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  • 1
    In: Scientific Reports, Springer Science and Business Media LLC, Vol. 13, No. 1 ( 2023-10-03)
    Abstract: Quantitative reverse transcriptase polymerase chain reaction (qRT-PCR) is the gold standard method for SARS-CoV-2 detection, and several qRT-PCR kits have been established targeting different genes of the virus. Due to the high mutation rate of these genes, false negative results arise thus complicating the interpretation of the diagnosis and increasing the need of alternative targets. In this study, an alternative approach for the detection of SARS-CoV-2 viral RNA targeting the membrane (M) gene of the virus using qRT-PCR was described. Performance evaluation of this newly developed in-house assay against commercial qRT-PCR kits was done using clinical oropharyngeal specimens of COVID-19 positive patients. The limit of detection was determined using successive dilutions of known copies of SARS-CoV-2 pseudovirus. The M gene based assay was able to detect a minimum of 100 copies of virus/mL indicating its capacity to detect low viral load. The assay showed comparable accuracy, sensitivity and specificity with commercially available kits while detecting all the variants efficiently. The study concluded that the in-house M gene based assay might be an effective alternative for the currently available commercial qRT-PCR kits.
    Type of Medium: Online Resource
    ISSN: 2045-2322
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 2615211-3
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  • 2
    Online Resource
    Online Resource
    Bangladesh Academy of Sciences ; 1970
    In:  Bangladesh Journal of Microbiology Vol. 24, No. 2 ( 1970-01-01), p. 133-136
    In: Bangladesh Journal of Microbiology, Bangladesh Academy of Sciences, Vol. 24, No. 2 ( 1970-01-01), p. 133-136
    Abstract: Survival study of toxigenic Vibrio cholerae O1 Classical Inaba and El Tor Ogawa biotypes was carried out in artificial microcosm without any nutrients under stressed physiochemical conditions. The organisms were found to undergo viable but non-culturable (VBNC) state, which was detected by polymerase chain reaction (PCR) technique using primers that flank a specific fragment of the cholera toxin gene (ctx). The findings of the study showed that about 89% of samples gave positive result although the organisms were in nonculturable state. Depending upon the conditions the Classical biotype of vibrios had undergone non-culturable state within 2-15 days and 55-92 days were subjected to PCR assay after 45 and 120 days of incubation respectively. A similar tend was also observed in case of El Tor biotype. With non-culturable cell only 5 of 18 microcosms (of both Classical and El Tor biotypes) at pH 4.5 showed no viability. Since the PCR assay demonstrated positive results after 90 (in case of El Tor biotype) and 120 days (in case of Classical biotype), the total survival time thus ranges over 3 and 4 months. Thus PCR has an important advantage over the techniques those are used in routine laboratories for the identification of pathogenic organisms. Keywords: Physicochemical stresses, Survivality, Vibrio cholerae, Artificial microcosms, Polymerase chain reaction (PCR), Non-culturable state, Viable but non-culturable (VBNC)DOI: http://dx.doi.org/10.3329/bjm.v24i2.1258 Bangladesh J Microbiol, Volume 24, Number 2, December 2007, pp 133-136
    Type of Medium: Online Resource
    ISSN: 2408-8374 , 1011-9981
    Language: Unknown
    Publisher: Bangladesh Academy of Sciences
    Publication Date: 1970
    detail.hit.zdb_id: 2549245-7
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  • 3
    Online Resource
    Online Resource
    Bangladesh Academy of Sciences ; 2022
    In:  Bangladesh Journal of Microbiology Vol. 38, No. 2 ( 2022-02-06), p. 79-85
    In: Bangladesh Journal of Microbiology, Bangladesh Academy of Sciences, Vol. 38, No. 2 ( 2022-02-06), p. 79-85
    Abstract: Chikungunya fever (CHIKF) is a mosquito-borne febrile illness caused by the Chikungunya virus (CHIKV). Bangladesh has documented several outbreaks of CHIKF since it was first reported in 2008. The latest CHIKF outbreak occurred in the Dhaka in 2017. In this study, a serosurvey of the 2017 outbreak was conducted during its peak. The study involved the assessment of CHIKV immunoreactions among participants suffering from CHIKF related symptoms. One hundred blood samples were collected from patients suffering from CHIKF-associated symptoms and were subsequently tested for the presence of anti-CHIKV IgM and/or IgG antibodies. Data based on clinical symptoms and the demographics of the participants were recorded and analyzed. Seventy-four percent of the studied patients (n = 100) possessed anti-CHIKV antibodies. Among this seropositive group (n = 74), almost 62% contained anti-CHIKV IgM and IgG antibodies, whereas 10% contained only anti-CHIKV IgM antibodies indicating recent infection. Anti-CHIKV IgG antibodies were found in 28% of patients. Among the symptoms examined, polyarthralgia showed a highly significant relationship (P 〈 0.001), whereas high fever and the presence of rash demonstrated a significant association with CHIKV seropositivity (P 〈 0.05). Discoveries made on this research can better help public health officials to gain a comprehensive insight into the seroepidemiology of the condition based in the city and maintain constant vigilance against any future outbreak. Bangladesh J Microbiol, Volume 38, Number 2, December 2021, pp 79-85
    Type of Medium: Online Resource
    ISSN: 2408-8374 , 1011-9981
    Language: Unknown
    Publisher: Bangladesh Academy of Sciences
    Publication Date: 2022
    detail.hit.zdb_id: 2549245-7
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  • 4
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2012
    In:  Indian Journal of Microbiology Vol. 52, No. 3 ( 2012-9), p. 400-405
    In: Indian Journal of Microbiology, Springer Science and Business Media LLC, Vol. 52, No. 3 ( 2012-9), p. 400-405
    Type of Medium: Online Resource
    ISSN: 0046-8991 , 0973-7715
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2012
    detail.hit.zdb_id: 2471820-8
    SSG: 12
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  • 5
    In: Frontiers in Microbiology, Frontiers Media SA, Vol. 14 ( 2024-1-8)
    Abstract: Wastewater discharged from hospitals is a recognized contributor to the dissemination of antibiotic-resistant bacteria and their associated genetic traits into the environment. This study focused on the analysis of β-lactamase-producing pathogenic bacteria within untreated biomedical wastewater originating from various hospitals in Dhaka City, Bangladesh, as well as in silico evaluation and structural activity relationship mentioned antibiotics were evaluated. In silico drug design techniques were applied to identify the relationship with how the functional group impacts the binding energy. Out of the 184 isolates obtained from well-established hospital sewage discharge points in Dhaka, 89 were identified as β-lactamase positive. These bacteria were subjected to antimicrobial susceptibility testing using the VITEK-2 assay, and their profiles of extended-spectrum beta-lactamase (ESBL) production were determined through molecular methodologies. Among the β-lactamase-positive isolates, considerable resistance was observed, particularly against ampicillin, Ceftriaxone, Cefuroxime, and Meropenem. The predominant resistant species included Escherichia coli, Acinetobacter baumannii, Pseudomonas aeruginosa , and Enterobacter cloacae . The study identified the prevalence of ESBL-producing genes, with blaNDM-1 being the most prevalent, followed by bla OXA -1, blaSHV , bla CTX - M , and bla KPC . None of the isolates carried the bla TEM gene. In addition to characterizing these bacteria, the research explored ways to enhance the binding energy of four existing antibiotics as new inhibitors through computational studies. The findings revealed significant improvements in binding energy. Specifically, Meropenem initially exhibited a binding energy of −7.5 kcal/mol, notably increasing to −8.3 kcal/mol after modification. With an initial binding energy was only −7.9 kcal/mol, Ampicillin experienced an enhancement, reaching −8.0 kcal/mol post-modification. Similarly, Ceftriaxone, with an initial binding energy of −8.2 kcal/mol, increased to −8.5 kcal/mol following structural adjustments. Finally, Cefuroxime, initially registering a binding energy of −7.1 kcal/mol, substantially increased to −8.9 kcal/mol after modification. This finding establishes a foundation for future investigations in the development of modified antibiotics to address the issue of antibiotic resistance. It presents prospective remedies for the persistent problem of antibiotic-resistant bacteria in healthcare and the environment.
    Type of Medium: Online Resource
    ISSN: 1664-302X
    Language: Unknown
    Publisher: Frontiers Media SA
    Publication Date: 2024
    detail.hit.zdb_id: 2587354-4
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