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  • 1
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    Planomicrobium iranicum sp. nov., a novel slightly halophilic bacterium isolated from a hypersaline wetland
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 69, No. 5 ( 2019-05-01), p. 1433-1437
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 69, No. 5 ( 2019-05-01), p. 1433-1437
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003332
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
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  • 2
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    Oceanobacillus halophilus sp. nov., a novel moderately halophilic bacterium from a hypersaline lake
    Microbiology Society ; 2016
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 66, No. 3 ( 2016-03-01), p. 1317-1322
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 66, No. 3 ( 2016-03-01), p. 1317-1322
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.000952
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2016
    detail.hit.zdb_id: 215062-1
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  • 3
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    Alteribacillus bidgolensis gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Bacillus persepolensis as Alteribacillus persepolensis comb. nov.
    Microbiology Society ; 2012
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 62, No. Pt_11 ( 2012-11-01), p. 2691-2697
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_11 ( 2012-11-01), p. 2691-2697
    Abstract: A novel Gram-stain-positive, moderately halophilic bacterium, designated strain P4B T , was isolated from water of the hypersaline Aran-Bidgol lake in Iran and characterized taxonomically by using a polyphasic approach. Cells of strain P4B T were non-motile rods producing ellipsoidal endospores at a central position in non-swollen sporangia. Strain P4B T was strictly aerobic and catalase- and oxidase-positive. It was able to grow at NaCl concentrations of 0.5–12.5 % (w/v), with optimum growth occurring at 5–7.5 % (w/v) NaCl. The optimum temperature and pH for growth were 35 °C and pH 7.0. On the basis of 16S rRNA gene sequence analysis, strain P4B T was shown to belong to the phylum Firmicutes and shared highest similarity with Bacillus persepolensis HS136 T (97.1 %) and Bacillus salarius BH169 T (95.1 %). However, it shared only 91.3 % 16S rRNA gene sequence similarity with Bacillus subtilis subsp. subtilis DSM 10 T , indicating that strain P4B T might not be a member of the genus Bacillus . The DNA G+C content of this new isolate was 38.9 mol%. DNA–DNA hybridization experiments revealed a low level of relatedness between strain P4B T and B. persepolensis HS136 T (6 %). The major cellular fatty acids of strain P4B T were iso-C 15 : 0 and anteiso-C 15 : 0 , as for B. persepolensis HS136 T but in contrast to B. salarius DSM 16461 T and B. subtilis subsp. subtilis DSM 10 T . Its polar lipid pattern consisted of phosphatidylglycerol, an aminoglycolipid and an unknown phospholipid. This polar lipid profile was similar to that obtained for B. persepolensis DSM 21632 T but different from those of B. salarius DSM 16461 T and B. subtilis subsp. subtilis DSM 10 T . The isoprenoid quinones were MK-7 (88 %) and MK-8 (2 %). The peptidoglycan contained meso -diaminopimelic acid as the diagnostic diamino acid. All these features indicate placement of strain P4B T within the Firmicutes , closely related to B. persepolensis but with features clearly distinct from those of the genus Bacillus and other related genera. On the basis of these data, strain P4B T is considered to represent a novel species of a new genus, for which the name Alteribacillus bidgolensis gen. nov., sp. nov. is proposed. The type strain of Alteribacillus bidgolensis is P4B T ( = CCM 7963 T  = CECT 7998 T  = DSM 25260 T  = IBRC-M 10614 T  = KCTC 13821 T ). It is also suggested to transfer B. persepolensis to this new genus, as Alteribacillus persepolensis comb. nov. The type strain of Alteribacillus persepolensis is HS136 T ( = CCM 7595 T  = DSM 21632 T  = JCM 15720 T  = LMG 25222 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.034173-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
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  • 4
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    Bacillus persicus sp. nov., a halophilic bacterium from a hypersaline lake
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_4 ( 2013-04-01), p. 1229-1234
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_4 ( 2013-04-01), p. 1229-1234
    Abstract: A novel Gram-positive, slightly halophilic bacterium, designated strain B48 T , was isolated from soil around the hypersaline lake Aran-Bidgol in Iran and characterized taxonomically using a polyphasic approach. Cells of strain B48 T were non-motile rods and produced ellipsoidal endospores at a central or subterminal position in swollen sporangia. Strain B48 T was a strictly aerobic bacterium, catalase- and oxidase-positive. The strain was able to grow at NaCl concentrations of 0.5–10.0 % (w/v), with optimum growth occurring at 2.5 % (w/v) NaCl. The optimum temperature and pH for growth were 35 °C and pH 7.5–8.0, respectively. On the basis of 16S rRNA gene sequence analysis, strain B48 T was shown to belong to the genus Bacillus within the phylum Firmicutes and showed the closest phylogenetic similarity to the species Bacillus foraminis CV53 T (97.4 %) and Bacillus purgationiresistens DS22 T (96.9 %). The DNA G+C content of this new isolate was 40.1 mol%. The major cellular fatty acids of strain B48 T were iso-C 15 : 0 and anteiso-C 15 : 0 , and its polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, an aminophospholipid and two unknown phospholipids. The only quinone present was menaquinone 7 (MK-7). The peptidoglycan contained meso -diaminopimelic acid as the diagnostic diamino acid. All these features confirm the placement of isolate B48 T within the genus Bacillus . DNA–DNA hybridization experiments revealed a low level of relatedness between strain B48 T and Bacillus foraminis IBRC-M 10625 T (8.1 %). On the basis of polyphasic evidence from this study, a new species of the genus Bacillus , Bacillus persicus sp. nov., is proposed, with strain B48 T ( = IBRC-M 10115 T  = DSM 25386 T  = CECT 8001 T ) as the type strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.042689-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
    detail.hit.zdb_id: 215062-1
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  • 5
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    Limimonas halophila gen. nov., sp. nov., an extremely halophilic bacterium in the family Rhodospirillaceae
    Microbiology Society ; 2013
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 63, No. Pt_4 ( 2013-04-01), p. 1562-1567
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 63, No. Pt_4 ( 2013-04-01), p. 1562-1567
    Abstract: A novel, Gram-staining-negative, non-pigmented, rod-shaped, strictly aerobic, extremely halophilic bacterium, designated strain IA16 T , was isolated from the mud of the hypersaline Lake Aran-Bidgol, in Iran. Cells of strain IA16 T were not motile. Growth occurred with 2.5–5.2 M NaCl (optimum 3.4 M), at pH 6.0–8.0 (optimum pH 7.0) and at 30–50 °C (optimum 40 °C). Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain IA16 T belonged in the family Rhodospirillaceae and that its closest relatives were Rhodovibrio sodomensis DSM 9895 T (91.6 % sequence similarity), Rhodovibrio salinarum NCIMB 2243 T (91.2 %), Pelagibius litoralis CL-UU02 T (88.9 %) and Fodinicurvata sediminis YIM D82 T (88.7 %). The novel strain’s major cellular fatty acids were C 19 : 0 cyclo ω7 c and C 18 : 0 and its polar lipid profile comprised phosphatidylglycerol, diphosphatidylglycerol, four unidentified phospholipids, three unidentified aminolipids and two other unidentified lipids. The cells of strain IA16 T contained the ubiquinone Q-10. The G+C content of the novel strain’s genomic DNA was 67.0 mol%. The physiological, biochemical and phylogenetic differences between strain IA16 T and other previously described taxa indicate that the strain represents a novel species in a new genus within the family Rhodospirillaceae , for which the name Limimonas halophila gen. nov., sp. nov. is proposed. The type strain of Limimonas halophila is IA16 T ( = IBRC-M 10018 T  = DSM 25584 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.041236-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2013
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  • 6
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    Aquibacillus halophilus gen. nov., sp. nov., a moderately halophilic bacterium from a hypersaline lake, and reclassification of Virgibacillus koreensis as Aquibacillus koreensis comb. nov. and Virgibacillus albus as Aquibacillus albus comb. nov.
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_11 ( 2014-11-01), p. 3616-3623
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_11 ( 2014-11-01), p. 3616-3623
    Abstract: A novel Gram-stain-positive, moderately halophilic bacterium, designated strain B6B T , was isolated from the water of an Iranian hypersaline lake, Aran-Bidgol, and characterized taxonomically using a polyphasic approach. Cells of strain B6B T were rod-shaped, motile and produced ellipsoidal endospores in terminal positions in non-swollen sporangia. Strain B6B T was a strictly aerobic bacterium and catalase- and oxidase-positive. The strain was able to grow at NaCl concentrations of 0.5–20.0 % (w/v), with optimum growth occurring at 10.0 % (w/v) NaCl. The optimum temperature and pH for growth were 35 °C and pH 7.0. On the basis of 16S rRNA gene sequence analysis, strain B6B T was shown to belong to the phylum Firmicutes and its closest phylogenetic similarities were with the species Virgibacillus koreensis BH30097 T (97.5 %), Virgibacillus albus YIM 93624 T (97.4 %), Sediminibacillus halophilus EN8d T (96.8 %), Sediminibacillus albus NHBX5 T (96.6 %), Virgibacillus carmonensis LMG 20964 T (96.3 %) and Paraliobacillus quinghaiensis YIM-C158 T (96.0 %), respectively. Phylogenetic analysis revealed that strain B6B T , along with V. koreensis BH30097 T and V. albus YIM 93624 T , clustered in a separate clade in the family Bacillaceae . The DNA G+C content of the novel isolate was 35.8 mol%. DNA–DNA hybridization experiments revealed low levels of relatedness between strain B6B T and V. koreensis BH30097 T (13 %) and V. albus YIM 93624 T (33 %). The major cellular fatty acid of strain B6B T was anteiso-C 15 : 0 (75.1 %) and its polar lipid pattern consisted of phosphatidylglycerol, diphosphatidylglycerol, an unknown phospholipid and an unknown glycolipid. The isoprenoid quinones were MK-7 (90 %) and MK-6 (3 %). The peptidoglycan contained meso -diaminopimelic acid as the diagnostic diamino acid. All of these features support the placement of isolate B6B T within the phylum Firmicutes . It is closely related to V. koreensis and V. albus , but with features that clearly distinguish it from species of the genus Virgibacillus or of other related genera. On the basis of the polyphasic evidence derived in this study, we propose that strain B6B T be placed within a new genus, as Aquibacillus halophilus gen. nov., sp. nov., with B6B T as the type strain ( = IBRC-M 10775 T  = KCTC 13828 T ). We also propose that V. koreensis and V. albus should be transferred to this new genus and be named Aquibacillus koreensis comb. nov. and Aquibacillus albus comb. nov., respectively. The type strain of Aquibacillus koreensis comb. nov. is BH30097 T ( = KCTC 3823 T  = IBRC-M 10657 T  = JCM 12387 T ) and the type strain of Aquibacillus albus comb. nov. is YIM 93624 T ( = DSM 23711 T  = IBRC-M 10798 T  = JCM 17364 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.065375-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
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  • 7
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    Aliicoccus persicus gen. nov., sp. nov., a halophilic member of the Firmicutes isolated from a hypersaline lake
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_6 ( 2014-06-01), p. 1964-1969
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_6 ( 2014-06-01), p. 1964-1969
    Abstract: A novel Gram-staining-positive, moderately halophilic bacterium, designated strain A76 T , was isolated from a brine sample of the hypersaline lake Aran-Bidgol in Iran. Cells were strictly aerobic, coccus-shaped, non-motile, non-sporulating, and catalase- and oxidase-positive. Strain A76 T grew between pH 7.0 and 10.0 (optimal growth at pH 8.0), between 20 and 45 °C (optimal growth at 35 °C) and at salinities of 0.5 to 12.5 % (w/v) NaCl (optimal growth at 7.5 %, w/v, NaCl). On the basis of 16S rRNA gene sequence analysis, strain A76 T was shown to belong to the phylum Firmicutes with sequence similarities of 94.1, 93.1 and 91.1 %, to the type species of the genera Jeotgalicoccus , Salinicoccus and Nosocomiicoccus , respectively. The DNA G+C content of this new isolate was 38.8 mol%. The major cellular fatty acids of strain A76 T were anteiso-C 15 : 0 and iso-C 15 : 0 , and its polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, a glycolipid, an unknown lipid and two unknown phospholipids. The isoprenoid quinones were MK-6 (94 %), MK-5 (3 %) and MK-7 (3 %). The amino acid constituents of the cell wall were Lys, Asp, Gly, Glu and Ala. The physiological, biochemical and phylogenetic differences between strain A76 T and type strains of taxa with validly published names suggest that this strain represents a novel species in a novel genus within the family Staphylococcaceae , for which the name Aliicoccus persicus gen. nov., sp. nov. is proposed. The type strain of Aliicoccus persicus is strain A76 T ( = CECT 8508 T  = DSM 28306 T  = IBRC-M 10081 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.058545-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
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  • 8
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    Salinithrix halophila gen. nov., sp. nov., a halophilic bacterium in the family Thermoactinomycetaceae
    Microbiology Society ; 2014
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 64, No. Pt_12 ( 2014-12-01), p. 4115-4119
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 64, No. Pt_12 ( 2014-12-01), p. 4115-4119
    Abstract: A halophilic actinomycete, strain R4S8 T , was isolated from soil of Inche-Broun hypersaline wetland in the north of Iran. The isolate grew aerobically at temperatures of 30–50 °C (optimum 40 °C), pH 6–10 (optimum pH 7.0) and in the presence of 1–15 % (w/v) NaCl (optimum 3–5 %). It formed short and straight to moderately flexuous aerial mycelium without motile elements. The cell wall of strain R4S8 T contained meso -diaminopimelic acid as the diamino acid without any diagnostic sugars. The polar lipid pattern consisted of phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylserine, phosphatidylmonomethylethanolamine two unknown phospholipids and one unknown aminophospholipid. It synthesized anteiso-C 15 : 0 (44.8 %), iso-C 15 : 0 (28.8 %) and iso-C 14 : 0 (8.5 %) as major fatty acids. MK-6 was the predominant respiratory quinone. The G+C content of the genomic DNA was 52.6 mol%. Phylogenetic analysis based on 16S rRNA gene sequences revealed that strain R4S8 T belongs to the family Thermoactinomycetaceae and showed the closest 16S rRNA gene sequence similarity with Desmospora activa IMMIB L-1269 T (95.5 %) and Marininema mesophilum SCSIO 10219 T (95.3 %). On the basis of phylogenetic analysis and phenotypic characteristics, strain R4S8 T represents a novel species in a new genus within the family Thermoactinomycetaceae , for which the name Salinithrix halophila gen. nov., sp. nov. is proposed. The type strain of the type species is R4S8 T ( = IBRC-M 10813 T  = CECT 8506 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.064766-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
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  • 9
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    Nocardia halotolerans sp. nov., a halotolerant actinomycete isolated from saline soil
    Microbiology Society ; 2015
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 65, No. Pt_9 ( 2015-09-01), p. 3148-3154
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 65, No. Pt_9 ( 2015-09-01), p. 3148-3154
    Abstract: A novel halotolerant actinomycete, strain Chem15 T , was isolated from soil around Inche-Broun hypersaline wetland; its taxonomic position was determined based on a polyphasic approach. Strain Chem15 T was strictly aerobic and tolerated NaCl up to 12.5 %. The optimum temperature and pH for growth were 28–30 °C and pH 7.0–7.5, respectively. The cell wall of strain Chem15 T contained meso -diaminopimelic acid as diamino acid and galactose, arabinose and ribose as whole-cell sugars. The major phospholipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannosides. The cellular fatty acids profile consisted of C 16 : 0 , iso-C 18 : 0 , C 18 : 0 10-methyl and C 18 : 1 ω9 c , and the major respiratory quinone was MK-8(H 4cycl ). The G+C content of the genomic DNA was 68.0 mol%. The novel strain constituted a distinct phyletic line within the genus Nocardia , based on 16S rRNA gene sequence analysis, and was closely associated with Nocardia sungurluensis DSM 45714 T and Nocardia alba DSM 44684 T (98.2 and 98.1 % 16S rRNA gene sequence similarity, respectively). However DNA–DNA relatedness and phenotypic data demonstrated that strain Chem15 T was clearly different from closely related species of the genus Nocardia . It is concluded that the organism should be classified as a representative of a novel species of the genus Nocardia , for which the name Nocardia halotolerans sp. nov. is proposed. The type strain is Chem15 T ( = IBRC-M 10490 T  = LMG 28544 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.000394
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
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  • 10
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    Salininema proteolyticum gen. nov., sp. nov., a halophilic rare actinomycete isolated from wetland soil, and emended description of the family Glycomycetaceae
    Microbiology Society ; 2015
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 65, No. Pt_10 ( 2015-10-01), p. 3727-3733
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 65, No. Pt_10 ( 2015-10-01), p. 3727-3733
    Abstract: A Gram-stain-positive actinobacterial strain, Miq-4 T , was isolated from soil around Meighan wetland in the centre of Iran. Strain Miq-4 T was strictly aerobic, catalase- and oxidase-positive. The isolate grew in the presence of 3–15 % (w/v) NaCl, at 20–40 °C and pH 6.0–11.0. The optimum NaCl, temperature and pH for growth were 7.0 %, 30 °C and 7.0–8.5, respectively. The cell wall of strain Miq-4 T contained meso -diaminopimelic acid as the diamino acid and glucose and ribose as the whole-cell sugars. The polar lipid pattern consisted of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol and phosphatidylinositol mannoside. Strain Miq-4 T synthesized cellular fatty acids of anteiso- and iso-branched types, including anteiso-C 17 : 0 , anteiso- C 15 : 0 and iso-C 16 : 0 , and the major respiratory quinone was MK-9(H 4 ). The G+C content of the genomic DNA was 68.2 mol%. Phylogenetic analysis based on 16S rRNA gene sequences and characteristic patterns of 16S rRNA gene signature nucleotides revealed that strain Miq-4 T belongs to the family Glycomycetaceae and showed the closest phylogenetic similarity with Haloglycomyces albus YIM 92370 T (94.1 % 16S rRNA gene sequence similarity). On the basis of phylogenetic analysis and phenotypic and chemotaxonomic characteristics, strain Miq-4 T represents a novel species of a new genus in the family Glycomycetaceae, for which the name Salininema proteoliyticum gen. nov., sp. nov. is proposed. The type strain of the type species is Miq-4 T ( = IBRC-M 10908 T  = LMG 28391 T ). An emended description of the family Glycomycetaceae is also proposed in order to include features of the new genus.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.000483
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
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