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  • 1
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 75, No. 15_Supplement ( 2015-08-01), p. 605-605
    Abstract: Adult-type Granulosa Cell Tumors (AGCTs) are rare ovarian neoplasms comprising of 5% of all ovarian cancers. The FOXL2 (C- & gt;G) C134W mutation has been identified in 95% of all AGCTs, making it a pathognomonic defining feature. The histological diagnosis of AGCT is challenging; false diagnoses have been reported in up to 30-50% of cases in historical series. AGCTs behave unpredictably, and recurrences occur in 30-60% of the patients. The clinical outcome of molecularly defined, FOXL2-mutation positive AGCTs remains unknown. We conducted a partially prospective, population-based study of 248 AGCT patients diagnosed or treated at Helsinki University Central Hospital, Finland, during 3/1956-10/2013. Clinical data were collected from hospital records and the causes of death from the Finnish Causes of Death registry. FOXL2 mutation was analyzed from DNA extracted from FFPE (n = 171), and fresh tumor tissue samples (n = 51). Histological diagnosis was re-evaluated in Helsinki, and differential diagnostic cases (n = 24) were subjected to a blinded histological review in Vancouver. Serial plasma samples (n = 120) were collected prospectively during 8/2007- 4/2013 from 37 AGCT patients. The extracted ctDNA was preamplified using the C134W FOXL2 Taqman primer/probe. Tissue and plasma DNA were analyzed with Raindance Raindrop digital PCR technology. Statistical analyses were performed with Kaplan-Meier, and comparison of ctDNA positivity to tumor diameter with oneway ANOVA using JMP software. Of the original cohort, 165 (74%) tumors were positive and 57 (26%) tumors were negative for the FOXL2 402C- & gt;G mutation. Upon pathological review, an alternate diagnosis was set for 35 mutation negative patients in the first review (Helsinki), and for 41 patients in the final review (Vancouver). The vast majority (n = 149, 90%) of the FOXL2 mutation positive AGCT patients were diagnosed at stage I. The 5-, 10, and 15-year disease-specific survival (DSS) rates were 99%, and 93%, and 89% for the FOXL2 positive AGCT patients, compared to 58%, 53%, and 51% for the FOXL2 wild-type/misdiagnosed other tumors (p & lt;0.0001, log-rank test). 51 (31%) of the FOXL2 positive AGCT patients had a recurrence at a median time of 7.6 years (range 1-26 years) after the diagnosis. FOXL2 mutation was detected in the plasma of 17% (n = 8) of samples from patients with primary or recurrent AGCT. ctDNA FOXL2 mutation was more likely detected in patients with large tumors (p = 0.003). We have characterized the largest population based cohort of AGCT patients, and shown that the outcome of the patients with FOXL2 mutation positive AGCT was superior to those with original AGCT misdiagnosis. ctDNA is a promising tool to diagnose AGCT in a non-invasive manner. Testing FOXL2 mutation should be used as standard of care, especially in differential diagnostic cases. Citation Format: Anniina Färkkilä, Melissa K. McConechy, Winnie Yang,, Nirit Rozenberg, Noora Andersson, Leila Unkila-Kallio, Ralf Bützow, Blake Gilks, David G. Huntsman, Mikko Anttonen. The clinical outcome of patients with FOXL2 402C- & gt;G mutation positive adult-type Granulosa Cell Tumor of the ovary - a population based study with analysis of tissue and plasma ctDNA. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 605. doi:10.1158/1538-7445.AM2015-605
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2015
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  • 2
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 83, No. 21 ( 2023-11-01), p. 3517-3528
    Abstract: DICER1 is an RNase III enzyme essential for miRNA biogenesis through cleaving precursor-miRNA hairpins. Germline loss-of-function DICER1 mutations underline the development of DICER1 syndrome, a rare genetic disorder that predisposes children to cancer development in organs such as lung, gynecologic tract, kidney, and brain. Unlike classical tumor suppressors, the somatic “second hit” in DICER1 syndrome–associated cancers does not fully inactivate DICER1 but impairs its RNase IIIb activity only, suggesting a noncanonical two-hit hypothesis. Here, we developed a genetically engineered conditional compound heterozygous Dicer1 mutant mouse strain that fully recapitulates the biallelic DICER1 mutations in DICER1 syndrome–associated human cancers. Crossing this tool strain with tissue-specific Cre strains that activate Dicer1 mutations in gynecologic tract cells at two distinct developmental stages revealed that embryonic biallelic Dicer1 mutations caused infertility in females by disrupting oviduct and endometrium development and ultimately drove cancer development. These multicystic tubal and intrauterine tumors histologically resembled a subset of DICER1 syndrome–associated human cancers. Molecular analysis uncovered accumulation of additional oncogenic events (e.g., aberrant p53 expression, Kras mutation, and Myc activation) in murine Dicer1 mutant tumors and validated miRNA biogenesis defects in 5P miRNA strand production, of which, loss of let-7 family miRNAs was identified as a putative key player in transcriptomic rewiring and tumor development. Thus, this DICER1 syndrome–associated cancer model recapitulates the biology of human cancer and provides a unique tool for future investigation and therapeutic development. Significance: Generation of a Dicer1 mutant mouse model establishes the oncogenicity of missense mutations in the DICER1 RNase IIIb domain and provides a faithful model of DICER1 syndrome–associated cancer for further investigation.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2023
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  • 3
    In: Clinical Cancer Research, American Association for Cancer Research (AACR), Vol. 27, No. 3_Supplement ( 2021-02-01), p. PR002-PR002
    Abstract: While endometrial cancer (EC) has an overall good prognosis, some patients do poorly and there is room for refinement within current classification systems. Using the TCGA prognostic grouping of EC, our group developed the Proactive Molecular Risk Classifier for Endometrial Cancer (ProMisE), which reliably and reproducibly stratifies ECs into four prognostic groups: POLEmut, p53wt/NSMP, MMRd (mismatch repair deficient), and p53abn, with the best prognosis for POLEmut to worst prognosis for p53abn. In the current study, global proteomic analysis was performed using the clinical SP3-CTP workflow on archival tissues from 151 patients including 40 MMRd, 34 POLEmut, 34 p53abn and 43 p53wt/NSMP, with clinical follow up data. Included in the cohort were 11 replicate samples (different parts of the same tumor) to examine spatial heterogeneity in the proteomic profiles. Replicate samples were highly correlated to each other, with the exception of three POLEmut cases with very poor correlation in the proteome in different parts of the tumor. As POLEmut tumors have an exceedingly high mutation burden, it is not surprising that this translates to heterogeneity at the proteomic level. Disease specific survival was examined to determine prognostic significance within the whole cohort and within individual molecular subgroups. High TOMM34, PLTP or TSFM expression was correlated to poor disease specific survival in the whole cohort and independently prognostic when molecular subtype, grade and histotype are considered. High MGST, NCL or XPNPEP3 were associated with poor outcomes within the p53wt/NSMP group. POLD2 and ENAH were prognostic within the MMRd group. Within the p53abn group, ACADVL and BABAM1 were found to be prognostic, and GRB7 was found to be enriched in the p53abn group compared to other molecular subtypes. As the group with the worst prognosis, p53abn group could benefit from novel therapeutic avenues. ACADVL, BABAM1 and GRB7 all lie within pathways that are potentially targetable. Our proteomic analysis has identified prognostic markers that may be useful in further refining current molecular classification to help guide treatment decisions. Furthermore, new therapeutic interventions could be developed to target proteins and pathways identified by this proteomics screen. Citation Format: Dawn R. Cochrane, Gian Negri, Jutta Huvila, David A. Farnell, Emily Thompson, Winnie Yang, Genny Trigo-Gonzales, Amy Lum, Sandra Spencer, Ryan Riley, Samuel Leung, Christine Chow, Jamie Lim, Martin Koebel, Stefan Kommoss, Friedrich Kommoss, Lien Hoang, David G. Huntsman, Gregg Morin, Jessica N. McAlpine. Global proteomic profiling of endometrial carcinomas identify prognostic markers [abstract]. In: Proceedings of the AACR Virtual Special Conference: Endometrial Cancer: New Biology Driving Research and Treatment; 2020 Nov 9-10. Philadelphia (PA): AACR; Clin Cancer Res 2021;27(3_Suppl):Abstract nr PR002.
    Type of Medium: Online Resource
    ISSN: 1078-0432 , 1557-3265
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2021
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  • 4
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 80, No. 16_Supplement ( 2020-08-15), p. 4899-4899
    Abstract: Background: Ovarian cancers are the most common gynecologic malignancies. Low grade serous ovarian carcinoma (LGSOC) is a rare tumor, accounting for ~2000 cases diagnosed every year in North America. Most of LGSOCs are characterized by high fatality rates over the long term, with only 20% of women surviving 10 years after diagnosis, due suboptimal response to current chemotherapies. Understanding the molecular events is crucial for developing better early detection strategies and more informed therapeutic options. LGSOC harbors a relatively stable genome, with common activating mutations in BRAF, KRAS and NRAS. Recently, NRAS mutations (Q61R) were found to co-exist with EIF1AX mutations (G8E) in LGOSC, and the two mutated proteins functionally cooperate. Increasing histological and gene expression evidence suggest that the cell of origin of LGSOC is in the Fallopian tube. Low incidence of this disease means it is poorly understood, and the resulting lack of available models further limits the study of underlying mechanisms. We therefore propose to use organoid cultures. These consist of 3D multicellular units that resemble in vitro a tissue or organ of body, both structurally and functionally. Objective: to elucidate molecular events underpinning LGSOC, specifically how NRAS(Q61R) and EIF1AX (G8E) mutations co-operate to drive early stages of tumorigenesis, with organoid system and single-cell RNA sequencing (scRNA-seq) technologies. Method: To reflect genetic background and cell of origin of LGSOC, NRAS Q61R and EIF1AX G8E mutant proteins were overexpressed via lentiviral transduction in organoid cultures of normal human Fallopian tubes. After allowing organoids to establish, 2 weeks after transduction gene expression alterations were resolved with scRNA-seq. Histology of organoids were assessed for histomorphological signs of transformation. Patient-derived tumor organoids (PDTOs) were also cultured to assess how well our LGSOC-modelling organoids (LMOs) recapitulate the histological features of patient tumours. Result: LMOs showed cytologic signs of transformation such as increased nuclear/cytoplasmic ratio, prominent nucleoli, and cellular pleomorphism. Papillary structures, a major histologic characteristic of LGSOC tumor were also observed in LMOs. PDTOs showed similar cytological features and organization as LMOs. From scRNA-seq, we identified genes up-regulated in double-mutant compared to single-mutant organoids such as CA125 and TACSTD2. CA125 is one of the earliest identified biomarkers for ovarian cancer and has remained to be the most useful serum marker despite limited sensitivity and specificity; whereas TACSTD2 overexpression has been found to correlate with a chemo-resistant, aggressive malignant phenotype. Conclusion and future directions: Organoid culture and scRNA-seq is a powerful duo in studying early tumorigenesis events. We established a novel model system of LGSOC by introducing common co-occurring mutations into normal Fallopian tube tissues. Our model recapitulates to a large extent of LGSOC histology. Genes upregulated in double mutants included well-characterized biomarker (CA125) and a potential biomarker or therapeutic target (TACSTD2). Our work will be crucial for developing early detection strategies and targeted treatment options. Citation Format: Joyce Yu Han Zhang, Dawn Cochrane, Kieran Campbell, Minh Bui, Germain Ho, Cindy Shen, Winnie Yang, Clara Salamanca, Genny Trigo, David G. Huntsman. Investigating mutation co-operativity in early tumorigenesis of low-grade serous ovarian carcinoma with organoid model system and single-cell RNA sequencing [abstract] . In: Proceedings of the Annual Meeting of the American Association for Cancer Research 2020; 2020 Apr 27-28 and Jun 22-24. Philadelphia (PA): AACR; Cancer Res 2020;80(16 Suppl):Abstract nr 4899.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2020
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  • 5
    In: Clinical Cancer Research, American Association for Cancer Research (AACR), Vol. 22, No. 2_Supplement ( 2016-01-15), p. B10-B10
    Abstract: Background: Adult granulosa cell tumors of the ovary are molecularly unique as 94% of tumours are defined by the pathognomonic FOXL2 402C & gt;G C134W mutation. More accurate methods are needed for the diagnosis and follow-up of AGCT patients. This study was designed to evaluate circulating tumor DNA (ctDNA) FOXL2 mutation as a diagnostic and monitoring tool in AGCT patients. Methods: An optimized ddPCR assay was performed on free ctDNA extracted from 120 serial plasma samples (1-2mL) collected prospectively from 35 AGCT patients during 8/2007-4/2014 in Helsinki, Finland and in Vancouver, Canada. Clinical follow-up information was retrieved from hospital records. The median follow-up time was 6.3 (range 1.1 – 33.9) years. The statistical analyses were performed with JMP Pro 10 software. Results: Of the 35 AGCT patients, 33 (31 Finland, 2 Vancouver) patients had measurable disease at the time of sample collection, and 12 (36%) harbored a detectable plasma ctDNA FOXL2 mutation. The FOXL2 mutation was identified in the ctDNA of 6/17 (36.3%) patients with primary, and 6/31 (19.4%) of patients with recurrent disease, respectively. Median tumor size was significantly larger in the mutation positive cases (13.5cm) compared to the mutation negatives (7.5cm; p=0.003), and the mutation was present in 9/16 (56%) of samples from patients with tumors over 10cm in diameter. Similarly, ctDNA FOXL2 mutation frequency positively correlated to tumor size (Spearman's Rho=0.32, p=0.003). The sensitivity of the ddPCR assay to detect AGCT disease presence was 25%, while the specificity was 90% (ROC-AUC 0.58). In patients with primary tumors, the ctDNA FOXL2 positivity did not correlate with tumor stage, and none of these patients has presented with a tumor recurrence during follow-up. This is putatively due to the relatively short follow-up time of (3.6 years, range 1.1-6.3 years). Given that the median time to relapse has been reported to be 7-8 years, no definitive conclusions can be drawn on the effect of ctDNA FOXL2 on the risk of AGCT recurrence. We identified the presence of low-level ctDNA FOXL2 mutations in four patient's plasma that did not have clinical disease present. From patient ID 208, the first sample was drawn 7 months post primary tumor operation and already then the FOXL2 mutation was detected at 1.4% frequency. Subsequently, the FOXL2 ctDNA mutation was detected at two time points during follow-up, before the elevation of serum markers and clinical relapse with multiple metastases. From patient ID 221, we identified the ctDNA FOXL2 mutation in a plasma sample taken upon primary surgery. However, the FOXL2 mutation was identified in plasma samples taken at 10 and 34 months post primary surgery. This patient was last monitored with no clinical signs of relapse 49 months post surgery. In two patients (ID 213, 216), the FOXL2 mutation was detected at primary diagnosis, then once (at 24 months for ID 213, and at 38 months for ID 216) post primary surgery, and no subsequent relapse had been detected for these two patients during follow-up. In total, we identified three patients with the ctDNA FOXL2 mutation present in the plasma with no evidence of subsequent recurrence. Since the FOXL2 mutation is specific to AGCT, the only source of ctDNA FOXL2 mutation is likely to be from occult AGCT cells, and further monitoring of these patients over time will reveal if they will develop a clinical AGCT recurrence. Conclusions: As a proof of concept, we established that specific molecular diagnosis and detection of primary and recurrent AGCT can be achieved non-invasively with a “liquid biopsy” and ctDNA FOXL2 mutation testing. Further studies are needed to increase the sensitivity and clinical applicability of ctDNA FOXL2 mutation testing in AGCT patients. Citation Format: Anniina Färkkilä, Melissa K. McConechy, Winnie Yang, Aline Talhouk, Ying Ng, Ryan Morin, Annika Riska, Jessica N. McAlpine, Leila Unkila-Kallio, Mikko Anttonen, David G. Huntsman. FOXL2 402C & gt;G mutation can be identified in the circulating tumor DNA of patients with adult-type granulosa cell tumor. [abstract]. In: Proceedings of the AACR Special Conference on Advances in Ovarian Cancer Research: Exploiting Vulnerabilities; Oct 17-20, 2015; Orlando, FL. Philadelphia (PA): AACR; Clin Cancer Res 2016;22(2 Suppl):Abstract nr B10.
    Type of Medium: Online Resource
    ISSN: 1078-0432 , 1557-3265
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
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  • 6
    In: Gynecologic Oncology, Elsevier BV, Vol. 160, No. 2 ( 2021-02), p. 568-578
    Type of Medium: Online Resource
    ISSN: 0090-8258
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2021
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  • 7
    In: Journal of the National Cancer Institute, Oxford University Press (OUP), Vol. 108, No. 11 ( 2016-11), p. djw134-
    Type of Medium: Online Resource
    ISSN: 0027-8874 , 1460-2105
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    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2016
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  • 8
    In: American Journal of Surgical Pathology, Ovid Technologies (Wolters Kluwer Health), Vol. 43, No. 5 ( 2019-05), p. 628-638
    Abstract: Sertoli-Leydig cell tumors (SLCTs) are rare ovarian sex cord-stromal neoplasms. The only known recurrent genetic abnormality is DICER1 mutation, with rare mutations reported in FOXL2 . We set out to establish a molecular classifier using DICER1 and FOXL2 somatic mutation status and clinicopathologic features in 42 SLCTs. Five tumors (12%) were well differentiated, 31 (74%) moderately differentiated, and 6 (14%) poorly differentiated. Eight (19%) had heterologous elements, and 2 (5%) showed retiform differentiation; all 10 were moderately differentiated. DICER1 RNase IIIb domain mutations were identified in 18/41 (44%; 17 moderately, 1 poorly differentiated), including all cases with retiform or heterologous elements. FOXL2 c .402C 〉 G (p.C134W) mutation was identified in 8/42 (19%) tumors (5 moderately, 3 poorly differentiated). DICER1 and FOXL2 mutations were mutually exclusive. Median age for the cohort was 47 years (range, 15 to 90 y). Patients with DICER1 mutations were younger (median, 24.5 y; range, 15 to 62 y) than patients with FOXL2 mutation (median, 79.5 y; range, 51 to 90 y) ( P 〈 0.0001). Nine of 10 tumors with retiform or heterologous elements occurred in premenopausal patients (median, 26.5 y; range, 15 to 57 y). Patients with tumors that were wild type for DICER1 and FOXL2 (15/42, 37%) had an intermediate age (median, 51 y; range, 17 to 74 y). All tumors were FOXL2 positive by immunohistochemistry. Patients with FOXL2 mutation trended toward presenting more often with abnormal bleeding ( P =0.13); DICER1 -mutant patients trended toward having more androgenic symptoms ( P =0.22). Our data suggest at least 3 molecular subtypes of SLCT with distinct clinicopathologic features: DICER1 mutant (younger, more androgenic symptoms, moderately/poorly differentiated, retiform or heterologous elements), FOXL2 mutant (postmenopausal, abnormal bleeding, moderately/poorly differentiated, no retiform or heterologous elements), and DICER1 / FOXL2 wild type (intermediate age, no retiform or heterologous elements, including all well-differentiated tumors).
    Type of Medium: Online Resource
    ISSN: 0147-5185
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    Language: English
    Publisher: Ovid Technologies (Wolters Kluwer Health)
    Publication Date: 2019
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  • 9
    In: New England Journal of Medicine, Massachusetts Medical Society, Vol. 363, No. 16 ( 2010-10-14), p. 1532-1543
    Type of Medium: Online Resource
    ISSN: 0028-4793 , 1533-4406
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    Language: English
    Publisher: Massachusetts Medical Society
    Publication Date: 2010
    detail.hit.zdb_id: 207154-X
    detail.hit.zdb_id: 1468837-2
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  • 10
    In: The Journal of Molecular Diagnostics, Elsevier BV, Vol. 19, No. 1 ( 2017-01), p. 126-136
    Type of Medium: Online Resource
    ISSN: 1525-1578
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    Language: English
    Publisher: Elsevier BV
    Publication Date: 2017
    detail.hit.zdb_id: 2000060-1
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