GLORIA

GEOMAR Library Ocean Research Information Access

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 117, No. 5 ( 2020-02-04), p. 2560-2569
    Abstract: De novo mutations (DNMs), or mutations that appear in an individual despite not being seen in their parents, are an important source of genetic variation whose impact is relevant to studies of human evolution, genetics, and disease. Utilizing high-coverage whole-genome sequencing data as part of the Trans-Omics for Precision Medicine (TOPMed) Program, we called 93,325 single-nucleotide DNMs across 1,465 trios from an array of diverse human populations, and used them to directly estimate and analyze DNM counts, rates, and spectra. We find a significant positive correlation between local recombination rate and local DNM rate, and that DNM rate explains a substantial portion (8.98 to 34.92%, depending on the model) of the genome-wide variation in population-level genetic variation from 41K unrelated TOPMed samples. Genome-wide heterozygosity does correlate with DNM rate, but only explains 〈 1% of variation. While we are underpowered to see small differences, we do not find significant differences in DNM rate between individuals of European, African, and Latino ancestry, nor across ancestrally distinct segments within admixed individuals. However, we did find significantly fewer DNMs in Amish individuals, even when compared with other Europeans, and even after accounting for parental age and sequencing center. Specifically, we found significant reductions in the number of C→A and T→C mutations in the Amish, which seem to underpin their overall reduction in DNMs. Finally, we calculated near-zero estimates of narrow sense heritability ( h 2 ), which suggest that variation in DNM rate is significantly shaped by nonadditive genetic effects and the environment.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2020
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 114, No. 51 ( 2017-12-19), p. 13531-13536
    Abstract: Engaging undergraduate students in scientific research promises substantial benefits, but it is not accessible to all students and is rarely implemented early in college education, when it will have the greatest impact. An inclusive Research Education Community (iREC) provides a centralized scientific and administrative infrastructure enabling engagement of large numbers of students at different types of institutions. The Science Education Alliance–Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) is an iREC that promotes engagement and continued involvement in science among beginning undergraduate students. The SEA-PHAGES students show strong gains correlated with persistence relative to those in traditional laboratory courses regardless of academic, ethnic, gender, and socioeconomic profiles. This persistent involvement in science is reflected in key measures, including project ownership, scientific community values, science identity, and scientific networking.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2017
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    In: Bulletin of Spanish Studies, Informa UK Limited, Vol. 93, No. 3 ( 2016-03-15), p. 515-544
    Type of Medium: Online Resource
    ISSN: 1475-3820 , 1478-3428
    RVK:
    Language: English
    Publisher: Informa UK Limited
    Publication Date: 2016
    detail.hit.zdb_id: 2102149-1
    SSG: 5,3
    SSG: 7,34
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    In: Brain, Oxford University Press (OUP), Vol. 146, No. 2 ( 2023-02-13), p. 668-677
    Abstract: 5q-associated spinal muscular atrophy is a rare neuromuscular disorder with the leading symptom of a proximal muscle weakness. Three different drugs have been approved by the European Medicines Agency and Food and Drug Administration for the treatment of spinal muscular atrophy patients, however, long-term experience is still scarce. In contrast to clinical trial data with restricted patient populations and short observation periods, we report here real-world evidence on a broad spectrum of patients with early-onset spinal muscular atrophy treated with nusinersen focusing on effects regarding motor milestones, and respiratory and bulbar insufficiency during the first years of treatment. Within the SMArtCARE registry, all patients under treatment with nusinersen who never had the ability to sit independently before the start of treatment were identified for data analysis. The primary outcome of this analysis was the change in motor function evaluated with the Children’s Hospital of Philadelphia Infant Test of Neuromuscular Disorders and motor milestones considering World Health Organization criteria. Further, we evaluated data on the need for ventilator support and tube feeding, and mortality. In total, 143 patients with early-onset spinal muscular atrophy were included in the data analysis with a follow-up period of up to 38 months. We observed major improvements in motor function evaluated with the Children’s Hospital of Philadelphia Infant Test of Neuromuscular Disorders. Improvements were greater in children & gt;2 years of age at start of treatment than in older children. 24.5% of children gained the ability to sit independently. Major improvements were observed during the first 14 months of treatment. The need for intermittent ventilator support and tube feeding increased despite treatment with nusinersen. Our findings confirm the increasing real-world evidence that treatment with nusinersen has a dramatic influence on disease progression and survival in patients with early-onset spinal muscular atrophy. Major improvements in motor function are seen in children younger than 2 years at the start of treatment. Bulbar and respiratory function needs to be closely monitored, as these functions do not improve equivalent to motor function.
    Type of Medium: Online Resource
    ISSN: 0006-8950 , 1460-2156
    RVK:
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2023
    detail.hit.zdb_id: 1474117-9
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2012
    In:  Proceedings of the National Academy of Sciences Vol. 109, No. 19 ( 2012-05-08)
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 19 ( 2012-05-08)
    Abstract: In conclusion, we found that the H. pylori T4SS protein can increase the expression of miR-155 in immune cells independently of the known regulation via TLRs ( Fig. P1 ). Because evidence now suggests that TLR signaling in general is dampened at the gastric surface, our findings may be of particular relevance for persistent H. pylori infections in the human stomach, where it is known that strains containing the T4SS cause more severe disease. Future work is needed to resolve the precise roles of miR-155 and macrophages in H. pylori disease. MicroRNAs inhibit the expression of their gene targets. We also wanted to identify gene targets of miR-155 in macrophages during H. pylori infection. We used microarray analysis, a method of measuring the expression of large numbers of genes, to screen the gene activity in response to H. pylori in WT macrophages and also macrophages that had been depleted of miR-155. We compared microarray datasets to determine previously unidentified miR-155 gene targets, which were down-regulated during infection. Many of the gene targets identified are known to be associated with cell-death pathways and DNA damage responses. Of particular interest, among the 35 miR-155 down-regulated gene targets with predicted miR-155-binding sites were the genes Pmaip1 , Tspan14 , and Lpin1 , which have been variously linked to cell-death or apoptotic pathways ( Fig. P1 ). We found that H. pylori -infected macrophages lacking miR-155 were more sensitive to cell death induced by the DNA-damaging agent cisplatin. This result suggested that miR-155 is induced during H. pylori infection and protects macrophages against cell death. It is possible that prolonged macrophage survival contributes to H. pylori disease. Certainly, depletion of macrophages protected against H. pylori pathology in a mouse model of gastritis. Furthermore, depletion of miR-155 in T cells, another immune cell, also protected mice against such pathology ( 4 , 5 ). In both examples, bacterial loads remained high, although pathology was reduced, presenting an intriguing conundrum for H. pylori research. Using quantitative PCR (qPCR) techniques, a method to measure gene expression, we quantified the levels of miR-155 expressed during infection with different H. pylori strains and in the different macrophage cell types. We found that all bacterial strains increased miR-155 expression via activation of TLRs. More interestingly, we observed that strains containing the T4SS up-regulated miR-155 more strongly (when some other signaling pathways were blocked) than strains that lacked the T4SS. Thus, we concluded that, in addition to previous observations implicating TLRs in miR-155 regulation, miR-155 up-regulation also is dependent partly on the direct interaction of the T4SS with macrophages. Moreover, we found that this up-regulation occurred independently of the CagA protein and via the activation of another inflammatory signaling pathway, the NF-κB pathway. Thus, we identified a role for the prototypical H. pylori T4SS pathogenicity factor independent of its major effector protein, both of which are encoded on the bacterial cag PAI island. We wanted to know which bacterial factors are responsible for inducing the expression of miR-155, an miRNA mediator of inflammation that recently was discovered to be up-regulated during H. pylori infection ( 2 ). We studied its expression in macrophages and the consequences of this expression during H. pylori infection. To do so, we infected either WT mouse macrophages or macrophages that were mutated to lack Toll-like receptors (TLRs). TLRs are key receptors for bacterial/viral components, such as LPS, that stimulate responses from host immune cells. Macrophages, in particular, are rich in these receptors. For example, when LPS interacts with TLRs in macrophages, these macrophages are stimulated to mount a powerful immune response. Because miR-155 already has been demonstrated to be up-regulated when TLR2 and TLR4 ( 3 ) are stimulated in this manner, we used macrophages that lacked TLR2 and TLR4 or key TLR signaling adaptor proteins (MyD88/Trif) to identify other factors that might be responsible for inducing miR-155. We also used different H. pylori strains that either naturally lack some of the bacterial pathogenicity factors or contain antibiotic resistance cassettes in place of some of the pathogenicity factors. Bacterial factors implicated in H. pylori pathogenicity are expressed largely by the bacterial cag PAI island, which encodes the functional type four secretion system (T4SS) and the CagA effector protein. The innate immune responses of the host also are implicated as factors in H. pylori disease; for example, the inflammatory response itself may be potentially damaging to tissues ( 1 ). Macrophage immune cells are key mediators of inflammatory responses, but their precise role in H. pylori pathology is undetermined. MicroRNAs (miRNAs) are short sequences of genetic material that can inhibit genetic activity and which may play a role in macrophage-induced pathogenicity. The bacterium Helicobacter pylori infects ∼50% of the human population worldwide and is a major cause of gastritis, peptic ulcer, and gastric cancer. However, researchers have not yet discovered which factors determine whether infections progress from being relatively benign, and often symptomless, to causing severe disease (in 10–20% of cases). It is evident, however, that bacterial, host, and environmental factors are involved. Here, we report a unique role for the key H. pylori pathogenicity factor, the cag PAI pathogenicity island, a segment in the pathogen’s genome, in modulating an immune response during infection of host immune cells.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 119, No. 42 ( 2022-10-18)
    Abstract: Among mammals, the order Primates is exceptional in having a high taxonomic richness in which the taxa are arboreal, semiterrestrial, or terrestrial. Although habitual terrestriality is pervasive among the apes and African and Asian monkeys (catarrhines), it is largely absent among monkeys of the Americas (platyrrhines), as well as galagos, lemurs, and lorises (strepsirrhines), which are mostly arboreal. Numerous ecological drivers and species-specific factors are suggested to set the conditions for an evolutionary shift from arboreality to terrestriality, and current environmental conditions may provide analogous scenarios to those transitional periods. Therefore, we investigated predominantly arboreal, diurnal primate genera from the Americas and Madagascar that lack fully terrestrial taxa, to determine whether ecological drivers (habitat canopy cover, predation risk, maximum temperature, precipitation, primate species richness, human population density, and distance to roads) or species-specific traits (body mass, group size, and degree of frugivory) associate with increased terrestriality. We collated 150,961 observation hours across 2,227 months from 47 species at 20 sites in Madagascar and 48 sites in the Americas. Multiple factors were associated with ground use in these otherwise arboreal species, including increased temperature, a decrease in canopy cover, a dietary shift away from frugivory, and larger group size. These factors mostly explain intraspecific differences in terrestriality. As humanity modifies habitats and causes climate change, our results suggest that species already inhabiting hot, sparsely canopied sites, and exhibiting more generalized diets, are more likely to shift toward greater ground use.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2022
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 375, No. 6586 ( 2022-03-18), p. 1275-1281
    Abstract: A widespread adaptive change in antiherbivore response is seen in a common plant species in urban environments across 160 cities.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 368, No. 6493 ( 2020-05-22), p. 869-874
    Abstract: The sensitivity of tropical forest carbon to climate is a key uncertainty in predicting global climate change. Although short-term drying and warming are known to affect forests, it is unknown if such effects translate into long-term responses. Here, we analyze 590 permanent plots measured across the tropics to derive the equilibrium climate controls on forest carbon. Maximum temperature is the most important predictor of aboveground biomass (−9.1 megagrams of carbon per hectare per degree Celsius), primarily by reducing woody productivity, and has a greater impact per °C in the hottest forests ( 〉 32.2°C). Our results nevertheless reveal greater thermal resilience than observations of short-term variation imply. To realize the long-term climate adaptation potential of tropical forests requires both protecting them and stabilizing Earth’s climate.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 9
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 362, No. 6419 ( 2018-12-07)
    Abstract: To discover leads for next-generation chemoprotective antimalarial drugs, we tested more than 500,000 compounds for their ability to inhibit liver-stage development of luciferase-expressing Plasmodium spp. parasites (681 compounds showed a half-maximal inhibitory concentration of less than 1 micromolar). Cluster analysis identified potent and previously unreported scaffold families as well as other series previously associated with chemoprophylaxis. Further testing through multiple phenotypic assays that predict stage-specific and multispecies antimalarial activity distinguished compound classes that are likely to provide symptomatic relief by reducing asexual blood-stage parasitemia from those which are likely to only prevent malaria. Target identification by using functional assays, in vitro evolution, or metabolic profiling revealed 58 mitochondrial inhibitors but also many chemotypes possibly with previously unidentified mechanisms of action.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2018
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 10
    In: The Journal of Neuroscience, Society for Neuroscience, Vol. 20, No. 17 ( 2000-09-01), p. 6517-6528
    Type of Medium: Online Resource
    ISSN: 0270-6474 , 1529-2401
    Language: English
    Publisher: Society for Neuroscience
    Publication Date: 2000
    detail.hit.zdb_id: 1475274-8
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...