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  • 1
    In: Blood, American Society of Hematology, Vol. 115, No. 23 ( 2010-06-10), p. 4664-4670
    Abstract: Although the effects of human leukocyte antigen (HLA) locus matching on clinical outcome in unrelated hematopoietic stem cell transplantations have been characterized, the biologic implications of HLA haplotypes have not been defined. We demonstrated the genetic fixity of Japanese conserved extended haplotypes by multi–single nucleotide polymorphism analysis in 1810 Japanese donor-recipient pairs matching with HLA-A, -B, -C, -DRB1, and -DQB1 alleles. Three major Japanese conserved extended haplotypes (named HP-P1, HP-P2, and HP-P3) were essentially completely conserved at least in the 3.3-Mb HLA region from HLA-A to -DPB1, and extended far beyond HLA-A. The risk of acute graft-versus-host disease (GVHD) of these HLA haplotypes was assessed with multivariate Cox regression in 712 patients transplanted from HLA fully (HLA-A, B, C, DRB1, DQB1, and DPB1) matched unrelated donors. HP-P2 itself reduced the risk of grade 2 to 4 acute GVHD (hazard ratio [HR] = 0.63; P = .032 compared with HP-P2-negative), whereas HP-P3 tended to increase the risk (HR = 1.38; P = .07). Among 381 patients with HP-P1, HP-P1/P3 (HR = 3.35; P = .024) significantly increased the risk of acute GVHD compared with homozygous HP-P1. This study is the first to demonstrate that a genetic difference derived from HLA haplotype itself is associated with acute GVHD in allogeneic hematopoietic stem cell transplantation.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
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    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2010
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    detail.hit.zdb_id: 80069-7
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  • 2
    In: Molecular Cancer Therapeutics, American Association for Cancer Research (AACR), Vol. 10, No. 11_Supplement ( 2011-11-12), p. B93-B93
    Abstract: A considerable proportion of lung adenocarcinoma (LADC) cases develop through activation of oncogenes, i.e., somatic mutations in either the EGFR (10–40%) or KRAS (10–20%) genes, or fusion of the ALK gene (5%) with the EML4 or KIF5B genes, in a mutually exclusive manner. Tyrosine kinase inhibitors that target EGFR and ALK proteins are particularly effective for treating LADCs carrying EGFR mutations and ALK fusions, respectively. In this study, whole transcriptome sequencing (RNA sequencing) of 30 Japanese LADCs and three adjacent non-cancerous lung tissues was performed to identify novel chimeric fusion transcripts that could be potential targets for therapy. Analysis of more than 2 × 107 paired-end reads obtained by RNA sequencing and subsequent validation by Sanger sequencing of the reverse transcription (RT)-PCR products identified EML4-ALK fusions in two cases and a few other gene fusions in each single case. The two EML4-ALK positive LADC cases were negative for EGFR and KRAS mutations and also negative for other gene fusions. Therefore, the authenticity of ALK fusions as a driver mutation was validated. The prevalence and oncogenic property of novel gene fusions identified are being studied. Citation Format: {Authors}. {Abstract title} [abstract]. In: Proceedings of the AACR-NCI-EORTC International Conference: Molecular Targets and Cancer Therapeutics; 2011 Nov 12-16; San Francisco, CA. Philadelphia (PA): AACR; Mol Cancer Ther 2011;10(11 Suppl):Abstract nr B93.
    Type of Medium: Online Resource
    ISSN: 1535-7163 , 1538-8514
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2011
    detail.hit.zdb_id: 2062135-8
    SSG: 12
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  • 3
    In: Blood, American Society of Hematology, Vol. 122, No. 21 ( 2013-11-15), p. 708-708
    Abstract: Although the effect of allele matching of each HLA locus on the clinical outcome of unrelated hematopoietic stem cell transplantation (UR-HSCT) has been characterized, the effect of HLA allele or haplotype (HP) itself has not been well elucidated. The HLA region is recognized as one of the most important genetic regions associated with human disease, especially autoimmune and infectious diseases. We therefore hypothesized that the immunological response and the clinical outcome following UR-HSCT depend not only on HLA allele matching but also on the HLA allele itself or HLA-linked genetic background of the patient and donor. Methods We analyzed 5237 patients who received T-cell-replete bone marrow transplants from serologically HLA-A, -B, and -DR antigen-matched unrelated donors facilitated by the Japan Marrow Donor Program between 1993 and 2008. HLA-A, -B, -C, -DRB1, -DQB1, and -DPB1 alleles were retrospectively genotyped. HLA allele frequencies were calculated by direct counting, and multi-locus HLA HP frequencies were estimated using the maximum-likelihood method with EM algorithm of PyPop software. Patients were stratified by HLA-matching status into a full match (FM) group (12/12-matched, n=733) and a mismatch (MM) group (≤11/12-matched, n=4504). The effect of HLA alleles or HPs with a frequency greater than 5% on acute graft-versus-host disease (aGVHD) and overall survival (OS) was analyzed using a multivariate competing risk regression model. The results are expressed as hazard ratios (HRs) comparing specific allele/haplotype-positive group to -negative group. Results For each allele, the number of HLA alleles significantly associated with aGVHD (p 〈 .01) in the MM group, were as follows: HLA-A (1 of 10), HLA-B (2 of 17), HLA-C (3 of 15), HLA-DRB1 (1 of 17), HLA-DQB1 (1 of 11) and HLA-DPB1 (0 of 10). In contrast, only one HLA-DPB1 allele was significantly associated with aGVHD in the FM group. The following patient and donor HLA alleles were significantly associated with a reduced risk of aGVHD in the MM group: HLA-A*33:03, C*14:03, B*44:03, DRB1*13:02, and DQB1*06:04. These alleles are located on a common HP (HP-P2) in the Japanese population, which showed a similar effect on grade II-IV (n=534; HR 0.79; p=.001) and III-IV (HR 0.70; p=.004) aGVHD. Strong linkage disequilibrium (LD) hampered determination of the allele responsible for the reducing risk of aGVHD. A significant association with an increased risk of grade III-IV aGVHD and a poor OS was observed in patient HLA-B*51:01 (n=756; aGVHD: HR 1.51, p 〈 .001; OS: HR 1.19, p=.003, respectively) and donor HLA-B*51:01 (n=773; HR 1.46, p 〈 .001; HR 1.15, p=.015) , patient HLA-C*14:02 (n=599; HR 1.55, p 〈 .001; HR 1.19, p=.007), and donor HLA-C*15:02 (n=226; HR 1.62, p 〈 .001; HR 1.38, p=.001) in the MM group. HLA-B*51:01 demonstrated strong positive LD with HLA-C*14:02 and -C*15:02. A significant association with an increased risk of grade III-IV aGVHD and a poor OS was also observed in patient HLA-C*14:02-B*51:01 (n=586; HR 1.52, p 〈 .001; HR 1.19; p=.007) and donor HLA-C*15:02-B*51:01 (n=106; HR 1.98, p 〈 .001; HR 1.53, p=.001). HLA-DPB1*04:02 was the only allele associated with an increased risk of grade II-IV aGVHD in the FM group (n=173; HR 1.64; p=.001). HLA-DPB1*04:02 was linked to two distinctive extended HPs, and the effect of these HPs on aGVHD was stronger in the patients with HLA-DRB1*04:05-DQB1*04:01-DPB1*04:02 (n=60; HR 2.15; p 〈 .001) than in those with HLA-DRB1*01:01-DQB1*05:01-DPB1*-DPB1*04:02 (n=125; HR 1.40; p=.035). HLA-DRB1*04:05-DQB1*04:01-DPB1*04:02 was also significantly associated with poor OS in the FM group (HR 1.65; p=.01). HP-P2 showed a tendency to reduce the risk of grade II-IV aGVHD in the FM group (n=119; HR 0.70; p=.075). Conclusion Patient- and donor-specific HLA alleles and HPs themselves contribute to the risk of aGVHD and survival after UR-HSCT. In addition to HLA-B*51:01 being strongly associated with Bechet’s disease, we found this allele to be associated with an increased risk of aGVHD in UR-HSCT. Given that different HLA alleles and HPs were identified in the FM and MM groups, multiple mechanisms, including HLA-mismatch induced alloreactivity, might be involved in the development or exacerbation of aGVHD. These findings suggest that, in addition to HLA-matching status, consideration of patient and donor HLA alleles and haplotypes will provide predictive risk factors for UR-HSCT. Disclosures: No relevant conflicts of interest to declare.
    Type of Medium: Online Resource
    ISSN: 0006-4971 , 1528-0020
    RVK:
    RVK:
    Language: English
    Publisher: American Society of Hematology
    Publication Date: 2013
    detail.hit.zdb_id: 1468538-3
    detail.hit.zdb_id: 80069-7
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