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  • 1
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    Loktanella koreensis sp. nov., isolated from sea sand in Korea
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 9 ( 2006-09-01), p. 2199-2202
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 9 ( 2006-09-01), p. 2199-2202
    Abstract: A bacterial strain, GA2-M3 T , isolated from a sea-sand sample in Korea, was subjected to polyphasic taxonomic characterization. Cells of strain GA2-M3 T were Gram-negative, non-motile, non-spore-forming and short rod- to ovoid-shaped. Comparative 16S rRNA gene sequencing studies confirmed that the bacterium fell within the radiation of the genus Loktanella . Similarity levels between the 16S rRNA gene sequence of strain GA2-M3 T and those of type strains of Loktanella species with validly published names were 93.5–96.1 %; highest sequence similarity was with Loktanella rosea . The G+C content of the genomic DNA of strain GA2-M3 T was 60.0 mol% and the predominant ubiquinone was Q-10. Major fatty acids were 18 : 1 ω 7 c , 18 : 0 and 18 : 1 ω 7 c 11-methyl. On the basis of the evidence presented, it is proposed that strain GA2-M3 T represents a novel species, for which the name Loktanella koreensis sp. nov. is proposed. The type strain is GA2-M3 T (=KACC 11519 T =DSM 17925 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64276-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 2
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    Pseudoxanthomonas yeongjuensis sp. nov., isolated from soil cultivated with Korean ginseng
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 3 ( 2007-03-01), p. 646-649
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 3 ( 2007-03-01), p. 646-649
    Abstract: A Gram-negative, strictly aerobic, non-spore-forming bacterium, motile by means of single polar flagellum and rod-shaped, designated strain GR12-1 T , was isolated from soil of a ginseng field in Yeongju region, Korea. Phylogenetic analysis based on 16S rRNA gene sequences indicated that this strain is related to members of the genus Pseudoxanthomonas , showing sequence similarity values ranged from 92.3 to 96.2 %. This organism grew at 5–33 °C, with optimum growth at 28 °C. Strain GR12-1 T grew optimally in the presence of 0–2 % NaCl. The whole-cell fatty acid profile included iso-C 15 : 0 , iso-C 17 : 1 ω 9 c , iso-C 16 : 0 , iso-C 11 : 0 3-OH and iso-C 17 : 0 as major components. The only isoprenoid quinone was ubiquinone 8 (Q-8). The DNA G+C content was 63.4 mol%. On the basis of phenotypic, genetic and phylogenetic data, strain GR12-1 T should be classified as a member of a novel species of the genus Pseudoxanthomonas , for which the name Pseudoxanthomonas yeongjuensis sp. nov. is proposed, with strain GR12-1 T (=KACC 11580 T =DSM 18204 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64427-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
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    Lysobacter niabensis sp. nov. and Lysobacter niastensis sp. nov., isolated from greenhouse soils in Korea
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 3 ( 2007-03-01), p. 548-551
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 3 ( 2007-03-01), p. 548-551
    Abstract: Two bacterial strains, designated GH34-4 T and GH41-7 T , were isolated from greenhouse soil cultivated with cucumber. The bacteria were strictly aerobic, Gram-negative, rod-shaped and oxidase- and catalase-positive. 16S rRNA gene sequence analysis indicated that these strains belong to the genus Lysobacter within the Gammaproteobacteria . Strain GH34-4 T showed highest sequence similarity to Lysobacter yangpyeongensis GH19-3 T (97.5 %) and Lysobacter koreensis Dae16 T (96.4 %), and strain GH41-7 T showed highest sequence similarity to Lysobacter antibioticus DSM 2044 T (97.5 %), Lysobacter enzymogenes DSM 2043 T (97.5 %) and Lysobacter gummosus ATCC 29489 T (97.4 %). Levels of DNA–DNA relatedness indicated that strains GH34-4 T and GH41-7 T represented species clearly different from L. yangpyeongensis , L. antibioticus , L. enzymogenes and L. gummosus . The major cellular fatty acids of strains GH34-4 T and GH41-7 T were iso-C 16 : 0 , iso-C 15 : 0 and iso-C 17 : 1 ω 9 c , and the major isoprenoid quinone was Q-8. The DNA G+C contents of GH34-4 T and GH41-7 T were 62.5 and 66.6 mol%, respectively. On the basis of the polyphasic taxonomic data presented, it is evident that each of these strains represents a novel species of the genus Lysobacter , for which the names Lysobacter niabensis sp. nov. (type strain GH34-4 T =KACC 11587 T =DSM 18244 T ) and Lysobacter niastensis sp. nov. (type strain GH41-7 T =KACC 11588 T =DSM 18481 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64473-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 4
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    Bacillus niabensis sp. nov., isolated from cotton-waste composts for mushroom cultivation
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 8 ( 2007-08-01), p. 1909-1913
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 8 ( 2007-08-01), p. 1909-1913
    Abstract: A group of five bacilli, designated strains 4T12, 4T19 T , 5M45, 5M53 and 5T52, isolated from cotton-waste composts for mushroom cultivation, were examined. These strains were Gram-positive, aerobic, motile, spore-forming rods. 16S rRNA gene sequence analyses revealed that the isolates belonged to the genus Bacillus , showing the highest levels of similarity (approx. 96.6–96.9 %) with respect to Bacillus herbersteinensis DSM 16534 T . The values for DNA–DNA hybridization (approx. 85–96 %) among these five strains revealed that they belong to the same species. The major menaquinone present was MK-7 and the predominant cellular fatty acids were anteiso-C 15 : 0 (approx. 24.5–33.9 %) and C 16 : 0 (approx. 15.1–34.1 %). The DNA G+C contents were 37.7–40.9 mol%. On the basis of physiological, biochemical, chemotaxonomic and comparative genomic analyses, the five isolates represent a novel species of the genus Bacillus , for which the name Bacillus niabensis sp. nov. is proposed. The type strain is 4T19 T (=KACC 11279 T =DSM 17723 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64178-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
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    Pseudoxanthomonas suwonensis sp. nov., isolated from cotton waste composts
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 3 ( 2006-03-01), p. 659-662
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 3 ( 2006-03-01), p. 659-662
    Abstract: Three strains, 4M1 T , 4M9 and 4M12, were isolated from cotton waste composts. These strains are Gram-negative, aerobic and non-spore-forming rods. 16S rRNA gene sequence comparisons demonstrated that these isolates were clustered phylogenetically within the genus Pseudoxanthomonas and 4M1 T revealed sequence similarity levels of 96·9–99·0 % to six Pseudoxanthomonas species with validly published names. According to DNA–DNA hybridization, relatedness values between 4M1 T and six known Pseudoxanthomonas species were in the range of 52–63 %. The DNA G+C content of the strains was 66·6–68·4 mol%. For a more detailed characterization of these strains, the physiological, chemotaxonomic and genotypic properties were evaluated. From the results of this study, the name Pseudoxanthomonas suwonensis sp. nov. is proposed, with the type strain 4M1 T (=KACC 11320 T =DSM 17175 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.63749-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
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    Marinobacter koreensis sp. nov., isolated from sea sand in Korea
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 11 ( 2006-11-01), p. 2653-2656
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 11 ( 2006-11-01), p. 2653-2656
    Abstract: A marine, Gram-negative, aerobic, motile, straight-rod-shaped, moderately halophilic bacterium, designated strain DD-M3 T , was isolated from sea sand in Pohang, Korea. A phylogenetic tree based on 16S rRNA gene sequences showed that the strain fell within the evolutionary radiation encompassed by the genus Marinobacter . The levels of 16S rRNA gene sequence similarity between the novel strain and the type strains of recognized Marinobacter species ranged from 94.2 to 97.6 %, the highest values being with Marinobacter flavimaris SW-145 T (97.6 %) and Marinobacter lipolyticus SM19 T (96.8 %). The values for DNA–DNA relatedness between isolate DD-M3 T and the type strains of the most closely related species, M. flavimaris and M. lipolyticus , were 41 and 36 %, respectively. Strain DD-M3 T was characterized as having Q-9 as the predominant respiratory quinone and 16 : 0, summed feature 3 and 18 : 1 ω 9 c as the main fatty acids. The DNA G+C content was 54.1 mol%. On the basis of its phenotypic and genotypic characteristics, DD-M3 T represents a novel species of the genus Marinobacter , for which the name Marinobacter koreensis sp. nov. is proposed, with DD-M3 T (=KACC 11513 T =DSM 17924 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64231-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
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    Ureibacillus suwonensis sp. nov., isolated from cotton waste composts
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 3 ( 2006-03-01), p. 663-666
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 3 ( 2006-03-01), p. 663-666
    Abstract: The taxonomic position of two spore-forming strains 6T19 T and 6T29, isolated from cotton composts for the cultivation of oyster mushroom ( Pleurotus ostreatus ), was investigated by a polyphasic approach. Cells of strains 6T19 T and 6T29 were rod-shaped, Gram-negative and strictly aerobic. Sequencing and comparative analyses for the 16S rRNA genes of these strains clearly showed their phylogenetic affiliation to the genus Ureibacillus . Their closest relatives Ureibacillus thermosphaericus and Ureibacillus terrenus have sequence similarity of 96·9 and 97·5 %, respectively. The isoprenoid quinones of isolate 6T19 T were MK-9, MK-8, MK-7, MK-10 and MK-6 (45 : 27 : 18 : 5 : 4 %), the peptidoglycan type was l -lys← d -Asp and the main cellular fatty acid was i-C 16 : 0 . DNA–DNA hybridization experiments resulted in relatedness values of 37 % between 6T19 T and U. thermosphaericus DSM 10633 T and 41 % between 6T19 T and U. terrenus DSM 12654 T . Based on the polyphasic data, strains 6T19 T and 6T29 can be described as members of a novel species of the genus Ureibacillu s, for which the name Ureibacillus suwonenesis sp. nov. is proposed. The type strain is 6T19 T (=KACC 11287 T =DSM 16752 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.63703-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
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    Devosia soli sp. nov., isolated from greenhouse soil in Korea
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 11 ( 2006-11-01), p. 2689-2692
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 11 ( 2006-11-01), p. 2689-2692
    Abstract: A Gram-negative, obligately aerobic, rod-shaped bacterium was isolated from greenhouse soil used to cultivate lettuce. The strain, GH2-10 T , was characterized on the basis of phenotypic and genotypic data. 16S rRNA gene sequence analysis revealed that the isolate belonged to the genus Devosia , with highest sequence similarity (98.5 %) to Devosia riboflavina IFO 13584 T . Sequence similarities with other strains tested were below 97.0 %. Strain GH2-10 T had Q-10 as the predominant ubiquinone and C 18 : 1 ω 7 c and C 16 : 0 as the major fatty acids. The G+C content of the genomic DNA was 59.5 mol%. The results of DNA–DNA hybridization experiments (47 % relatedness between D. riboflavina DSM 7230 T and strain GH2-10 T ) and physiological and biochemical tests suggested that strain GH2-10 T represents a novel species of the genus Devosia , for which the name Devosia soli sp. nov. is proposed. The type strain is GH2-10 T (=KACC 11509 T =DSM 17780 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64214-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 9
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    Deinococcus cellulosilyticus sp. nov., isolated from air
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 8 ( 2007-08-01), p. 1685-1688
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 8 ( 2007-08-01), p. 1685-1688
    Abstract: A pink-coloured bacterial strain, 5516J-15 T , was isolated from an air sample from Jeju Island, Republic of Korea. The organism was found to have resistance to UV radiation typical of members of the genus Deinococcus , and it was placed within the radiation of the Deinococcus on a phylogenetic tree based on 16S rRNA gene sequences. Strain 5516J-15 T shared low 16S rRNA gene sequence similarity (84.5–87.8 %) with Deinococcus species, showing highest sequence similarity to Deinococcus deserti VCD115 T (87.8 %) and Deinococcus indicus Wt/1a T (87.8 %). Strain 5516J-15 T had type A3 β peptidoglycan with l -ornithine, menaquinone 8 (MK-8) as the major quinone and iso-C 12 : 0 , anteiso-C 13 : 0 , iso-C 16 : 0 and C 16 : 0 as the major fatty acids. Its polar lipid profile contained three unknown aminophospholipids, two unknown polar lipids, one unknown phospholipid and one unknown glycolipid. The DNA G+C content of strain 5516J-15 T was 61.3 mol%. Based on the phylogenetic and phenotypic data presented, it is proposed that the unknown strain should be classified within a novel species in the genus Deinococcus with the name Deinococcus cellulosilyticus sp. nov. The type strain is 5516J-15 T (=KACC 11606 T =DSM 18568 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64951-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 10
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    Niastella koreensis gen. nov., sp. nov. and Niastella yeongjuensis sp. nov., novel members of the phylum Bacteroidetes, isolated from soil cultivated with Korean ginseng
    Microbiology Society ; 2006
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 56, No. 8 ( 2006-08-01), p. 1777-1782
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 56, No. 8 ( 2006-08-01), p. 1777-1782
    Abstract: Two novel strains, GR20-10 T and GR20-13 T , were isolated from soil using R2A medium. The soil sample was collected from a field in the Yeongju region of Korea that was cultivated with Korean ginseng. Phylogenetic analysis based on 16S rRNA gene sequences indicated that these strains formed a cluster with several uncultured bacterial clones and with Flexibacter filiformis , Flexibacter sancti , Flexibacter japonensis , Cytophaga arvensicola and Flavobacterium ferrugineum (recently reclassified as Terrimonas ferruginea ) in the phylum Bacteroidetes . The level of 16S rRNA gene sequence similarity between the two novel strains was 98.9 %. Isolates GR20-10 T and GR20-13 T showed the highest sequence similarities to Flexibacter japonensis IFO 16041 T (91.8 and 91.9 %, respectively) and T. ferruginea ATCC 13524 T (90.4 and 90.6 %, respectively). The whole-cell fatty acid profiles of the two isolates were similar and their major fatty acids were 15 : 0 iso, 17 : 0 iso 3-OH and 15 : 1 iso G. The major isoprenoid quinone of both strains was MK-7. The G+C contents of GR20-10 T and GR20-13 T were 45.8 and 44.3 mol%, respectively. DNA–DNA hybridization (57 % DNA–DNA hybridization value) and phenotypic data indicated that strains GR20-10 T and GR20-13 T each belong to a separate species. On the basis of phenotypic and phylogenetic data and genomic distinctiveness, strains GR20-10 T and GR20-13 T represent two novel species in a novel genus in the phylum Bacteroidetes ; the names Niastella koreensis gen. nov., sp. nov. (the type species; type strain GR20-10 T =KACC 11465 T =DSM 17620 T ) and Niastella yeongjuensis sp. nov. (type strain GR20-13 T =KACC 11466 T =DSM 17621 T ) are proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64242-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2006
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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