gender, age, WHO classification, cytogenetic complexity and IPSS. In the 5 pts analysed after progression where early phase samples were available, who all had received LEN, 4 had TP53 mutation at progression. In all of them, TP53 mutation was already detectable during early phase. However, the percentage of mutated colonies found by FASAY increased with progression, from 18 to 75%, 26 to 55%, 12 to 87% and 13 to 23%, respectively, showing an increase of the size of the mutated clone at progression. Among the 43 pts analyzed in early phase who received LEN (we excluded the 5 pts analysed after progression where early phase samples were available, to avoid bias), 36 (84 %) had isolated del 5q, 6 (14%) del 5q+1, and 1 (2%) had complex karyotype. IPSS was low in 73% and int-1 in 27%. 12/43 (28%) had TP53 mutation. 63% of the 43 pts achieved erythroid response, and 9 (47%) of the 19 pts evaluable at erythroid response achieved cytogenetic response. Erythroid response was seen in 45% mutated vs 71% non mutated cases (p= 0.258). Cytogenetic response was seen in 1/8(12%) mutated vs 8/11 (73%) non mutated cases (p=0.020). In those 43 pts who received LEN, the cumulative incidence (CI) of AML evolution, with death as a competitive event, did not significantly differ between patients with or without TP53 mutation (3 year CI of 35% vs 30%, p=0.33). Finally, in those pts, TP53 mutational status had no significant impact on OS (median 49 months in mutated pts vs not reached in non mutated pts, p=0.48, figure 1). Conclusion: We confirm the presence of TP53 mutations in about 25 % of lower risk MDS with del 5q analysed in early disease phase. TP53 mutations, in those patients, were not correlated with other baseline parameters. When treated with LEN, mutated cases had similar hematological response, lower cytogenetic response but no significant difference in progression to higher risk MDS or AML and survival compared to non mutated cases. The high incidence of TP 53 mutations at progression to higher risk MDS/AML (70%), and the increase in the TP53 mutated clone size observed during progression in pts with a baseline mutation support the pathophysiological importance of TP53 mutations in disease progression in lower risk MDS with del 5q. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2012
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  • 8
    In: Blood, American Society of Hematology, Vol. 132, No. Supplement 1 ( 2018-11-29), p. 2806-2806
    Abstract: BACKGROUND Post myeloproliferative neoplasms (MPN) acute myeloid leukemia (AML) occurs respectively in 1.5%, 7.0% and 11% of patients with essential thrombocytosis (ET), polycythemia vera (PV) and primary myelofibrosis (PMF). This subgroup of AML has very poor prognosis and are often excluded from clinical trials. Therefore, only few cohorts including molecular data are available. MATERIAL AND METHODS We retrospectively collected data from 111 patients treated in four centers in France for post MPN-AML. Clinical, molecular and treatment information was available for all patients at AML and MPN stages. DNA was extracted from samples at diagnosis of MPN chronic phase, at diagnosis of AML phase and after induction treatment. JAK2-V617F mutations were identified by qPCR (Ipsogen® MutaQuant kit, Qiagen, Germany), MPL-W515L/K mutations were identified by PCR (Ipsogen® MutaScreen kit, Qiagen, Germany) and CALR mutations were identified by conventional sequencing (Applied Biosystems, 3500Genetic Analyzer). NGS on 36 genes using Ampliseq librairy and Ion Proton sequencing (Thermofisher, Waltham, MA, USA) were performed in 96/111 patients. Overall response rate (ORR) was defined by complete remission (CR), CR with incomplete hematologic recovery (CRi), partial remission (PR) and stable disease (SD). Overall survival (OS) was calculated from the date of AML diagnosis to the date of death or last follow-up. All statistical analyses were performed using SPSS v.22 software (IBM SPSS Statistics). RESULTS 111 patients treated for post MPN-AML were retrospectively included in this study. Sex ratio M/F was 54%/46%. Median age at AML diagnosis was 66 years (28-89, range). Cytogenetic categories were favorable, intermediate and adverse in 2 (2%), 51 (46%) and 47 (42%) patients, respectively. 25/111 (23%) patients had a monosomal karyotype (MK). Median number of additional mutations excluding from JAK2/MPL/CALR mutations was 2 (0-6, range). The most frequent additional mutations were TP53 (23%), ASXL1 (17%), TET2 (13%), SRSF2 (10%), DNMT3A (8%), SF3B1 (8%) and RUNX1 (8%). Only 2 patients were mutated for NPM1 and 2 and 4 patients were FLT3-ITD and FLT3-TKD, respectively. Prior MPN were PV, ET and PMF in 20%, 34% and 46% of patients, respectively. First line treatment was intensive chemotherapy (IC) for 61 (55%) patients, hypomethylating agents (HMA) for 10 (9%) or other treatments including best supportive care, cytoreduction for the other ones. 24/111 (22%) underwent to ASCT. ORR was 54% (with 30/71 (42%) in CR/CRi) in patients treated by IC or HMA. We did not identify factors predicting a higher rate of CR/CRi. OS was 12 months [6-18] and was not influenced by transplant, cytogenetic categories or by the type and allele frequencies of JAK2/CALR/MPL mutations. OS was significantly longer in the group treated with HMA as compared to IC (10 versus 46 months, respectively, p=0.006); in patients with prior PV as compared to ET or MF (26 months [0-57] versus 10 months [7-13] versus 10 months [4-16] respectively, p=0.07) and in patients with presence of additional mutations other than JAK2/CALR/MPL (5 months [0-12] versus 46 months [32-60] in 38 patients without mutation versus 58 patients with presence of at least one mutation, respectively, p=0.04). By multivariate analysis, only presence of additional mutations was predictive for OS with a hazard ratio (HR) = 0.42 [0.18-0.97] (p=0.04). Finally, we followed the VAFs of JAK2 in seven patients before and after IC. We observed in 2 patients an increase of JAK2 clone correlated with CR whereas no variation of VAFs was associated with absence of CR. CONCLUSIONS In conclusion, we confirmed the poor prognosis of post MPN AML. Classical AML prognostic factors were not validated in our cohort. We identified the presence of mutations other than JAK2/MPL/CALR as the main prognostic factor whereas post-PV AML appeared to do better than post-ET and post-PMF AML. The very poor result of IC with or without ASCT highlights the need to develop specific clinical trials in this subgroup of AML. Disclosures Kuykendall: Celgene: Honoraria; Janssen: Consultancy. Sallman:Celgene: Research Funding, Speakers Bureau. Cluzeau:CELGENE: Consultancy; MENARINI: Consultancy; JAZZ PHARMA: Consultancy.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2018
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  • 9
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 12, No. 1 ( 2021-10-29)
    Abstract: Acute myeloid leukemia (AML) is a hematological malignancy with an undefined heritable risk. Here we perform a meta-analysis of three genome-wide association studies, with replication in a fourth study, incorporating a total of 4018 AML cases and 10488 controls. We identify a genome-wide significant risk locus for AML at 11q13.2 (rs4930561; P  = 2.15 × 10 −8 ; KMT5B ). We also identify a genome-wide significant risk locus for the cytogenetically normal AML sub-group (N = 1287) at 6p21.32 (rs3916765; P  = 1.51 × 10 −10 ; HLA ). Our results inform on AML etiology and identify putative functional genes operating in histone methylation ( KMT5B ) and immune function ( HLA ).
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
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  • 10
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 13, No. 1 ( 2022-01-04)
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
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