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  • Kashyap, Hemant K.  (8)
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  • 1
    Online Resource
    Online Resource
    American Chemical Society (ACS) ; 2015
    In:  The Journal of Physical Chemistry C Vol. 119, No. 42 ( 2015-10-22), p. 23955-23967
    In: The Journal of Physical Chemistry C, American Chemical Society (ACS), Vol. 119, No. 42 ( 2015-10-22), p. 23955-23967
    Type of Medium: Online Resource
    ISSN: 1932-7447 , 1932-7455
    RVK:
    Language: English
    Publisher: American Chemical Society (ACS)
    Publication Date: 2015
    detail.hit.zdb_id: 2256522-X
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  • 2
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 148, No. 16 ( 2018-04-28)
    Abstract: Modulation of lipid membrane properties due to the permeation of amphiphiles is an important biological process pertaining to many applications in the field of pharmaceutics, toxicology, and biotechnology. Sphingolipids are both structural and functional lipids that constitute an important component of mechanically stable and chemically resistant outer leaflets of plasma membranes. Here, we present an atomistic molecular dynamics simulation study to appreciate the concentration-dependent effects of small amphiphilic molecules, such as ethanol, acetone, and dimethyl sulfoxide (DMSO), on the structure and stability of a fully hydrated homogeneous N-palmitoyl-sphingomyelin (PSM) bilayer. The study reveals an increase in the lateral expansion of the bilayer along with disordering of the hydrophobic lipid tails on increasing the concentration of ethanol. At higher concentrations of ethanol, rupturing of the bilayer is quite evident through the analysis of partial electron density profiles and lipid tail order parameters. For ethanol containing systems, permeation of water molecules in the hydrophobic part of the bilayer is allowed through local defects made due to the entry of ethanol molecules via ethanol–ethanol and ethanol–PSM hydrogen bonds. Moreover, the extent of PSM–PSM hydrogen bonding decreases with increasing ethanol concentration. On the other hand, acetone and DMSO exhibit minimal effects on the stability of the PSM bilayer at their lower concentrations, but at higher concentrations they tend to enhance the stability of the bilayer. The simulated potential of mean force (PMF) profiles for the translocation of the three solutes studied reveal that the free-energy of transfer of an ethanol molecule across the PSM lipid head region is lower than that for acetone and DMSO molecules. However, highest free-energy rise in the core hydrophobic part of the bilayer is observed for the DMSO molecule, whereas the ethanol and acetone PMF profiles show a lower barrier in the hydrophobic region of the bilayer.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2018
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
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  • 3
    Online Resource
    Online Resource
    American Chemical Society (ACS) ; 2016
    In:  The Journal of Physical Chemistry B Vol. 120, No. 12 ( 2016-03-31), p. 3206-3214
    In: The Journal of Physical Chemistry B, American Chemical Society (ACS), Vol. 120, No. 12 ( 2016-03-31), p. 3206-3214
    Type of Medium: Online Resource
    ISSN: 1520-6106 , 1520-5207
    RVK:
    Language: English
    Publisher: American Chemical Society (ACS)
    Publication Date: 2016
    detail.hit.zdb_id: 1357799-2
    detail.hit.zdb_id: 2006039-7
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  • 4
    Online Resource
    Online Resource
    AIP Publishing ; 2016
    In:  The Journal of Chemical Physics Vol. 145, No. 13 ( 2016-10-07)
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 145, No. 13 ( 2016-10-07)
    Abstract: In the present molecular dynamics study, we investigate the effects of increasing pressure on the structural morphology of trihexyl(tetradecyl)phosphonium bromide (P666,14+/Br−) and trihexyl(tetradecyl)phosphonium dicyanamide (P666,14+/DCA−) ionic liquids (ILs). Special attention was paid to how charge and polarity orderings, which are present in the microscopic structure of these ILs at ambient conditions, respond to very high external pressure. The simulated X-ray scattering structure functions, S(q)s, of the two systems reveal that both the characteristic orderings show appreciable responsiveness towards the applied pressure change. At a given pressure, a slight difference between the polarity ordering (PO), charge ordering (CO), and adjacency correlations (AC) for both the systems points towards different microscopic structure of the two ILs due to change in anion. Beyond a certain pressure, we observe emergence of a new low-q peak in the S(q)s of both the systems. The new peak is associated with formation of crystalline order in these systems at higher pressures and the real space length-scale corresponding to the crystalline order lies in between those of polarity- and charge-ordering. Beyond the transition pressure, the crystallinity of both the systems increases with increasing pressure and the corresponding length-scale shifts towards smaller values upon increasing pressure. We also observe that the extent of the usual polarity ordering decreases upon increasing pressure for both the P666,14+/Br− and P666,14+/DCA− systems. We demonstrate that the disappearance of the usual polarity peak is due to decreased polar–polar and apolar–apolar correlations and enhanced correlations between the charged and uncharged groups of the ions. This scenario is completely reversed for the components corresponding to the crystalline order, the polar–polar and apolar–apolar correlations are enhanced and polar–apolar correlations are diminished at higher pressure. In addition, the charge ordering peak, which is not so obvious from the total S(q) but from ionic and sub-ionic partial components of it, shifts towards lower q values for P666,14+/Br−. Instead, for the P666,14+/DCA−, at the highest pressure studied the CO peak occurs at a q-value higher than that at the ambient pressure.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2016
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
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  • 5
    Online Resource
    Online Resource
    American Chemical Society (ACS) ; 2017
    In:  The Journal of Physical Chemistry C Vol. 121, No. 24 ( 2017-06-22), p. 13202-13210
    In: The Journal of Physical Chemistry C, American Chemical Society (ACS), Vol. 121, No. 24 ( 2017-06-22), p. 13202-13210
    Type of Medium: Online Resource
    ISSN: 1932-7447 , 1932-7455
    RVK:
    Language: English
    Publisher: American Chemical Society (ACS)
    Publication Date: 2017
    detail.hit.zdb_id: 2256522-X
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  • 6
    Online Resource
    Online Resource
    Elsevier BV ; 2019
    In:  Journal of Molecular Liquids Vol. 291 ( 2019-10), p. 111269-
    In: Journal of Molecular Liquids, Elsevier BV, Vol. 291 ( 2019-10), p. 111269-
    Type of Medium: Online Resource
    ISSN: 0167-7322
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2019
    detail.hit.zdb_id: 1491496-7
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  • 7
    Online Resource
    Online Resource
    AIP Publishing ; 2015
    In:  The Journal of Chemical Physics Vol. 142, No. 13 ( 2015-04-07)
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 142, No. 13 ( 2015-04-07)
    Abstract: This article reports results from the molecular dynamics simulations on the structural arrangement of the ions and molecules in the mixtures of trihexyl(tetradecyl)phosphonium chloride ([P666,14+][Cl−] ) ionic liquid (IL) and methanol (MeOH) over the entire composition range. Effects of composition on the charge and polarity orderings have been investigated via computation of X-ray scattering structure function, S(q), and by using a partitioning scheme proposed for such multi-component mixtures. Except for the neat methanol liquid, the total S(q) shows two peaks in its intermolecular region for all the mole-fractions. The lowest q peak is dominated primarily by anion-anion, cation-anion, and methanol-anion correlations. Our results signify that the methanol bulk structure, which predominantly has short-distance characteristic correlations and is governed by polar group of methanol, is retained for xIL ≤ 0.1. Then, the mixture goes through gradual structural changes from methanol-like to the IL-like for 0.1 & lt; xIL ≤ 0.7. The dipolar interaction between methanol molecules weakens in this range, and the structural landscape of the mixture is steered by strong ion-ion, anion-methanol, and nonpolar interactions. The IL-like structural arrangement is virtually recovered for xIL & gt; 0.7. At all the compositions studied, while the cation head groups are predominantly solvated by anions and subsequently by methanol molecules, the polar hydroxyl group of methanol is preferentially solvated by the anions. The radial distribution functions of selected pair of atomic species have also confirmed these observations.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2015
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
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  • 8
    Online Resource
    Online Resource
    AIP Publishing ; 2017
    In:  The Journal of Chemical Physics Vol. 147, No. 19 ( 2017-11-21)
    In: The Journal of Chemical Physics, AIP Publishing, Vol. 147, No. 19 ( 2017-11-21)
    Abstract: We apply all-atom molecular dynamics simulations to describe the bulk morphology and interfacial structure of reline, a deep eutectic solvent comprising choline chloride and urea in 1:2 molar ratio, near neutral and charged graphene electrodes. For the bulk phase structural investigation, we analyze the simulated real-space radial distribution functions, X-ray/neutron scattering structure functions, and their partial components. Our study shows that both hydrogen-bonding and long-range correlations between different constituents of reline play a crucial role to lay out the bulk structure of reline. Further, we examine the variation of number density profiles, orientational order parameters, and electrostatic potentials near the neutral and charged graphene electrodes with varying electrode charge density. The present study reveals the presence of profound structural layering of not only the ionic components of reline but also urea near the electrodes. In addition, depending on the electrode charge density, the choline ions and urea molecules render different orientations near the electrodes. The simulated number density and electrostatic potential profiles for reline clearly show the presence of multilayer structures up to a distance of 1.2 nm from the respective electrodes. The observation of positive values of the surface potential at zero charge indicates the presence of significant nonelectrostatic attraction between the choline cation and graphene electrode. The computed differential capacitance (Cd) for reline exhibits an asymmetric bell-shaped curve, signifying different variation of Cd with positive and negative surface potentials.
    Type of Medium: Online Resource
    ISSN: 0021-9606 , 1089-7690
    Language: English
    Publisher: AIP Publishing
    Publication Date: 2017
    detail.hit.zdb_id: 3113-6
    detail.hit.zdb_id: 1473050-9
    Location Call Number Limitation Availability
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