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  • 1
    In: Annals of Surgical Oncology, Springer Science and Business Media LLC, Vol. 24, No. 3 ( 2017-3), p. 850-859
    Type of Medium: Online Resource
    ISSN: 1068-9265 , 1534-4681
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2017
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  • 2
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2018
    In:  Cancer Research Vol. 78, No. 13_Supplement ( 2018-07-01), p. 4351-4351
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 78, No. 13_Supplement ( 2018-07-01), p. 4351-4351
    Abstract: Background: Intrahepatic cholangiocarcinoma(ICC) accounts for about 10% of all primary liver cancer. South Asia and a part of Chile, but in recent years it has been increasing in other areas including Europe and the United States. The only potentially curative treatment for patients who have a resectable tumor is surgery. Unfortunately, even after curative-intent surgery, the clinical outcomes of patients undergoing liver resection are disappointing, with a 5-year survival rate of 20% to 35%. Furthermore, the role of the other treatments, including systemic chemotherapy and radiotherapy, remain poorly defined and have been reported to have a favorable therapeutic effect. In this study, we reveals the intratumoral heterogeneity and process of evolution of intractable ICC without fully genomic understanding. Material and method: Surgical specimens of 10 patients with resection of ICC in curative intention were acquired between 10/2014 and 5/2016. The average tumor size was 47 mm(range 30-80 mm). We obtained 57 samples at 3-9 lesions for each case, and performed whole exome sequencing using the next generation sequencer (HiSeq2500). Multiregional analysis was performed respectively on these cases, and we investigated intratumoral heterogeneity of ICC. Furthermore, we guessed the process of clonal evolution of ICC from the result of whole exome sequencing. Result: We defined "Founder mutation" as only a mutation present in all samples in each case , and defined “Progressor mutation” as several mutations present in some samples in each case. Furthermore, we classified “Progressor mutation” as “Shared mutation” present in several samples in each case but not all and “Unique mutation” present in one sample in each case). In 10 cases, mean number of Founder, Unique and Shared mutation were 53%(range 24-74%), 18%(range 5-40%), and 29%(range 6-54%), respectively, and this indicated intratumoral heterogeneity in ICC. In addition, Founder mutation mainly including TP53, SMAD4, and NRAS were common in 2 cases, but no common Founder mutation was observed in over 3 cases, so this indicated intratumoral heterogeneity in ICC. This results leaded to the process of clonal evolution during tumor formation, describing the evolutionary trees. Conclusion: In this study, multiregional analysis was performed on samples of ICC, and intratumoral heterogeneity and the process of clonal evolution were evaluated. This result confirms the resistance to current treatment and it seems that it is necessary to search for further therapeutic targets. Citation Format: Akihiro Kitagaw, Hisateru Komatsu, Yosuke Kuroda, Syuhei Ito, Takaaki Masuda, Hidetoshi Eguchi, Hidetoshi Eguchi, Yuichiro Doki, Masaki Mori, Koshi Mimori. Intratumoral heterogeneity and process of evolution of intrahepatic cholangiocarcinoma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 4351.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2018
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  • 3
    In: Oncology, S. Karger AG, Vol. 98, No. 7 ( 2020), p. 501-511
    Abstract: 〈 b 〉 〈 i 〉 Introduction: 〈 /i 〉 〈 /b 〉 Anti-programmed cell death 1 (PD-1) therapies have shown promising clinical activity against gastric cancer (GC). We evaluated the clinical significance of immune-related gene expression in GC tissues to better understand the tumor immune microenvironment. 〈 b 〉 〈 i 〉 Methods: 〈 /i 〉 〈 /b 〉 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-1 ligand 1 (PD-L1) 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels and clinicopathological factors, including survival, were examined by quantitative RT-PCR in 155 GC patients who underwent surgery. PD-1 and PD-L1 expression in tumor tissue from 24 GC patients was investigated by immunohistochemical analysis. 〈 b 〉 〈 i 〉 Results: 〈 /i 〉 〈 /b 〉 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-L1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels were significantly lower in tumor tissue than in normal tissue ( 〈 i 〉 p 〈 /i 〉 & #x3c; 0.0001, 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05, and 〈 i 〉 p 〈 /i 〉 & #x3c; 0.0001). GC patients with low 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-L1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels had significantly poorer overall survival (OS) than those with high 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-L1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels, respectively ( 〈 i 〉 p 〈 /i 〉 & #x3c; 0.001, 〈 i 〉 p 〈 /i 〉 & #x3c; 0.01 and 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05). Low 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-L1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels were more significantly associated with poor prognosis in undifferentiated-type GC patients than in differentiated-type GC patients ( 〈 i 〉 PD-1 〈 /i 〉 : differentiated 〈 i 〉 p = 〈 /i 〉 0.0071 vs. undifferentiated 〈 i 〉 p = 〈 /i 〉 0.0024; 〈 i 〉 PD-L1 〈 /i 〉 : 〈 i 〉 p = 〈 /i 〉 0.6527 vs. 〈 i 〉 p 〈 /i 〉 & #x3c; 0.0001; 〈 i 〉 CD8 〈 /i 〉 : 〈 i 〉 p = 〈 /i 〉 0.4465 vs. 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05). Multivariate analysis showed that lymph node metastasis, peritoneal dissemination, distant metastasis, low 〈 i 〉 PD-1 〈 /i 〉 mRNA levels and low 〈 i 〉 CD8 〈 /i 〉 mRNA levels were independent prognostic factors for worse OS (low 〈 i 〉 PD-1 〈 /i 〉 mRNA level: OR 2.16, 95% CI 1.10–4.58, 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05; low 〈 i 〉 CD8 〈 /i 〉 mRNA level: OR 2.55, 95% CI 1.12–6.90, 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05). 〈 i 〉 PD-1 〈 /i 〉 and 〈 i 〉 PD-L1 〈 /i 〉 mRNA levels in immune cells were significantly associated with PD-1 and PD-L1 protein levels (both 〈 i 〉 p 〈 /i 〉 & #x3c; 0.05), respectively. 〈 b 〉 〈 i 〉 Conclusions: 〈 /i 〉 〈 /b 〉 〈 i 〉 PD-1 〈 /i 〉 , 〈 i 〉 PD-L1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels may reflect antitumor immunity in GC, and low 〈 i 〉 PD-1 〈 /i 〉 and 〈 i 〉 CD8 〈 /i 〉 mRNA levels are potential predictive biomarkers for poor prognosis in GC patients who underwent surgery.
    Type of Medium: Online Resource
    ISSN: 0030-2414 , 1423-0232
    RVK:
    Language: English
    Publisher: S. Karger AG
    Publication Date: 2020
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  • 4
    In: Annals of Surgical Oncology, Springer Science and Business Media LLC, Vol. 25, No. 3 ( 2018-3), p. 745-753
    Type of Medium: Online Resource
    ISSN: 1068-9265 , 1534-4681
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
    detail.hit.zdb_id: 2074021-9
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  • 5
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 77, No. 13_Supplement ( 2017-07-01), p. 4411-4411
    Abstract: Background: A recent study reported the loss of gluconeogenic capacity in hepatocellular carcinoma (HCC). Fructose-1,6-bisphosphatase (FBP1), the rate-limiting enzyme in gluconeogenesis, is reduced in expression in some cancers. However, the role of FBP1 in altered glucose metabolism in HCC was unclear. Therefore, the objective of this study was to examine the function and clinical significance of FBP1 expression in HCC. Materials and Methods: First, three independent cohorts totaling 594 cases of HCC (118 real-time RT-PCR data from our institution, 242 expression array data from GSE14520, and 234 RNA-sequencing data from The Cancer Genome Atlas (TCGA)) were analyzed to address clinical significance. Data from methylation arrays, SNP arrays, and whole-exome sequencing were also analyzed to investigate the regulation of FBP1 expression in the TCGA cohort. Second, we analyzed mRNA expression, promoter methylation, and DNA copy number profiles of 967 human cancer cell lines, including 27 liver cancer, in the Cancer Cell Line Encyclopedia. Third, we established HCC cell lines stably expressing FBP1 or empty vector control. We performed sphere formation assay and xenograft studies to evaluate the role of FBP1 on HCC progression. Furthermore, in order to assess the effect of FBP1 on altered glucose metabolism, isotopomer distribution analysis was performed using [U-13C] glucose. Finally, to validate the effects of FBP1 expression on survival, risk of recurrence, and glucose metabolism, we performed gene set enrichment analysis (GSEA). Results: Lower FBP1 expression associated with advanced tumor stage, poor overall survival (OS), and poor recurrence-free survival (RFS) in three independent HCC cohorts. For either OS or RFS in each cohort, this prognostic impact persisted, even after adjusting for tumor stage. In HCC cell lines, where endogenous FBP1 expression is low, engineering its ectopic overexpression inhibited tumor growth and intracellular glucose uptake by reducing aerobic glycolysis. In patient specimens, promoter methylation and copy-number loss of FBP1 were independently associated with decreased FBP1 expression. Similarly, FBP1 downregulation in HCC cell lines was also associated with copy-number loss. HCC specimens exhibiting low expression of FBP1 had a highly malignant phenotype, including large tumor size, poor differentiation, impaired gluconeogenesis, and enhanced aerobic glycolysis. The effects of FBP1 expression on prognosis and glucose metabolism were confirmed by GSEA. Conclusion: Our findings established that FBP1 downregulation in HCC contributed to tumor progression and poor prognosis by altering glucose metabolism, and they rationalize further study of FBP1 as a prognostic biomarker and therapeutic target in HCC patients. Citation Format: Hiroaki Wakiyama, Hidenari Hirata, Keishi Sugimachi, Takaaki Masuda, Naoki Hayashi, Yohsuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Kotaro Terashima, Katsumi Sakamoto, Masakazu Hirakawa, Hiroshi Honda, Koshi Mimori. Loss of fructose-1,6-bisphosphatase expression induces altering glucose metabolism and tumor progression in hepatocellular carcinoma [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 4411. doi:10.1158/1538-7445.AM2017-4411
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2017
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  • 6
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 77, No. 13_Supplement ( 2017-07-01), p. 1972-1972
    Abstract: Background Colorectal cancer (CRC) is one of the most prevalent types of cancer. The high mortality rate of CRC is a serious problem. Hence it is urgently necessary to identify novel molecular target to improve the mortality rate. Amplification of chromosome 7p is frequent in CRC, and it has been considered to harbor driver genes that promote tumorigenesis or tumor progression by the gain of function. The aim of this study is to identify novel candidate driver genes on chromosome 7p and to clarify the clinical significance of their expression in CRC. Material and Methods 1. We selected the candidate genes that satisfied the following criteria using CRC data from The Cancer Genome Atlas (TCGA). 1) The DNA copy number and mRNA expression is positively correlated with each other, 2) overexpressed in the tumor tissues compared to the normal tissues. 2. The mRNA expression of the candidate genes was measured in 108 surgically-resected CRC tissues and the paired normal tissues in our hospital by quantitative RT-PCR. The differences of mRNA expression between CRC tissues and normal tissues were analyzed by Mann Whitney U-test. 3. Survival analysis between high and low expression group of the candidate genes was performed by Kaplan-Meier method. Correlation between the mRNA expression of the candidate genes and the clinicopathological factors were analyzed by Fisher’s exact test. 4. We performed Gene Set Enrichment Analysis (GSEA) in CRC data from TCGA to clarify the correlation between the candidate genes and gene sets that are associated with tumorigenesis or tumor progression. Results DEAD Box Helicase56 (DDX56), ATP-dependent RNA helicases involved in several aspects of RNA metabolism including mRNA splicing and transport, transcription, translation and remodeling of ribonucleoprotein complexes, was satisfied with the criteria. The expression of DDX56 was significantly higher in CRC tissues than in normal colon tissues (p & lt;0.005), and it correlated with lymphatic invasion (p=0.02), and distant metastasis (p=0.03). The high DDX56 expression group had a significantly poorer prognosis than the low expression group (p=0.03). On multivariate analysis, high DDX56 expression was an independent prognostic factor affecting OS (p=0.013) with hazard ratios (95% CI) of 2.32 (1.20-4.48) among clinicopathological factors. GSEA showed that DDX56 expression was positively correlated with mitotic cell cycle progression and spliceosome. Conclusions We identified DDX56 as a promising driver gene of CRC on chromosome 7p. DDX56 expression was positively associated with lymphatic invasion and distant metastasis, and was an independent poor prognostic factor. Furthermore, DDX56 may be involved in tumor progression through stimulating cell-cycle. DDX56 could be a therapeutic target as well as a poor prognostic biomarker in CRC. Note: This abstract was not presented at the meeting. Citation Format: Yuta Kouyama, Yushi Ogawa, Takaaki Masuda, Yukihiro Yoshikawa, Miwa Noda, Hiroaki Wakiyama, Kuniaki Sato, Sho Nambara, Qingjiang Hu, Shinya Kidogami, Tomoko Saito, Shotaro Sakimura, Naoki Hayashi, Yohsuke Kuroda, Shuhei Ito, Hidetoshi Eguchi, Koshi Mimori. Identification of novel candidate driver genes of colorectal cancer on chromosome 7p [abstract]. In: Proceedings of the American Association for Cancer Research Annual Me eting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 1972. doi:10.1158/1538-7445.AM2017-1972
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2017
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  • 7
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 78, No. 13_Supplement ( 2018-07-01), p. 502-502
    Abstract: Distant metastasis is the leading cause of mortality in patients with malignant tumor including colorectal cancer (CRC). A primary tumor can create a premetastatic niche in distant organs to facilitate the development of metastasis by communicating with host cells. However, little is known about the communicating mechanism is known. Understanding this mechanism should uncover a new field of cancer therapy through the targeting of the interaction between tumor and host. In this study, we focused on circulating microRNAs (miRs) as the communication tool between host and tumor cells that were mainly carried by exosomes in circulation. As a result of gene expression microarray and gene set enrichment analysis, we identified miR-203 as a putative signaling molecule between tumors and monocytes in metastatic CRC patients. The level of miR-203 expression was significantly upregulated in a TNM stage-dependent manner. High exosomal miR-203 expression in serum was significantly associated with poor DFS and OS (P & lt; 0.01), and was an independent poor prognostic factor. Additionally, high exosomal miR-203 was associated with distant metastasis (P & lt; 0.01). We also found that exosomes carrying miR-203 from CRC cells were incorporated into monocytes and miR-203 promoted the expression of M2 markers such as CD163 and STAT3 in vitro. It suggested that serum exosomal miR-203 released from CRC cells promoted the differentiation of monocytes to M2-tumor-associated macrophages (TAMs) which facilitated premetastatic niche and distant metastasis. Co-injection of miR-203-transfected CRC cells and monocyte increased a ratio of liver metastasis in vivo compared with only control CRC cells or only miR-203-transfected CRC cells injection. On the other hand, overexpression of miR-203 did not increase the proliferation, invasion and migration capacity of CRC cells. This results indicated that serum exosomal miR-203 might create a premetastatic niche whereas did not affect to malignant phenotype of CRC cells. Our study indicated that serum exosomal miR-203 expression could be a novel and feasible biomarker for predicting metastasis, possibly via promoting the differentiation of monocytes to M2-TAMs in CRC. Citation Format: Dai Shimizu, Takaaki Masuda, Yuki Takano, Hisae Imamura, Rui Yamaguchi, Kuniaki Sato, Taro Tobo, Hidenari Hirata, Yosuke Kuroda, Sho Nambara, Naoki Hayashi, Tomohiro Iguchi, Shuhei Ito, Hidetoshi Eguchi, Takahiro Ochiya, Katsuhiko Yanaga, Satoru Miyano, Koshi Mimori. Circulating exosomal miR-203 is associated with metastasis via inducing tumor-associated macrophages in colorectal cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2018; 2018 Apr 14-18; Chicago, IL. Philadelphia (PA): AACR; Cancer Res 2018;78(13 Suppl):Abstract nr 502.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
    RVK:
    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2018
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  • 8
    In: Nature Communications, Springer Science and Business Media LLC, Vol. 9, No. 1 ( 2018-07-23)
    Abstract: Advanced colorectal cancer harbors extensive intratumor heterogeneity shaped by neutral evolution; however, intratumor heterogeneity in colorectal precancerous lesions has been poorly studied. We perform multiregion whole-exome sequencing on ten early colorectal tumors, which contained adenoma and carcinoma in situ. By comparing with sequencing data from advanced colorectal tumors, we show that the early tumors accumulate a higher proportion of subclonal driver mutations than the advanced tumors, which is highlighted by subclonal mutations in KRAS and APC . We also demonstrate that variant allele frequencies of subclonal mutations tend to be higher in early tumors, suggesting that the subclonal mutations are subject to selective sweep in early tumorigenesis while neutral evolution is dominant in advanced ones. This study establishes that the evolutionary principle underlying intratumor heterogeneity shifts from Darwinian to neutral evolution during colorectal tumor progression.
    Type of Medium: Online Resource
    ISSN: 2041-1723
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
    detail.hit.zdb_id: 2553671-0
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  • 9
    In: Annals of Surgical Oncology, Springer Science and Business Media LLC, Vol. 27, No. 10 ( 2020-10), p. 4035-4043
    Type of Medium: Online Resource
    ISSN: 1068-9265 , 1534-4681
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
    detail.hit.zdb_id: 2074021-9
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  • 10
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 76, No. 14_Supplement ( 2016-07-15), p. 4927-4927
    Abstract: Background Colorectal cancer(CRC) is one of the most common types of cancer worldwide. Its high mortality rate is serious problems. Hence it is urgently necessary to identify novel molecular target to improve it. Gain of chromosome 7 is frequently found in CRC, and it has been considered to harbour driver genes that promote tumorigenesis or tumor progression by the gain of function. The aim of this study is to identify novel candidate driver genes on chromosome 7 and to clarify the clinical significance of their expression in CRC. Material and Methods 1. We have selected the candidate genes which satisfied the following criteria using CRC data from The Cancer Genome Atlas (TCGA), 1) their DNA copy number and the mRNA expression is positively correlated with each other, 2) overexpressed in tumor tissues compared to normal tissues. 2. We measured the mRNA expression of the candidate genes in 125 surgically-resected primary CRC tissues and the paired normal colon tissues in our hospital by quantitative RT-PCR. Difference of mRNA expression between CRC tissues and normal colon tissues was analyzed by Mann Whitney U-test. 3. Survival analysis between high and low expression group of the candidate genes was performed by Kaplan-Meier method. Correlation between the mRNA expression of the candidate genes and clinicopathological factors were analyzed by Fisher's exact test. 4. We performed Gene Set Enrichment Analysis (GSEA) in CRC data from TCGA to elucidate the correlation between the candidate genes and gene sets that are associated with tumorigenesis or tumor progression. Results We focused on phosphoserine phosphatase(PSPH), the rate-limiting enzyme in serine biosynthesis pathway(SSP), as a novel candidate driver gene on chromosome 7 in CRC. PSPH expression was significantly higher in CRC tissues than in normal colon tissues (p & lt;0.005). PSPH expression positively correlated with depth of invasion (p & lt;0.05), venous invasion (p & lt;0.05), and distant metastasis (p & lt;0.05). The high PSPH expression group had a significantly poorer prognosis than the low expression group (p & lt;0.001). On multivariate analysis, high PSPH expression was an independent prognostic factor affecting 5-years OS (p & lt;0.005) with hazard ratios (95% CI) of 4.85(1.77-16.2) among conventional clinicopathological factors. The high PSPH expression group in TCGA data set also had poorer prognosis than the low expression group (p & lt;0.05). GSEA showed that PSPH expression was positively correlated with expression of gene set of c-Myc-downstream. Conclusions We identified PSPH as a promising candidate driver gene on chromosome 7. Moreover, PSPH expression was a prognostic factor in CRC. It has been reported that c-Myc upregulates expression of SSP enzymes including PSPH. Therefore, PSPH is suggested to be involved in tumorigenesis or tumor progression as a downstream molecule of c-Myc in CRC. PSPH should be an important gene on chromosome 7 to promote the progression of CRC. Citation Format: Kuniaki Sato, Qingjiang Hu, Shinya Kidogami, Yushi Ogawa, Tomoko Saito, Sho Nambara, Hisateru Komatsu, Hidenari Hirata, Shotaro Sakimura, Ryutaro Uchi, Naoki Hayashi, Tomohiro Iguchi, Hidetoshi Eguchi, Shuhei Ito, Takaaki Masuda, Takashi Nakagawa, Koshi Mimori. Identification of novel candidate of driver genes on chromosome 7 in colorectal cancer. [abstract]. In: Proceedings of the 107th Annual Meeting of the American Association for Cancer Research; 2016 Apr 16-20; New Orleans, LA. Philadelphia (PA): AACR; Cancer Res 2016;76(14 Suppl):Abstract nr 4927.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
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