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  • 1
    In: Ecological Monographs, Wiley, Vol. 92, No. 3 ( 2022-08)
    Abstract: Interactions among fungi and insects involve hundreds of thousands of species. While insect communities on plants have formed some of the classic model systems in ecology, fungus‐based communities and the forces structuring them remain poorly studied by comparison. We characterize the arthropod communities associated with fruiting bodies of eight mycorrhizal basidiomycete fungus species from three different orders along a 1200‐km latitudinal gradient in northern Europe. We hypothesized that, matching the pattern seen for most insect taxa on plants, we would observe a general decrease in fungal‐associated species with latitude. Against this backdrop, we expected local communities to be structured by host identity and phylogeny, with more closely related fungal species sharing more similar communities of associated organisms. As a more unique dimension added by the ephemeral nature of fungal fruiting bodies, we expected further imprints generated by successional change, with younger fruiting bodies harboring communities different from older ones. Using DNA metabarcoding to identify arthropod communities from fungal fruiting bodies, we found that latitude left a clear imprint on fungus‐associated arthropod community composition, with host phylogeny and decay stage of fruiting bodies leaving lesser but still‐detectable effects. The main latitudinal imprint was on a high arthropod species turnover, with no detectable pattern in overall species richness. Overall, these findings paint a new picture of the drivers of fungus‐associated arthropod communities, suggesting that latitude will not affect how many arthropod species inhabit a fruiting body but, rather, what species will occur in it and at what relative abundances (as measured by sequence read counts). These patterns upset simplistic predictions regarding latitudinal gradients in species richness and in the strength of biotic interactions.
    Type of Medium: Online Resource
    ISSN: 0012-9615 , 1557-7015
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2010129-6
    SSG: 12
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  • 2
    In: Ecology, Wiley, Vol. 101, No. 2 ( 2020-02)
    Abstract: The ongoing global change and the increased interest in macroecological processes call for the analysis of spatially extensive data on species communities to understand and forecast distributional changes of biodiversity. Recently developed joint species distribution models can deal with numerous species efficiently, while explicitly accounting for spatial structure in the data. However, their applicability is generally limited to relatively small spatial data sets because of their severe computational scaling as the number of spatial locations increases. In this work, we propose a practical alleviation of this scalability constraint for joint species modeling by exploiting two spatial‐statistics techniques that facilitate the analysis of large spatial data sets: Gaussian predictive process and nearest‐neighbor Gaussian process. We devised an efficient Gibbs posterior sampling algorithm for Bayesian model fitting that allows us to analyze community data sets consisting of hundreds of species sampled from up to hundreds of thousands of spatial units. The performance of these methods is demonstrated using an extensive plant data set of 30,955 spatial units as a case study. We provide an implementation of the presented methods as an extension to the hierarchical modeling of species communities framework.
    Type of Medium: Online Resource
    ISSN: 0012-9658 , 1939-9170
    URL: Issue
    RVK:
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 1797-8
    detail.hit.zdb_id: 2010140-5
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2021
    In:  Scientific Reports Vol. 11, No. 1 ( 2021-07-16)
    In: Scientific Reports, Springer Science and Business Media LLC, Vol. 11, No. 1 ( 2021-07-16)
    Abstract: The general negative impact of forestry on wood-inhabiting fungal diversity is well recognized, yet the effect of forest naturalness is poorly disentangled among different fungal groups inhabiting dead wood of different tree species. We studied the relationship between forest naturalness, log characteristics and diversity of different fungal morpho-groups inhabiting large decaying logs of similar quality in spruce dominated boreal forests. We sampled all non-lichenized fruitbodies from birch, spruce, pine and aspen in 12 semi-natural forest sites of varying level of naturalness. The overall fungal community composition was mostly determined by host tree species. However, when assessing the relevance of the environmental variables separately for each tree species, the most important variable varied, naturalness being the most important explanatory variable for fungi inhabiting pine and aspen. More strikingly, the overall species richness increased as the forest naturalness increased, both at the site and log levels. At the site scale, the pattern was mostly driven by the discoid and pyrenoid morpho-groups inhabiting pine , whereas at the log scale, it was driven by pileate and resupinate morpho-groups inhabiting spruce. Although our study demonstrates that formerly managed protected forests serve as effective conservation areas for most wood-inhabiting fungal groups, it also shows that conservation planning and management should account for group- or host tree -specific responses.
    Type of Medium: Online Resource
    ISSN: 2045-2322
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
    detail.hit.zdb_id: 2615211-3
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  • 4
    In: Ecological Monographs, Wiley, Vol. 89, No. 3 ( 2019-08)
    Abstract: A large array of species distribution model ( SDM ) approaches has been developed for explaining and predicting the occurrences of individual species or species assemblages. Given the wealth of existing models, it is unclear which models perform best for interpolation or extrapolation of existing data sets, particularly when one is concerned with species assemblages. We compared the predictive performance of 33 variants of 15 widely applied and recently emerged SDM s in the context of multispecies data, including both joint SDM s that model multiple species together, and stacked SDM s that model each species individually combining the predictions afterward. We offer a comprehensive evaluation of these SDM approaches by examining their performance in predicting withheld empirical validation data of different sizes representing five different taxonomic groups, and for prediction tasks related to both interpolation and extrapolation. We measure predictive performance by 12 measures of accuracy, discrimination power, calibration, and precision of predictions, for the biological levels of species occurrence, species richness, and community composition. Our results show large variation among the models in their predictive performance, especially for communities comprising many species that are rare. The results do not reveal any major trade‐offs among measures of model performance; the same models performed generally well in terms of accuracy, discrimination, and calibration, and for the biological levels of individual species, species richness, and community composition. In contrast, the models that gave the most precise predictions were not well calibrated, suggesting that poorly performing models can make overconfident predictions. However, none of the models performed well for all prediction tasks. As a general strategy, we therefore propose that researchers fit a small set of models showing complementary performance, and then apply a cross‐validation procedure involving separate data to establish which of these models performs best for the goal of the study.
    Type of Medium: Online Resource
    ISSN: 0012-9615 , 1557-7015
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2010129-6
    SSG: 12
    SSG: 14
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  • 5
    In: Molecular Ecology Resources, Wiley, Vol. 18, No. 3 ( 2018-05), p. 511-524
    Abstract: Fungi are a megadiverse group of organisms, they play major roles in ecosystem functioning and are important for human health, food production and nature conservation. Our knowledge on fungal diversity and fungal ecology is however still very limited, in part because surveying and identifying fungi is time demanding and requires expert knowledge. We present a method that allows anyone to generate a list of fungal species likely to occur in a region of interest, with minimal effort and without requiring taxonomical expertise. The method consists of using a cyclone sampler to acquire fungal spores directly from the air to an Eppendorf tube, and applying DNA barcoding with probabilistic species identification to generate a list of species from the sample. We tested the feasibility of the method by acquiring replicate air samples from different geographical regions within Finland. Our results show that air sampling is adequate for regional‐level surveys, with samples collected 〉 100 km apart varying but samples collected 〈 10 km apart not varying in their species composition. The data show marked phenology, and thus obtaining a representative species list requires aerial sampling that covers the entire fruiting season. In sum, aerial sampling combined with probabilistic molecular species identification offers a highly effective method for generating a species list of air‐dispersing fungi. The method presented here has the potential to revolutionize fungal surveys, as it provides a highly cost‐efficient way to include fungi as a part of large‐scale biodiversity assessments and monitoring programs.
    Type of Medium: Online Resource
    ISSN: 1755-098X , 1755-0998
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2406833-0
    SSG: 12
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  • 6
    In: Methods in Ecology and Evolution, Wiley, Vol. 8, No. 4 ( 2017-04), p. 443-452
    Abstract: Joint species distribution models ( JSDM ) are increasingly used to analyse community ecology data. Recent progress with JSDM s has provided ecologists with new tools for estimating species associations (residual co‐occurrence patterns after accounting for environmental niches) from large data sets, as well as for increasing the predictive power of species distribution models ( SDM s) by accounting for such associations. Yet, one critical limitation of JSDM s developed thus far is that they assume constant species associations. However, in real ecological communities, the direction and strength of interspecific interactions are likely to be different under different environmental conditions. In this paper, we overcome the shortcoming of present JSDM s by allowing species associations covary with measured environmental covariates. To estimate environmental‐dependent species associations, we utilize a latent variable structure, where the factor loadings are modelled as a linear regression to environmental covariates. We illustrate the performance of the statistical framework with both simulated and real data. Our results show that JSDM s perform substantially better in inferring environmental‐dependent species associations than single SDM s, especially with sparse data. Furthermore, JSDM s consistently overperform SDM s in terms of predictive power for generating predictions that account for environment‐dependent biotic associations. We implemented the statistical framework as a MATLAB package, which includes tools both for model parameterization as well as for post‐processing of results, particularly for addressing whether and how species associations depend on the environmental conditions. Our statistical framework provides a new tool for ecologists who wish to investigate from non‐manipulative observational community data the dependency of interspecific interactions on environmental context. Our method can be applied to answer the fundamental questions in community ecology about how species’ interactions shift in changing environmental conditions, as well as to predict future changes of species’ interactions in response to global change.
    Type of Medium: Online Resource
    ISSN: 2041-210X , 2041-210X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2017
    detail.hit.zdb_id: 2528492-7
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  • 7
    Online Resource
    Online Resource
    Finnish Society of Forest Science ; 2019
    In:  Silva Fennica Vol. 53, No. 4 ( 2019)
    In: Silva Fennica, Finnish Society of Forest Science, Vol. 53, No. 4 ( 2019)
    Type of Medium: Online Resource
    ISSN: 2242-4075
    Language: Unknown
    Publisher: Finnish Society of Forest Science
    Publication Date: 2019
    detail.hit.zdb_id: 2016943-7
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  • 8
    In: Frontiers in Ecology and Evolution, Frontiers Media SA, Vol. 7 ( 2020-1-14)
    Type of Medium: Online Resource
    ISSN: 2296-701X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2020
    detail.hit.zdb_id: 2745634-1
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  • 9
    In: Perspectives in Ecology and Conservation, Elsevier BV, Vol. 19, No. 2 ( 2021-04), p. 161-170
    Type of Medium: Online Resource
    ISSN: 2530-0644
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2021
    detail.hit.zdb_id: 2900007-5
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  • 10
    In: Journal of Biogeography, Wiley, Vol. 45, No. 5 ( 2018-05), p. 1182-1195
    Abstract: Aphyllophoroid fungi are associated with plants, either using plants as a resource (as parasites or decomposers) or as symbionts (as mycorrhizal partners). In spite of their strong association with plants, it is unknown how much plant distributions determine their biogeographical patterns compared with environmental factors such as climate and human land use. In this study, our aims are to (1) describe the spatial diversity patterns of aphyllophoroid fungi in Europe and (2) identify the factors shaping these patterns. Location Europe, as well as the adjacent Subarctic to Arctic islands (Greenland, Faroe Islands, Iceland, Svalbard), Palestine and the south‐east coast of the Caspian Sea. Methods We compiled a dataset consisting of 14,030 fruitbody occurrences of 1,491 aphyllophoroid fungal species from 39 geographical areas (17 countries) belonging to eight biogeographical regions. We assessed the differences in fungal species richness and overall diversity and its nestedness and turnover components across biogeographical regions of Europe, as well as between southern and northern Europe (based on geographical latitude of 50° as threshold). We used cluster and ordination analyses to classify the European aphyllophoroid communities biogeographically and evaluated the importance of climate, host‐tree species, topography and human land‐use intensity in explaining biogeographical variation. Results The importance of biogeographical regions in determining European aphyllophoroid fungal communities varies for different diversity components. Species richness and nestedness are best explained by plant‐based biogeographical regions, whereas overall beta diversity and species turnover are driven mostly by variation in climate, and nestedness mostly by tree species occupancy. Beta‐diversity patterns of aphyllophoroid fungi do not differ between southern and northern Europe. Main conclusions At the continental scale, aphyllophoroid fungi are less shaped by historical legacies than vascular plant and animal communities, and trends of overall beta diversity in southern and northern Europe are similar to patterns found for bryophytes.
    Type of Medium: Online Resource
    ISSN: 0305-0270 , 1365-2699
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2020428-0
    detail.hit.zdb_id: 188963-1
    SSG: 12
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