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  • Wiley  (22)
  • Jiang, Fan  (22)
  • 1
    In: Molecular Ecology Resources, Wiley, Vol. 22, No. 8 ( 2022-11), p. 3124-3140
    Abstract: Inulin is an important reserve polysaccharide in Asteraceae plants, and is also widely used as a sweetener, a source of dietary fibre and prebiotic. Nevertheless, a lack of genomic resources for inulin‐producing plants has hindered extensive studies on inulin metabolism and regulation. Here, we present chromosome‐level reference genomes for four inulin‐producing plants: chicory ( Cichorium intybus ), endive ( Cichorium endivia ), great burdock ( Arctium lappa ) and yacon ( Smallanthus sonchifolius ), with assembled genome sizes of 1.28, 0.89, 1.73 and 2.72 Gb, respectively. We found that the chicory, endive and great burdock genomes were shaped by whole genome triplication (WGT‐1), and the yacon genome was shaped by WGT‐1 and two subsequent whole genome duplications (WGD‐2 and WGD‐3). A yacon unique whole genome duplication (WGD‐3) occurred 5.6–5.8 million years ago. Our results also showed the genome size difference between chicory and endive is largely due to LTR retrotransposons, and rejected a previous hypothesis that chicory is an ancestor of endive. Furthermore, we identified fructan‐active‐enzyme and transcription‐factor genes, and found there is one copy in chicory, endive and great burdock but two copies in yacon for most of these genes, except for the 1‐FEH II gene which is significantly expanded in chicory. Interestingly, inulin synthesis genes 1‐SST and 1‐FFT are located close to each other, as are the degradation genes 1‐FEH I and 1‐FEH II . Finally, we predicted protein structures for 1‐FFT genes to explore the mechanism determining inulin chain length.
    Type of Medium: Online Resource
    ISSN: 1755-098X , 1755-0998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2406833-0
    SSG: 12
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  • 2
    In: Molecular Ecology Resources, Wiley, Vol. 23, No. 6 ( 2023-08), p. 1423-1441
    Abstract: Mythimna separata and Mythimna loreyi are global pests of gramineous cereals, heavily controlled with synthetic insecticides. Here, we generated two high‐quality chromosome‐level genome assemblies for M. separata (688 Mb) and M. loreyi (683 Mb). Our analysis identified Z and W chromosomes, with few genes and abundant transposable elements (TEs) found on the W chromosome. We also observed a recent explosion of long interspersed nuclear elements (LINEs), which contributed to the larger genomes of Mythimna . The two armyworms diverged ~10.5 MYA, with only three chromosomes have intrachromosomal rearrangements. Additionally, we observed a tandem repeat expansion of α‐amylase genes in Mythimna , which may promote the digestion of carbohydrates and exacerbate their damage to crops. Furthermore, we inferred the sex pheromone biosynthesis pathway for M. separata , M. loreyi and Spodoptera frugiperda . We discovered that M. loreyi and S. frugiperda synthesized the same major constituents of sex pheromones through different pathways. Specifically, the double bonds in the dominant sex pheromone components of S. frugiperda were generated by Δ9‐ and Δ11‐desaturase, while they were generated by Δ11‐desaturase and chain‐shortening reactions in M. loreyi . We also identified pheromone receptor (PR) genes and inferred their corresponding components. These findings provide a better understanding of sex pheromone communication and promote the development of a new pest control strategy involving pheromone traps, which are more effective and environmentally friendly than current strategies.
    Type of Medium: Online Resource
    ISSN: 1755-098X , 1755-0998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 2406833-0
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Wiley ; 2020
    In:  Congenital Anomalies Vol. 60, No. 5 ( 2020-09), p. 156-157
    In: Congenital Anomalies, Wiley, Vol. 60, No. 5 ( 2020-09), p. 156-157
    Type of Medium: Online Resource
    ISSN: 0914-3505 , 1741-4520
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2139944-X
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  • 4
    In: Annals of Human Genetics, Wiley
    Abstract: To evaluate the value of the real‐time PCR–based multicolor melting curve analysis (MMCA) with an automatic analysis system used in a mass thalassemia screening and prenatal diagnosis program. Methods A total of 18,912 peripheral blood samples from 9456 couples and 1150 prenatal samples were detected by MMCA assay. All prenatal samples were also tested by a conventional method. Samples with unknown melting peaks, unusual peak height ratios between a wild allele and a mutant allele, or a discordant phenotype‐genotype match were further studied by using multiplex ligation–dependent probe amplification (MLPA) or Sanger sequencing. All MMCA results were automatically analyzed and manually checked. The consistency between MMCA assay and conventional methods among prenatal samples was investigated. Results Except for initiation codon (T  〉  G) (HBB:c.2T  〉  G), all genotypes of thalassemia inside the scope of conventional methods were detected by MMCA assay. Additionally, 27 carriers with 10 rare HBB variants, 13 with α fusion gene, 1 with a rare deletion in α globin gene, and 1 with rare HBA variant were detected by using MMCA assay. Conclusion MMCA can be an alternative approach used in routine thalassemia carrier screening and prenatal diagnosis for its high throughput, sufficient stability, low cost, and easy operation.
    Type of Medium: Online Resource
    ISSN: 0003-4800 , 1469-1809
    Language: English
    Publisher: Wiley
    Publication Date: 2023
    detail.hit.zdb_id: 1470206-X
    SSG: 12
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  • 5
    In: Paediatric and Perinatal Epidemiology, Wiley, Vol. 35, No. 2 ( 2021-03), p. 257-268
    Abstract: Sleep disturbances in women occur frequently throughout pregnancy. Previous studies have demonstrated that the increasing incidence of physiological and psychological illness is concurrent with increasing sleep deprivation and poor sleep quality in adults and children. Objectives The Shanghai Sleep Birth Cohort Study (SSBCS) was established to examine the effect of sleep disturbances during the third trimester on emotional regulation of mothers; to assess the effect of maternal sleep during pregnancy on the growth and development of children; and to explore the influence of children's sleep characteristics on physical and social‐emotional development. Population The study was conducted in the Renji Hospital in Pudong New District, Shanghai from May 2012 to July 2013. Women and their newborns who met the inclusion criteria and agreed to participate in this study were recruited to the SSBCS. Methods The follow‐up visits for children were conducted at the age of 42 days, 3, 6, 9, 12, 18, and 24 months, and 3, 4, and 6 years. Data on demographic factors, physical examination, sleep assessment, developmental and psychiatric assessment, diet records, and biological samples were collected throughout the study. Preliminary results A total of 277 pregnant women were recruited to the study; the response rate was 64.3%. 37.9% of the pregnant women had poor sleep quality and 12.0% suffered from depression. Infant sleep patterns changed during the first year of life, but most sleep characteristics showed little variation from 6 to 12 months. Conclusions The SSBCS is an on‐going prospective cohort study with follow‐up to 6 years. The detailed data on demographic factors, sleep assessment, physical examinations, neurodevelopmental and psychiatric assessment, diet records, and biological samples make this research platform an important resource for examining the potential effects of sleep characteristics on both maternal and child health.
    Type of Medium: Online Resource
    ISSN: 0269-5022 , 1365-3016
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2008566-7
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  • 6
    Online Resource
    Online Resource
    Wiley ; 2019
    In:  Alcoholism: Clinical and Experimental Research Vol. 43, No. 11 ( 2019-11), p. 2344-2353
    In: Alcoholism: Clinical and Experimental Research, Wiley, Vol. 43, No. 11 ( 2019-11), p. 2344-2353
    Abstract: (Pro)renin receptor (PRR), a novel member of the renin–angiotensin system, participates in various cardiovascular diseases. However, the role of PRR in alcoholic cardiomyopathy ( ACM ), which is caused by alcohol intake and manifests as myocardial damage and cardiac dysfunction, remains unclear. Methods PRR gene silencing was achieved by transfecting recombinant adenovirus expressing anti‐ PRR short hairpin RNA ( PRR ‐sh RNA ). In vitro, primary rat cardiac fibroblasts ( CF s) were cultured with the stimulation of alcohol (200 mM), with or without PRR ‐sh RNA and PD 98059. Immunofluorescence, RT ‐ PCR , and Western blot were used to measure the protein and messenger ( mRNA ) expression of PRR , fibrotic factors, and members of related signaling pathways. In vivo, Wistar rats were fed a diet containing 9% (v/v) alcohol or a normal diet for 3 months, with or without PRR ‐sh RNA . Sirius Red staining, immunohistochemical staining, and toluidine blue staining were used to evaluate myocardial fibrosis, oxidative stress, and inflammation response. Results Alcohol markedly increased PRR mRNA and protein expression in a time‐ and concentration‐dependent manner in CF s. The increased expression of fibrotic factors induced by alcohol was prevented by PRR ‐sh RNA and PD 98059. Moreover, PRR ‐sh RNA decreased the phosphorylation of extracellular regulated protein kinases (ERK) 1/2 in CF s. Furthermore, PRR ‐sh RNA decreased cardiac fibrosis, reduced oxidative stress, and alleviated inflammation response in the myocardial tissue. Conclusions Our results show that PRR ‐ ERK 1/2 signaling was involved in the development of ACM and that PRR could be a new target for the treatment of ACM.
    Type of Medium: Online Resource
    ISSN: 0145-6008 , 1530-0277
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2046886-6
    detail.hit.zdb_id: 3167872-5
    SSG: 15,3
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  • 7
    Online Resource
    Online Resource
    Wiley ; 2021
    In:  International Journal of Laboratory Hematology Vol. 43, No. 4 ( 2021-08)
    In: International Journal of Laboratory Hematology, Wiley, Vol. 43, No. 4 ( 2021-08)
    Type of Medium: Online Resource
    ISSN: 1751-5521 , 1751-553X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2268600-9
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  • 8
    In: Journal of School Health, Wiley, Vol. 88, No. 2 ( 2018-02), p. 112-121
    Abstract: This was a cross‐sectional survey to investigate the relationship of age, parent education, sleep duration, physical activity, and dietary habits with overweight or obesity in school‐age children in Shanghai. METHODS The survey gathered information from 13,001 children in grades 1 through 5 (age 6 to 10 years) among 26 elementary schools in 7 districts. Activity level was evaluated using the International Children's Leisure Activities Study Survey Questionnaire (CLASS‐C). The definitions of normal, overweight, and obese were adjusted for each age. RESULTS Logistic regression analysis indicated that age, being male, having ≤10 hours of sleep on non‐school days, eating ≥1 vegetable/day, or drinking ≥1 sugar‐sweetened drink/day increased the risk for a child being overweight or obese compared with having 〉 10 hours of sleep or ≤3 vegetables or ≤3 sugar‐sweetened drinks/month (p ≤ .008). Having 〉 2 hours of outdoor activities on non‐school days reduced the risk of being overweight or obese compared with ≤2 hours of outdoor activities on non‐school days (p  〈  .001). CONCLUSIONS We found that age, sex, sleep, and some dietary habits impacted weight, and suggests that specific cultural and economic factors may impact risk of a child being overweight or obese.
    Type of Medium: Online Resource
    ISSN: 0022-4391 , 1746-1561
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2066647-0
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  • 9
    Online Resource
    Online Resource
    Wiley ; 2021
    In:  Congenital Anomalies Vol. 61, No. 4 ( 2021-07), p. 138-139
    In: Congenital Anomalies, Wiley, Vol. 61, No. 4 ( 2021-07), p. 138-139
    Type of Medium: Online Resource
    ISSN: 0914-3505 , 1741-4520
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2139944-X
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  • 10
    Online Resource
    Online Resource
    Wiley ; 2022
    In:  WIREs Computational Molecular Science Vol. 12, No. 3 ( 2022-05)
    In: WIREs Computational Molecular Science, Wiley, Vol. 12, No. 3 ( 2022-05)
    Abstract: Molecular dynamics (MD) simulation is a powerful tool for exploring the conformational energy landscape of proteins, and the reliability of MD results is crucially dependent on the underlying force field (FF). An accurate FF capable of producing balanced distributions of diverse conformations at multiple levels has been a long‐sought goal. Towards this, several decades of joint efforts have been made to address FF deficiencies, manifested by conformational biases at different levels (local conformations, secondary structures, and global extendedness of polypeptide chain). We first present the major FF biases, then review the strategies to address them separately. Specifically, both nonresidue‐specific and residue‐specific strategies for torsional parameter optimization have been applied to achieve local conformation and secondary structure balances. Significant improvements can be gained with residue‐specific torsional parameters especially when explicit dihedral couplings are considered. Further, the additional balance between protein–protein and protein–water interactions has been optimized via multiple ways to reproduce the global extendedness of polypeptide chains, especially for unfolded or disordered proteins. This review aims to summarize the most valuable experience and lessons gained from the past, which, we hope, can facilitate further improvements of both classical FFs and more sophisticated models such as polarizable FFs. This article is categorized under: Molecular and Statistical Mechanics 〉 Molecular Dynamics and Monte‐Carlo Methods Molecular and Statistical Mechanics 〉 Molecular Mechanics
    Type of Medium: Online Resource
    ISSN: 1759-0876 , 1759-0884
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2599565-0
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