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  • 1
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 377, No. 6607 ( 2022-08-12), p. 728-735
    Abstract: Monoclonal antibodies from COVID-19 convalescent individuals broadly neutralize coronaviruses by targeting the viral spike protein fusion peptide.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
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  • 2
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2018
    In:  Science Vol. 361, No. 6404 ( 2018-08-24), p. 782-786
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 361, No. 6404 ( 2018-08-24), p. 782-786
    Abstract: Quantum states of quasiparticles in solids are dictated by symmetry. We have experimentally demonstrated quantum states of Dirac electrons in a two-dimensional quasicrystal without translational symmetry. A dodecagonal quasicrystalline order was realized by epitaxial growth of twisted bilayer graphene rotated exactly 30°. We grew the graphene quasicrystal up to a millimeter scale on a silicon carbide surface while maintaining the single rotation angle over an entire sample and successfully isolated the quasicrystal from a substrate, demonstrating its structural and chemical stability under ambient conditions. Multiple Dirac cones replicated with the 12-fold rotational symmetry were observed in angle-resolved photoemission spectra, which revealed anomalous strong interlayer coupling with quasi-periodicity. Our study provides a way to explore physical properties of relativistic fermions with controllable quasicrystalline orders.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2018
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  • 3
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2012
    In:  Proceedings of the National Academy of Sciences Vol. 109, No. 11 ( 2012-03-13)
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 11 ( 2012-03-13)
    Abstract: Our work has established a member of the AARS family as a unique, natural defender against tumor growth and development, offering hope for new therapies against specific cancers. For example, 〉 30,000 new cases of renal cell carcinoma (RCC) are recorded in the United States each year. Evidence points to a role for components associated with GRS-dependent tumor suppression—namely, ERK signaling and CDH6—in RCC. ERK signaling has also been implicated in small cell lung carcinoma. In general, GRS-based therapies could act against cancers in which CDH6 is highly expressed and the ERK pathway is active. Having shown such a role in the cell setting, we next looked for such a role in vivo, examining the consequences of administering GRS to animals that had ERK-signaling–dependent tumors. For this experiment, we chose mice that had developed aggressive cancers. We injected GRS not into the tumor itself, but instead under the skin at a peripheral site. Here, GRS could ultimately enter the serum and reach the tumor through the circulatory system. We felt that this approach would most closely mimic the situation in which GRS in the serum acts as part of a natural defense. Strikingly, this GRS administration strongly suppressed the growth and spread of the tumor and, in fact, resulted in tumor regression. To offer further evidence for the role of GRS in suppressing ERK signaling and causing tumor cell death, we used antibodies to create an artificial shield around CDH6, blocking the ability of GRS to stick to tumor cells. As expected, this shield prevented GRS from inhibiting signaling from ERK. The result shows GRS's role as a natural defense against those tumor cells that require ERK signaling. In our experiments with whole cells in the laboratory, we found that GRS is secreted from macrophages—a type of immune cell that engulfs foreign invaders. Secretion is stimulated by a molecule—called Fas ligand—that is released from tumor cells. Thus, the tumor cell itself plays a role in GRS's appearance in the serum. These tumor cells become malignant, because they harbor a cancer-causing gene called the ras oncogene, which gives instructions for making the ras protein. The ras protein's ability to cause tumors depends on the action of another cell component called ERK. We found that, once released, GRS was able to stick to the surface of the Fas-secreting tumor cells through a cancer-specific partner named cadherin (CDH)6 (or K-cadherin). The union of GRS with CDH6 set off a cascade of events that, ultimately, inhibited signaling from ERK. Without signaling from ERK, growth and proliferation of the tumor cells was arrested, and cell death resulted ( Fig. P1 ). With these considerations in mind, we decided to investigate the functions of AARSs, starting with examples of these synthetases that are present in a physiological setting where no protein synthesis occurs. We looked more closely at those synthetases that circulate in human serum (a component of blood containing no blood cells or clotting factors). Curiously, ∼30% of all autoimmune patients, including those suffering from inflammatory and lung diseases, have autoantibodies directed against one of seven AARSs ( 3 , 4 ). In general, antibodies are immune molecules that usually attach to specific invaders. Autoantibodies are antibodies that attach to the organism's own molecules. Glycyl-tRNA synthetase (GRS) is one of the AARSs targeted by these autoantibodies. Particularly interesting was the observation that autoantibodies directed against GRS were also detected in the serum of patients with cancer ( 5 ). These results led us to investigate the possibility of a role for GRS in the cancer microenvironment. A group of 20 enzymes called aminoacyl-tRNA synthetases (AARSs) forms an essential component of all living cells, helping to translate information encrypted in genes. This “translation” is done during protein synthesis within the cell. Interestingly, over the last 12 y, researchers have discovered activities for these enzymes that are not associated with protein synthesis ( 2 , 3 ), including the regulation of inflammatory responses, the development of blood vessels, and diverse other functions. On the basis of these findings, we now believe that perturbations in these functions may help explain the connections between AARSs and many diseases. The causes of cancerous tumors and the mechanisms behind immune system responses to them have been extensively studied. Still, we have limited understanding of the complete arsenal of natural defense systems against tumors ( 1 ). In this study, we made the surprising observation that a conventional component of the body's protein-synthesis machinery, not thought to have a connection to tumor defense, in fact plays a role in the suppression of specific cancers. This function was demonstrated in laboratory experiments on cells and separately in vivo in animals that bore tumors. The results may form the basis for potential cancer therapeutics.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
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  • 4
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2003
    In:  Science Vol. 300, No. 5619 ( 2003-04-25), p. 653-656
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 300, No. 5619 ( 2003-04-25), p. 653-656
    Abstract: The active-site cysteine of peroxiredoxins is selectively oxidized to cysteine sulfinic acid during catalysis, which leads to inactivation of peroxidase activity. This oxidation was thought to be irreversible. However, by metabolic labeling of mammalian cells with 35 S, we show that the sulfinic form of peroxiredoxin I, produced during the exposure of cells to H 2 O 2 , is rapidly reduced to the catalytically active thiol form. The mammalian cells' ability to reduce protein sulfinic acid might serve as a mechanism to repair oxidatively damaged proteins or represent a new type of cyclic modification by which the function of various proteins is regulated.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2003
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  • 5
    In: The Journal of Neuroscience, Society for Neuroscience, Vol. 38, No. 26 ( 2018-06-27), p. 5872-5887
    Type of Medium: Online Resource
    ISSN: 0270-6474 , 1529-2401
    Language: English
    Publisher: Society for Neuroscience
    Publication Date: 2018
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  • 6
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 107, No. 51 ( 2010-12-21), p. 22032-22037
    Abstract: The genome of soybean ( Glycine max ), a commercially important crop, has recently been sequenced and is one of six crop species to have been sequenced. Here we report the genome sequence of G. soja , the undomesticated ancestor of G. max (in particular, G. soja var. IT182932). The 48.8-Gb Illumina Genome Analyzer (Illumina-GA) short DNA reads were aligned to the G. max reference genome and a consensus was determined for G. soja . This consensus sequence spanned 915.4 Mb, representing a coverage of 97.65% of the G. max published genome sequence and an average mapping depth of 43-fold. The nucleotide sequence of the G. soja genome, which contains 2.5 Mb of substituted bases and 406 kb of small insertions/deletions relative to G. max , is ∼0.31% different from that of G. max . In addition to the mapped 915.4-Mb consensus sequence, 32.4 Mb of large deletions and 8.3 Mb of novel sequence contigs in the G. soja genome were also detected. Nucleotide variants of G. soja versus G. max confirmed by Roche Genome Sequencer FLX sequencing showed a 99.99% concordance in single-nucleotide polymorphism and a 98.82% agreement in insertion/deletion calls on Illumina-GA reads. Data presented in this study suggest that the G. soja / G. max complex may be at least 0.27 million y old, appearing before the relatively recent event of domestication (6,000∼9,000 y ago). This suggests that soybean domestication is complicated and that more in-depth study of population genetics is needed. In any case, genome comparison of domesticated and undomesticated forms of soybean can facilitate its improvement.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2010
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  • 7
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 120, No. 33 ( 2023-08-15)
    Abstract: While the world is rapidly transforming into a superaging society, pharmaceutical approaches to treat sarcopenia have hitherto not been successful due to their insufficient efficacy and failure to specifically target skeletal muscle cells (skMCs). Although electrical stimulation (ES) is emerging as an alternative intervention, its efficacy toward treating sarcopenia remains unexplored. In this study, we demonstrate a silver electroceutical technology with the potential to treat sarcopenia. First, we developed a high-throughput ES screening platform that can simultaneously stimulate 15 independent conditions, while utilizing only a small number of human-derived primary aged/young skMCs (hAskMC/hYskMC). The in vitro screening showed that specific ES conditions induced hypertrophy and rejuvenation in hAskMCs, and the optimal ES frequency in hAskMCs was different from that in hYskMCs. When applied to aged mice in vivo, specific ES conditions improved the prevalence and thickness of Type IIA fibers, along with biomechanical attributes, toward a younger skMC phenotype. This study is expected to pave the way toward an electroceutical treatment for sarcopenia with minimal side effects and help realize personalized bioelectronic medicine.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2023
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