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  • 1
    In: BMC Cancer, Springer Science and Business Media LLC, Vol. 18, No. 1 ( 2018-12)
    Type of Medium: Online Resource
    ISSN: 1471-2407
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
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  • 2
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 77, No. 13_Supplement ( 2017-07-01), p. 5375-5375
    Abstract: BACKGROUND: The serrated colorectal neoplasia pathway describes the progression of morphologically serrated polyps to cancer and accounts for approximately one third of all colorectal cancer cases. Human serrated polyps are characterised by activating mutation of the BRAF oncogene and widespread DNA methylation changes termed the CpG Island Methylator Phenotype. A causative versus synergistic relationship between BRAF mutation and this methylator phenotype has not been determined. We aimed to address this by developing a murine model for serrated neoplasia driven by BRAF mutation. METHODS: BrafV637E conditionally active mice were crossed with intestine-specific, inducible Villin-CreERT2 mice to direct the BRAF mutation to the intestine at 2 weeks of age. The proximal ilieum or proximal colon were sampled at defined time points including 10 days, 10 weeks, 5 months, 8 months, 10 months, 12 months and 14 months. Macroscopic lesions larger than 10mm were bisected for molecular and histological assessment. The entire remaining intestine was fixed and examined histologically. DNA methylation was investigated for 94 genes known to by methylated in colorectal cancer using Epitect MethylII Complete PCR Arrays (Qiagen). RESULTS: Braf mutant mice displayed histologic changes analogous to the human serrated neoplasia pathway. Extensive intestinal hyperplasia developed by 10 days post induction of the BRAF mutation. By 10 weeks, 50% mice had developed areas of crypt dilation reminiscent of human sessile serrated adenomas. By 8 months, the majority of mice had murine serrated adenomas with dysplasia and invasive cancer developed in 40% of mice by 14 months, one of which metastasised to the liver. Compared to age-matched control mice, Braf mutant mice showed significant, gene-specific increases in DNA methylation from 5 months (p & lt;0.0001). CONCLUSIONS: Using an in vivo model we observed the temporal accumulation of DNA methylation changes in hyperplastic epithelium in direct response to mutation of the BRAF oncogene. This murine model morphologically and molecularly recapitulates the human serrated neoplasia pathway and establishes a causative role for BRAF mutation in establishing a methylator phenotype. Note: This abstract was not presented at the meeting. Citation Format: Vicki Whitehall, Catherine Bond, Cheng Liu, Futoshi Kawamata, Diane McKeone, Saara Jamieson, Sally Pearson, Susan Woods, Tamsin Lannagan, Lochlan Fennell, Winnie Fernando, Mark Bettington, Daniel Worthley, Barbara Leggett. Oncogenic BRAF mutation induces widespread DNA hypermethylation in a murine model for human serrated colorectal neoplasia [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 5375. doi:10.1158/1538-7445.AM2017-5375
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2017
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  • 3
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 79, No. 13_Supplement ( 2019-07-01), p. 479-479
    Abstract: BACKGROUND AND AIMS: Colorectal cancer is an epigenetically heterogeneous disease, however the extent and spectrum of the CpG Island Methylator Phenotype (CIMP) is not clear.METHODS: Genome scale methylation and transcript expression were measured using the Illumina HM450 DNA methylation and HT12 V3 expression microarrays in 216 unselected colorectal cancers. Mutations in epigenetic regulators were assessed using CIMP-classified Cancer Genome Atlas exomes.RESULTS: CIMP-High cancers dichotomised into CIMP-H1 and CIMP-H2 based on methylation profile, which was supported by over-representation of BRAF (74%, P & lt;0.0001) or KRAS (55%, P & lt;0.0001) mutation. Congruent with increasing methylation, there was a stepwise increase in patient age from 62 years in the CIMP-Negative subgroup to 75 years in the CIMP-H1 subgroup (P & lt;0.0001). CIMP-H1 were predominantly comprised of consensus molecular subtype 1 (CMS1) cancers (70%) whilst CMS3 was over-represented in the CIMP-H2 subgroup (55%). PRC2-marked loci were subjected to significant gene body methylation in CIMP cancers (P & lt;1.6x10-78). We identified oncogenes susceptible to gene body methylation and Wnt pathway antagonists resistant to gene body methylation. CIMP cluster specific mutations were observed for in chromatin remodeling genes, such as in the SWI/SNF and NuRD complexes, suggesting synthetic lethality.CONCLUSION: There are five clinically and molecularly distinct subgroups of colorectal cancer. We show a striking association between CIMP and age, gender and tumor location and identify an unidentified role for gene body methylation in progression of serrated neoplasia. These data support our recent findings that CIMP is uncommon in young patients and that BRAF mutant polyps in young patients may have limited potential for malignant progression. Citation Format: Vicki L. Whitehall, Lochlan Fennell, Troy Dumenil, Gunter Hartel, Katia Nones, Catherine Bond, Diane McKeone, Ann-Marie Patch, Stephen Kazakoff, John Pearson, Nicola Waddell, Pratyaksha Wirapati, Paul Lochead, Shuji Ogino, Sabine Tejpar, Barbara Leggett. BRAF and KRAS mutation define distinct subtypes of the CpG island methylator phenotype in colorectal cancers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2019; 2019 Mar 29-Apr 3; Atlanta, GA. Philadelphia (PA): AACR; Cancer Res 2019;79(13 Suppl):Abstract nr 479.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2019
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  • 4
    In: Gut, BMJ, Vol. 71, No. 6 ( 2022-06), p. 1127-1140
    Abstract: Sessile serrated lesions (SSLs) are common across the age spectrum, but the BRAF mutant cancers arising occur predominantly in the elderly. Aberrant DNA methylation is uncommon in SSL from young patients. Here, we interrogate the role of ageing and DNA methylation in SSL initiation and progression. Design We used an inducible model of Braf mutation to direct recombination of the oncogenic Braf V637E allele to the murine intestine. BRAF mutation was activated after periods of ageing, and tissue was assessed for histological, DNA methylation and gene expression changes thereafter. We also investigated DNA methylation alterations in human SSLs. Results Inducing Braf mutation in aged mice was associated with a 10-fold relative risk of serrated lesions compared with young mice. There were extensive differences in age-associated DNA methylation between animals induced at 9 months versus wean, with relatively little differential Braf- specific methylation. DNA methylation at WNT pathway genes scales with age and Braf mutation accelerated age-associated DNA methylation. In human SSLs, increased epigenetic age was associated with high-risk serrated colorectal neoplasia. Conclusions SSLs arising in the aged intestine are at a significantly higher risk of spontaneous neoplastic progression. These findings provide support for a new conceptual model for serrated colorectal carcinogenesis, whereby risk of Braf- induced neoplastic transformation is dependent on age and may be related to age-associated molecular alterations that accumulate in the ageing intestine, including DNA methylation. This may have implications for surveillance and chemopreventive strategies targeting the epigenome.
    Type of Medium: Online Resource
    ISSN: 0017-5749 , 1468-3288
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    Language: English
    Publisher: BMJ
    Publication Date: 2022
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  • 5
    In: Cancers, MDPI AG, Vol. 12, No. 5 ( 2020-05-06), p. 1171-
    Abstract: Background: WNT activation is a hallmark of colorectal cancer. BRAF mutation is present in 15% of colorectal cancers, and the role of mutations in WNT signaling regulators in this context is unclear. Here, we evaluate the mutational landscape of WNT signaling regulators in BRAF mutant cancers. Methods: we performed exome-sequencing on 24 BRAF mutant colorectal cancers and analyzed these data in combination with 175 publicly available BRAF mutant colorectal cancer exomes. We assessed the somatic mutational landscape of WNT signaling regulators, and performed hotspot and driver mutation analyses to identify potential drivers of WNT signaling. The effects of Apc and Braf mutation were modelled, in vivo, using the Apcmin/+ and BrafV637/Villin-CreERT2/+ mouse, respectively. Results: RNF43 was the most frequently mutated WNT signaling regulator (41%). Mutations in the beta-catenin destruction complex occurred in 48% of cancers. Hotspot analyses identified potential cancer driver genes in the WNT signaling cascade, including MEN1, GNG12 and WNT16. Truncating APC mutation was identified in 20.8% of cancers. Truncating APC mutation was associated with early age at diagnosis (p 〈 2 × 10−5), advanced stage (p 〈 0.01), and poor survival (p = 0.026). Apcmin/+/BrafV637 animals had more numerous and larger SI and colonic lesions (p 〈 0.0001 and p 〈 0.05, respectively), and a markedly reduced survival (median survival: 3.2 months, p = 8.8 × 10−21), compared to animals with Apc or Braf mutation alone. Conclusions: the WNT signaling axis is frequently mutated in BRAF mutant colorectal cancers. WNT16 and MEN1 may be novel drivers of aberrant WNT signaling in colorectal cancer. Co-mutation of BRAF and APC generates an extremely aggressive neoplastic phenotype that is associated with poor patient outcome.
    Type of Medium: Online Resource
    ISSN: 2072-6694
    Language: English
    Publisher: MDPI AG
    Publication Date: 2020
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  • 6
    In: Modern Pathology, Elsevier BV, Vol. 31, No. 3 ( 2018-03), p. 495-504
    Type of Medium: Online Resource
    ISSN: 0893-3952
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2018
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  • 7
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2016
    In:  Cancer Research Vol. 76, No. 14_Supplement ( 2016-07-15), p. 660-660
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 76, No. 14_Supplement ( 2016-07-15), p. 660-660
    Abstract: Background. The majority of conventional colorectal adenomas are initiated by activation of the Wnt signal, whilst activation of the MAPK pathway is associated with progression to cancer. In contrast, sessile serrated adenomas are initiated by activation of the MAPK signaling pathway due to mutation of the BRAF oncogene, whilst the Wnt pathway is activated at the transition to dysplasia. We hypothesised that whilst both the Wnt and MAPK pathways play key roles in colorectal tumorigenesis, the order in which these signaling pathways are activated would determine the morphology of the lesion arising. Methods. To test this hypothesis, we utilised a conditional BRAF mutant mouse model crossed with an inducible Cre driven by the murine Villin gene promoter, to restrict Cre expression and induction of the BRAF mutation to the intestine. The MAPK pathway was activated two weeks after birth, whilst activation of the Wnt signal was achieved using APCMin mice or the intestinal carcinogen azoxymethane. Morphology and number of lesions was confirmed by histologically examination. Nuclear β-catenin immunostaining provided a surrogate for activation of the Wnt signal. Results. Induction of the BRAF mutation resulted in the rapid and sustained development of widespread intestinal hyperplasia. Murine serrated adenomas (mSA) mimicking the morphology of human traditional serrated adenomas were observed by 5 months and by 10 months 8/18 (44.4%) mice had developed mSA, primarily in the duodenum. Activation of the Wnt pathway using azoxymethane dramatically accelerated the serrated phenotype in both the small intestine (2.9 mSA per mouse, P & lt;0.01) and colon (3.1 mSA per mouse, P & lt;0.05) by 3 months. The MAPK and Wnt pathways also synergized in APCMin mice, increasing the average number of conventional adenomas per mouse from 2.1 to 78.8 (P & lt;0.001). Conclusion. The rapid induction of hyperplasia and exclusive development of serrated lesions demonstrates that BRAF mutation is a key molecular event underlying initiation of serrated neoplasia. Importantly, we have demonstrated that activation of the MAPK pathway through BRAF mutation is sufficient for commitment to the serrated pathway and that whilst subsequent activation of the Wnt signal can accelerate tumorigenesis, it is not sufficient to override the existing serrated morphology. Citation Format: Vicki Whitehall, Winnie Fernando, Diane McKeone, Mark Bettington, Sally Pearson, Catherine Bond, Barbara Leggett. Modelling conventional and serrated colorectal tumorigenesis by altering the Wnt and MAPK signaling pathways. [abstract]. In: Proceedings of the 107th Annual Meeting of the American Association for Cancer Research; 2016 Apr 16-20; New Orleans, LA. Philadelphia (PA): AACR; Cancer Res 2016;76(14 Suppl):Abstract nr 660.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2016
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  • 8
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 77, No. 3_Supplement ( 2017-02-01), p. PR04-PR04
    Abstract: The WNT and MAPK signaling pathways are central to colorectal homeostasis. Mutation of the APC tumor suppressor gene activates the WNT pathway to initiate most conventional adenomas. By contrast, oncogenic BRAF mutation initiates development of sessile serrated adenomas (SSA) via activation of the MAPK pathway. The purpose of this study was to investigate the frequency, timing and mechanism of WNT pathway activation in serrated colorectal neoplasia. Methods: The WNT pathway was examined in a range of colorectal polyp and cancer subtypes. Aberrant nuclear immuno-localization of β-catenin was used as a surrogate for WNT pathway activation, compared to the normal membranous staining pattern. The entire coding region of the APC gene was sequenced using a custom enrichment panel that included 242 primer pairs (GeneRead DNAseq Targeted Panel, Qiagen) and the constructed library was sequenced using Illumina's HT TruSeq Kit. As another mechanism of activating WNT, mutations were also assessed in the E3 ubiquitin ligase genes RNF43 and ZNRF3 using Sanger sequencing. To test the interaction of the WNT and MAPK pathways in vivo, a conditional BRAF mutant mouse model was crossed with an inducible Cre driven by the murine Villin gene promoter, to restrict Cre expression and induction of the BRAF mutation to the intestine at 2 weeks. The chemical carcinogen azoxymethane was administered weekly for 6 weeks to activate the WNT pathway from 3 weeks of age. The potential therapeutic implication of targeting these pathways was tested in vitro using the porcupine inhibitor LGK974 and MEK inhibitor PD0325901. Results: The majority of conventional pathway polyps and cancers had nuclear localization of β-catenin (22/28, 79% adenomas and 36/42, 86% BRAF wildtype cancers) and mutations in APC (17/20, 85% adenomas and 19/30, 63% BRAF wild type cancers). Sessile serrated adenomas infrequently showed nuclear staining of β-catenin and 0/20 SSA had mutations. By contrast, the WNT signal was increased in the dysplastic component of SSA with a focus of dysplasia (76/137, 55%), however APC mutations were uncommon (3/20, 15%). Similarly, BRAF mutant cancers had nuclear β-catenin in 36/92 (39%) cancers compared to APC mutation in only 9/80 (11%) samples. This did not significantly differ when samples were stratified by microsatellite instability status. RNF43 and ZNRF3 were commonly mutated in BRAF mutant / microsatellite unstable cancers (47/54, 87% and 16/54, 30%, respectively) as well as BRAF mutant / microsatellite stable cancers (8/33, 24% and 5/33, 15%) compared to only 3/79 (4%) RNF43 mutations and 0/27 ZNRF3 mutations in BRAF wildtype cancers. This was accompanied by lower transcript expression for both RNF43 and ZNRF3 in BRAF mutant compared to BRAF wildtype cancers (P & lt;0.0001). We further demonstrated the importance of the WNT pathway in progression of serrated neoplasia by administering azoxymethane to mice with BRAF mutant-induced intestinal hyperplasia. This accelerated the serrated phenotype from 0.6 polyps per mouse to 5.9 per mouse (P & lt;0.001). These all showed typical murine serrated adenoma morphology. To investigate potential therapeutic implications we treated colorectal cancer cell lines with the porcupine inhibitor LGK974 and showed a 50% reduction in growth only in RNF43 and/or ZNRF3 mutant cell lines. In the BRAF / RNF43 / ZNRF3 mutant cell line RKO, LGK974 synergized with MEK inhibition to dramatically reduce growth by approximately 95%. Conclusions: The WNT pathway is commonly activated in serrated neoplasia at the transition to dysplasia. This is not due APC mutation but rather mutation of the upstream RNF43 and/or ZNRF43 genes or other WNT pathway targets. The combination of WNT and MAPK pathway inhibition offers potential for improving therapy for patients with serrated pathway cancers. This abstract is also being presented as Poster A21. Citation Format: Vicki Whitehall, Jennifer Borowsky, Catherine Bond, Mark Bettington, Sally-Ann Pearson, Murugan Kalimutho, John Liu, Troy Dumenil, Diane McKeone, Saara Jamieson, Winnie Fernando, Lochlan Fennell, Andrew Clouston, Christophe Rosty, Ian Brown, Neal Walker, Barbara Leggett. Wnt and MAPK pathway activation in conventional and serrated colorectal neoplasia. [abstract]. In: Proceedings of the AACR Special Conference on Colorectal Cancer: From Initiation to Outcomes; 2016 Sep 17-20; Tampa, FL. Philadelphia (PA): AACR; Cancer Res 2017;77(3 Suppl):Abstract nr PR04.
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
    RVK:
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2017
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  • 9
    Online Resource
    Online Resource
    American Association for Cancer Research (AACR) ; 2015
    In:  Cancer Research Vol. 75, No. 15_Supplement ( 2015-08-01), p. 2076-2076
    In: Cancer Research, American Association for Cancer Research (AACR), Vol. 75, No. 15_Supplement ( 2015-08-01), p. 2076-2076
    Abstract: BACKGROUND. The Wnt signalling pathway is altered in the majority of colorectal cancers by APC mutation. Cancers arising via the serrated neoplasia pathway are hallmarked by BRAF mutation and microsatellite instability (MSI), but do not commonly mutate APC. RNF43 and ZNRF3 are transmembrane E3 ubiquitin ligases that are localised to intestinal stem cells where they cooperate to suppress Wnt signaling. Mutation of these genes may be an alternate mechanism to bypass the Wnt signal. RNF43 / ZNRF3 double knockout mice develop intestinal neoplasia and germline mutation of RNF43 has been reported in serrated polyposis. We therefore hypothesised that somatic mutation of RNF43 and/or ZNRF3 would be important in the development of serrated colorectal neoplasia. METHODS. RNF43 and ZNRF3 mutations were assessed in a pilot series of 24 BRAF mutant cancers representing the serrated neoplasia pathway and 10 control BRAF wild type cancers using Agilent V4+UTR whole exome capture followed by sequencing on an Illumina HiSeq 2000. An extended cohort of 80 BRAF mutant cancers (48 MSI, 32 MSS) and 67 BRAF wild type cancers was examined by Sanger sequencing. The frequency of a common hotspot mutation in RNF43 was validated in a second series of 42 BRAF mutant and 22 BRAF wild type colorectal cancers. Transcript expression for RNF43 and ZNRF3 was assayed using Illumina HT-12v4 BeadChip expression arrays in 29 BRAF mutant cancers, 187 BRAF wild type cancers and a subset of 32 matched normal mucosa samples. RESULTS. RNF43 mutations were detected in whole exome sequencing data in 11/24 BRAF mutant but no BRAF wild type cancers (P & lt;0.01). Three of these 11 cancers also had a ZNRF3 mutation. RNF43 and ZNRF3 mutations were also frequently concordant in a larger series of cancers. RNF43 mutations were associated with MSI (P & lt;0.0001), being identified in 43/48 BRAF mutant / MSI cancers (90%), 6/32 (19%) BRAF mutant / MSS cancers and 6/44 BRAF wild type / MSS cancers (14%). The high frequency of a G7 frameshift mutation at position 659 of RNF43 was similarly present in 25/33 (76%) BRAF mutant MSI cancers but only 1/34 MSS cancers from a second, validation cohort. Transcript levels of RNF43 and ZNRF3 were positively correlated (r2 0.47, P & lt;0.0001) and were significantly lower in BRAF mutant compared to BRAF wild type cancers (P & lt;0.0001). CONCLUSIONS. RNF43 is a frequent mutational target in serrated neoplasia. The high frequency of both substitution and frameshift mutations support the functional relevance of these alterations. We hypothesise that RNF43 is mutated as an alternative to APC in serrated lesions as a mechanism of bypassing control of the Wnt signal. These data support our current model of serrated neoplasia whereby BRAF is mutated early in serrated polyp development and RNF43 is subsequently mutated to remove constraints on the Wnt signal and allow progression to cancer. Citation Format: Vicki L. Whitehall, Catherine Bond, Diane McKeone, Jonathan Ellis, Mark Bettington, Sally Pearson, Barbara Leggett. RNF43 is a frequent mutational target in serrated colorectal neoplasia. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2076. doi:10.1158/1538-7445.AM2015-2076
    Type of Medium: Online Resource
    ISSN: 0008-5472 , 1538-7445
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    Language: English
    Publisher: American Association for Cancer Research (AACR)
    Publication Date: 2015
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  • 10
    In: Cellular and Molecular Gastroenterology and Hepatology, Elsevier BV, Vol. 8, No. 2 ( 2019), p. 269-290
    Type of Medium: Online Resource
    ISSN: 2352-345X
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2019
    detail.hit.zdb_id: 2819778-1
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