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  • 1
    In: Magnetic Resonance in Medicine, Wiley, Vol. 91, No. 5 ( 2024-05), p. 1803-1821
    Abstract: has often been proposed as a quantitative imaging biomarker for diagnosis, prognosis, and treatment response assessment for various tumors. None of the many software tools for quantification are standardized. The ISMRM Open Science Initiative for Perfusion Imaging–Dynamic Contrast‐Enhanced (OSIPI‐DCE) challenge was designed to benchmark methods to better help the efforts to standardize measurement. Methods A framework was created to evaluate values produced by DCE‐MRI analysis pipelines to enable benchmarking. The perfusion MRI community was invited to apply their pipelines for quantification in glioblastoma from clinical and synthetic patients. Submissions were required to include the entrants' values, the applied software, and a standard operating procedure. These were evaluated using the proposed score defined with accuracy, repeatability, and reproducibility components. Results Across the 10 received submissions, the score ranged from 28% to 78% with a 59% median. The accuracy, repeatability, and reproducibility scores ranged from 0.54 to 0.92, 0.64 to 0.86, and 0.65 to 1.00, respectively (0–1 = lowest–highest). Manual arterial input function selection markedly affected the reproducibility and showed greater variability in analysis than automated methods. Furthermore, provision of a detailed standard operating procedure was critical for higher reproducibility. Conclusions This study reports results from the OSIPI‐DCE challenge and highlights the high inter‐software variability within estimation, providing a framework for ongoing benchmarking against the scores presented. Through this challenge, the participating teams were ranked based on the performance of their software tools in the particular setting of this challenge. In a real‐world clinical setting, many of these tools may perform differently with different benchmarking methodology.
    Type of Medium: Online Resource
    ISSN: 0740-3194 , 1522-2594
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2024
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  • 2
    In: Arthritis Research & Therapy, Springer Science and Business Media LLC, Vol. 15, No. 2 ( 2013), p. R44-
    Type of Medium: Online Resource
    ISSN: 1478-6354
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2013
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  • 3
    In: European Journal of Radiology, Elsevier BV, Vol. 136 ( 2021-03), p. 109534-
    Type of Medium: Online Resource
    ISSN: 0720-048X
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2021
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  • 4
    In: Neoplasia, Elsevier BV, Vol. 22, No. 12 ( 2020-12), p. 820-830
    Type of Medium: Online Resource
    ISSN: 1476-5586
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2020
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  • 5
    In: Breast Cancer Research, Springer Science and Business Media LLC, Vol. 23, No. 1 ( 2021-11-27)
    Abstract: The purpose of this study was to determine whether advanced quantitative magnetic resonance imaging (MRI) can be deployed outside of large, research-oriented academic hospitals and into community care settings to predict eventual pathological complete response (pCR) to neoadjuvant therapy (NAT) in patients with locally advanced breast cancer. Methods Patients with stage II/III breast cancer ( N  = 28) were enrolled in a multicenter study performed in community radiology settings. Dynamic contrast-enhanced (DCE) and diffusion-weighted (DW)-MRI data were acquired at four time points during the course of NAT. Estimates of the vascular perfusion and permeability, as assessed by the volume transfer rate ( K trans ) using the Patlak model, were generated from the DCE-MRI data while estimates of cell density, as assessed by the apparent diffusion coefficient (ADC), were calculated from DW-MRI data. Tumor volume was calculated using semi-automatic segmentation and combined with K trans and ADC to yield bulk tumor blood flow and cellularity, respectively. The percent change in quantitative parameters at each MRI scan was calculated and compared to pathological response at the time of surgery. The predictive accuracy of each MRI parameter at different time points was quantified using receiver operating characteristic curves. Results Tumor size and quantitative MRI parameters were similar at baseline between groups that achieved pCR ( n  = 8) and those that did not ( n  = 20). Patients achieving a pCR had a larger decline in volume and cellularity than those who did not achieve pCR after one cycle of NAT ( p   〈  0.05). At the third and fourth MRI, changes in tumor volume, K trans , ADC, cellularity, and bulk tumor flow from baseline (pre-treatment) were all significantly greater ( p   〈  0.05) in the cohort who achieved pCR compared to those patients with non-pCR. Conclusions Quantitative analysis of DCE-MRI and DW-MRI can be implemented in the community care setting to accurately predict the response of breast cancer to NAT. Dissemination of quantitative MRI into the community setting allows for the incorporation of these parameters into the standard of care and increases the number of clinical community sites able to participate in novel drug trials that require quantitative MRI.
    Type of Medium: Online Resource
    ISSN: 1465-542X
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
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  • 6
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 82, No. 4_Supplement ( 2022-02-15), p. P3-03-03-P3-03-03
    Abstract: Background: Early and accurate prediction of response to neoadjuvant therapy (NAT) would empower personalization of breast cancer treatment regimens based on expected response. Noninvasive, quantitative dynamic contrast-enhanced (DCE-MRI) and diffusion-weighted magnetic resonance imaging (DW-MRI), when performed during the course of NAT, can accurately predict the ultimate pathological response. While these techniques have been incorporated into clinical trials in the academic setting, they have not yet been translated to the community setting, where most cancer patients receive their care. Implementation of quantitative MRI in the community setting widely expands the potential impact it can provide by 1) allowing community settings to participate in clinical trials that require quantitative MRI, and 2) advancing quantitative MRI towards standard-of-care for prediction of response in breast cancer. Methods: Women with locally advanced breast cancer (N = 28) were imaged four times during the course of NAT: 1) prior to the start of NAT, 2) after 1 cycle of NAT, 3) after 2-4 cycles of NAT, and 4) 1 cycle after MRI #3. Imaging data was acquired on 3T Siemens Skyra scanners equipped with breast coils and sited in a community hospital and radiology clinic, respectively. DW-MRI and DCE-MRI were acquired over 10 slices of 5 mm thickness. DW-MRI was acquired with diagonal monopolar diffusion-encoding gradients with b-values of 0, 200, and 800 s/mm2 in a total scan time of 1 minute 39 seconds. Voxel wise tumor cellularity was quantified using the apparent diffusion coefficient (ADC). For DCE-MRI, a gadolinium-based contrast agent was administered intravenously at 2 mL/sec after the acquisition of baseline scans. DCE-MRI data was acquired dynamically with a temporal resolution of 7.27 seconds for a total acquisition time of 8 minutes. The volume transfer constant Ktrans was calculated using Patlak analysis of DCE-MRI data to characterize the tumor vasculature. The tumor was semi-automatically segmented using a manually drawn region of interest followed by fuzzy c-means clustering of DCE-MRI data to identify a functional tumor volume. Measurements of tumor volume were combined with both ADC and Ktrans to yield metrics of tumor cellularity and bulk tumor flow, respectively. Results: Women who achieved pathological complete response at the time of surgery (pCR; n=8) displayed significantly different treatment-induced changes in MRI-derived tumor parameters versus women who did not achieve pCR (non-pCR, n=20). After 1 cycle of NAT, women who achieved pCR had smaller functional tumor volume and lower cellularity (p & lt; 0.05) than non-pCR study participants. At the third and fourth MRI, tumor volume, ADC, Ktrans, cellularity, and bulk tumor flow were all significantly different between the pCR and non-pCR cohorts (p & lt; 0.05). Of note, longest tumor diameter was not predictive of pCR at any time point in this study. Conclusions: This study demonstrates that quantitative DCE- and DW-MRI can be implemented successfully in community care facilities within standard-of-care settings for imaging locally advanced breast cancer. Metrics extracted from the change in DW-MRI (ADC) and DCE-MRI (Ktrans) can accurately predict pathological complete response to neoadjuvant therapy and may be more sensitive to tumor response than the RECIST criteria. Furthermore, incorporating quantitative metrics with tumor volume further increases the ability to predict pathological response to NAT in locally advanced breast cancer. While there are still challenges to address to effectively implement these quantitative metrics into the clinical workflow, this study is first in its kind to transition a decade’s worth of quantitative MRI advancements from academic settings into standard-of-care. Citation Format: John Virostko, Anna G Sorace, Kalina P Slavkova, Anum S Kazerouni, Angela M Jarrett, Julie C DiCarlo, Stefanie Woodard, Sarah Avery, Boone W Goodgame, Debra Patt, Thomas E Yankeelov. Quantitative multiparametric MRI predicts response to neoadjuvant therapy in the community setting [abstract]. In: Proceedings of the 2021 San Antonio Breast Cancer Symposium; 2021 Dec 7-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2022;82(4 Suppl):Abstract nr P3-03-03.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2022
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  • 7
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 82, No. 4_Supplement ( 2022-02-15), p. P3-02-09-P3-02-09
    Abstract: Background: Standard of care (SOC) breast MRI exams typically acquire 4-7 frames of dynamic contrast-enhanced MRI (DCE-MRI) for cancer screening and staging. Post-contrast images depict lesion spiculations and boundaries to identify and characterize tumors. Pharmacokinetic (PK) analysis of DCE-MRI involves modeling blood flow to the lesion and surrounding tissue and has shown promise in diagnosis and prediction of therapeutic response. Currently, SOC DCE-MRI requires ~60-90 seconds per volume for images with sufficient quality and spatial resolution. However, PK analysis of DCE-MRI requires faster time course sampling. For this reason, PK modeling is limited to research scans with lower spatial resolution and higher temporal resolution. PK modeling would improve feedback of treatment response, and implementation in the SOC exam would increase imaging trial participation. In this study, we tested the estimation of Ktrans, a mixed perfusion and permeability PK parameter, from three images at optimal time points after contrast agent (CA) injection, and compared it to the Ktrans estimation from analysis of the full-length time course.. Methods: Women (N=23) with newly diagnosed invasive breast cancers who were eligible for neoadjuvant therapy (NAT) were scanned with a research MRI protocol as part of a treatment-monitoring study. Images acquired prior to the start of NAT were used. MRI was performed on 3.0T Siemens Skyra scanners at two sites with bilateral breast coils. The research protocol included ten sagittal slices centered about the primary tumor. The DCE-MRI images came from a fast sequence with 1.3 × 1.3 × 5.0 mm resolution acquired at 7.3 seconds per frame (66 frames total,) with a gadolinium-based CA injected one minute into the scan. A population arterial input function was used to implement a mathematical graph-based search of possible tissue CA concentration curves from the expected range of PK parameters. The search results gave a set of three optimized sub-sampled timepoints, Topt, from the full set of sample times, Tfull, at which to best sample the CA concentration curves to optimally estimate PK values. The imaging data was analyzed to find one parameter map from image times Tfull, and another from the subset of images at times Topt. The difference in Ktrans was computed at each parameter map voxel, and the concordance correlation coefficient (CCC) was computed per patient to determine agreement. The median Ktrans values were also compared for each patient. Results: The graph-based search of CA concentration curves found optimal times Topt of 37, 66, and 153 seconds after injection. The averaged values over all patients for median and maximum Ktrans from the original Tfull image set were 0.07 and 0.5 (min)-1. The average difference in Ktrans values between the Topt and Tfull sets was 0.02 (min)-1. When the median Ktrans values for each patient were compared, the average difference in median Ktrans values was 15% +/- 9%. The concordance correlation coefficients comparing the Topt and Tfull -sampled parameter maps for each patient were 0.89 +/- 0.12, showing high agreement. Discussion: This retrospective analysis suggests that it is possible to estimate PK parameters from a few properly selected post-contrast images inserted into a SOC DCE-MRI exam. The combination of optimal timing with fast acquisition techniques for high-resolution imaging could be used to provide quantitative data while preserving post-contrast images with the necessary spatial resolution for clinical reading. Importantly, the test images were acquired in the community setting with widely available MRI hardware, further indicating the potential for integration with SOC exams. Funding: NCI U24 CA226110, NCI U01 CA174706, NCI U01 CA142565, CPRIT RR160005 Citation Format: Julie C DiCarlo, Angela M Jarrett, Anum S Kazerouni, John Virostko, Anna G Sorace, Kalina P Slavkova, Debra Patt, Boone W Goodgame, Sarah Avery, Thomas E Yankeelov. Three timepoint pharmacokinetic modeling to incorporate within standard of care MRI breast exams [abstract]. In: Proceedings of the 2021 San Antonio Breast Cancer Symposium; 2021 Dec 7-10; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2022;82(4 Suppl):Abstract nr P3-02-09.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2022
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  • 8
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2020
    In:  Cancer Research Vol. 80, No. 4_Supplement ( 2020-02-15), p. P6-02-04-P6-02-04
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 80, No. 4_Supplement ( 2020-02-15), p. P6-02-04-P6-02-04
    Abstract: Introduction. Dynamic contrast-enhanced (DCE) MRI provides quantitative information on tissue properties that enhances the specificity of breast cancer diagnosis; however, mammography remains the standard screening protocol due to its lower cost. There is a push to develop more accessible abbreviated breast MRI scans for screening high-risk patients without compromising diagnostic power. Here we analyze the effects of the limited dynamic time course afforded by an abbreviated breast MRI exam on the diagnostic performance of quantitative DCE-MRI. Methods and Results. We evaluate the ability of five quantitative measures to retrospectively differentiate malignant (N=21) and benign (N=24) lesions using DCE-MRI data acquired with 15 second temporal resolution in a cohort of 45 patients from the ACRIN 6883 multi-site breast trial. The first two measures are the volume transfer constant (Ktrans) estimated by, respectively, fitting the standard Kety-Tofts (STK) perfusion model and the Patlak approximation of the STK model (Patlak model) to patient data sets that have been truncated into a series of abbreviated-time courses (ATCs). An ATC is defined as containing the first n time points of a time course and is referred to as “ATC n.” For the first measure, n is the inclusive set of integers from 7 to 14, and, for the second measure, n is the set of 4 and 7 since the Patlak approximation only holds during the initial enhancement. For each patient, the fitting procedure provides Ktrans values for each voxel within the region of interest (ROI). The values are averaged and statistically evaluated for performance in discriminating malignant from benign tumors. For Ktrans, the maximum AUC of 0.61 was achieved using ATC 14 (i.e., 3.50 minutes), while for the Patlak model, the maximum AUC of 0.55 was achieved using ATC 7 (i.e., 1.75 minutes). The third measure is a modified median signal enhancement ratio (SER) computed for a series of four ATCs per patient, where n is now the inclusive set of integers 8 through 11. The SER is defined as (S1-S0)/(S2-S0), where S0 is the pre-contrast signal, S1 is the peak enhancement, and S2 is the signal at the last time point. Abbreviating the time course effectively shifts S2 to an earlier time point. For each ATC for each patient, the SERs are computed for all voxels within the ROI after which the median is computed. We calculate the AUC under the ROC curve to evaluate the diagnostic performance of each ATC-derived median SER. ATC 10 (i.e., 2.5 minutes) yields a maximum AUC of 0.79 among all ATCs. The fourth and fifth measures are, respectively, the area under the enhancement phase and the slope of the washout phase of the patient DCE time courses. The fourth measure is computed by numerically integrating the time course of each voxel within a patient’s ROI between the first and seventh time points and averaging the values. Similarly, for the fifth measure, the slope is calculated between the seventh and last time points within the ROI and averaged. We find that the fourth measure yields an AUC under the ROC curve of 0.76, and the fifth measure yields an AUC of 0.77. Discussion and Conclusion. The highest AUC from the two pharmacokinetic measures is 0.61, which suggests ineffective diagnostic ability in this data set. The median SER computed using ATC10 yields an AUC of 0.79, showing promise as a quantitative diagnostic tool in the abbreviated scan setting. Inter-site variability and the low temporal resolution of this data set may explain the relatively lower performance of measures one, two, four, and five as compared to measure three. It is necessary to repeat this analysis using a state-of-the-art acquisition of DCE-MRI data to determine the specificity of the remaining quantitative measures to imaging specifications. Citation Format: Kalina P Slavkova, Julie C DiCarlo, Anum K Syed, Chengyue Wu, John Virostko, Anna G Sorace, Thomas E Yankeelov. Investigating the feasibility of performing quantitative DCE-MRI in an abbreviated breast examination [abstract]. In: Proceedings of the 2019 San Antonio Breast Cancer Symposium; 2019 Dec 10-14; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2020;80(4 Suppl):Abstract nr P6-02-04.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2020
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  • 9
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2012
    In:  Arthritis Research & Therapy Vol. 14, No. 3 ( 2012), p. R131-
    In: Arthritis Research & Therapy, Springer Science and Business Media LLC, Vol. 14, No. 3 ( 2012), p. R131-
    Type of Medium: Online Resource
    ISSN: 1478-6354
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2012
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  • 10
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 81, No. 4_Supplement ( 2021-02-15), p. PS13-18-PS13-18
    Abstract: Background: This study evaluates the ability to predict the response of locally advanced breast cancers to neoadjuvant therapy (NAT) using patient-specific magnetic resonance imaging (MRI) data and a biophysical mathematical model. The 3D mathematical model consists of three parts: tumor cell proliferation, tumor spread (diffusion), and treatment. In particular, the tumor cells proliferate according to logistic growth, and the diffusion term is coupled to the mechanical properties of the surrounding fibroglandular and adipose tissues to inform individual tumor growth patterns (specific to each patient’s anatomy). The model’s treatment term accounts for tumor cell reduction according to approximate local drug delivery for each patient. Methods: Patients (N = 21) with intermediate to high grade invasive breast cancers with varying receptor status, who were eligible for NAT as a component of their clinical care, were recruited. Each patient was treated with standard-of-care consisting of one or two NAT regimens in sequence followed by surgical resection of any residual tumor. MRI data are acquired at four time points: 1) prior to initiation of NAT, 2) after 1 cycle of NAT, 3) after 2-4 cycles of NAT, and 4) 1 cycle after scan 3. The MRI data is processed and evaluated using our semi-automated pipeline. Specifically, diffusion-weighted MRI data is utilized to characterize the cellularity throughout the tumor tissue, and dynamic contrast-enhanced (DCE-) MRI data is used to segment the breast tissue and analyze the local drug delivery using pharmacokinetic analysis and population-derived plasma curves of drug concentrations. The model’s predictive ability is assessed using three different strategies. First, the model is calibrated using each patient’s first two scans to enable predictions of the total tumor cellularity, volume, and longest axis that are directly compared to the values measured from their third scan. Second, the model’s predictions for tumor response are compared to the corresponding response evaluation criteria in solid tumors (RECIST) results. Third, the model is re-calibrated using scans 3 and 4 and simulated to the time of surgery to compare the model’s predictions to each patient’s response status determined by surgical pathology. Results: Calibrating the model with MRI data for one cycle of therapy yields predictions strongly correlated with tumor response measured from each patient’s third scan, concordance correlation coefficients of 0.91, 0.90, and 0.86 for total cellularity, volume, and longest axis, respectively (p & lt; 0.01, N = 18). The model’s predictions are significantly (p & lt; 0.01) correlated with tumor response as designated by RECIST for the cohort. Specifically, the model predicts greater percent reduction in the longest axis for the RECIST designated responder group (i.e., complete response and partial response) compared to non-responders. At the time of surgery, the model predicts changes in total tumor cellularity from baseline that are significantly (p & lt; 0.01) correlated with pathological response status—an area under the receiver operator characteristic curve of 0.92 and a sensitivity and specificity of 1.0 and 0.74, respectively. Discussion: These preliminary results suggest that this clinical-mathematical approach can be predictive of tumor response very early in the course of NAT on a patient-specific basis. Moreover, the study was performed in the community-care setting across a heterogenous group of patients, indicating the approach may be practical for wide-spread application. NCI U01 CA174706, NCI U01 CA154602, CPRIT RR160005, ACS-RSG-18-006-01-CCE, R01CA240589, NCI-U24CA226110, CPRIT RR160093 Citation Format: Angela M Jarrett, David A. Hormuth, II, Anum K Syed, Chengyue Wu, John Virostko, Anna G Sorace, Julie C DiCarlo, Jeanne Kowalski, Debra Patt, Boone Goodgame, Sarah Avery, Thomas E Yankeelov. Predicting breast cancer response to neoadjuvant therapies using a mathematical model individualized with patient-specific magnetic resonance imaging data: Preliminary Results [abstract]. In: Proceedings of the 2020 San Antonio Breast Cancer Virtual Symposium; 2020 Dec 8-11; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2021;81(4 Suppl):Abstract nr PS13-18.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2021
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