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  • 1
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 31 ( 2012-07-31), p. 12592-12597
    Abstract: Clara cells of mammalian airways have multiple functions and are morphologically heterogeneous. Although Notch signaling is essential for the development of these cells, it is unclear how Notch influences Clara cell specification and if diversity is established among Clara cell precursors. Here we identify expression of the secretoglobin Scgb3a2 and Notch activation as early events in a program of secretory cell fate determination in developing murine airways. We show that Scgb3a2 expression in vivo is Notch-dependent at early stages and ectopically induced by constitutive Notch1 activation, and also that in vitro Notch signaling together with the pan-airway transcription factor Ttf1 (Nkx2.1) synergistically regulate secretoglobin gene transcription. Furthermore, we identified a subpopulation of secretory precursors juxtaposed to presumptive neuroepithelial bodies (NEBs), distinguished by their strong Scgb3a2 and uroplakin 3a ( Upk3a ) signals and reduced Ccsp (Scgb1a1) expression. Genetic ablation of Ascl1 prevented NEB formation and selectively interfered with the formation of this subpopulation of cells. Lineage labeling of Upk3a -expressing cells during development showed that these cells remain largely uncommitted during embryonic development and contribute to Clara and ciliated cells in the adult lung. Together, our findings suggest a role for Notch in the induction of a Clara cell-specific program of gene expression, and reveals that the NEB microenvironment in the developing airways is a niche for a distinct subset of Clara-like precursors.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
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  • 2
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2010
    In:  Proceedings of the National Academy of Sciences Vol. 107, No. 21 ( 2010-05-25), p. 9736-9741
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 107, No. 21 ( 2010-05-25), p. 9736-9741
    Abstract: Many genes initially identified for their roles in cell fate determination or signaling during development can have a significant impact on tumorigenesis. In the developing cerebellum, Sonic hedgehog (Shh) stimulates the proliferation of granule neuron precursor cells (GNPs) by activating the Gli transcription factors. Inappropriate activation of Shh target genes results in unrestrained cell division and eventually medulloblastoma, the most common pediatric brain malignancy. We find dramatic differences in the gene networks that are directly driven by the Gli1 transcription factor in GNPs and medulloblastoma. Gli1 binding location analysis revealed hundreds of genomic loci bound by Gli1 in normal and cancer cells. Only one third of the genes bound by Gli1 in GNPs were also bound in tumor cells. Correlation with gene expression levels indicated that 116 genes were preferentially transcribed in tumors, whereas 132 genes were target genes in both GNPs and medulloblastoma. Quantitative PCR and in situ hybridization for some putative target genes support their direct regulation by Gli. The results indicate that transformation of normal GNPs into deadly tumor cells is accompanied by a distinct set of Gli-regulated genes and may provide candidates for targeted therapies.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2010
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    detail.hit.zdb_id: 1461794-8
    SSG: 11
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  • 3
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2013
    In:  Proceedings of the National Academy of Sciences Vol. 110, No. 48 ( 2013-11-26), p. 19450-19455
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 110, No. 48 ( 2013-11-26), p. 19450-19455
    Abstract: Liver kinase b1 (Lkb1) protein kinase activity regulates cell growth and cell polarity. Here, we show Lkb1 is essential for maintaining a balance between mitotic and postmitotic cell fates in development of the mammalian skeleton. In this process, Lkb1 activity controls the progression of mitotic chondrocytes to a mature, postmitotic hypertrophic fate. Loss of this Lkb1 -dependent switch leads to a dramatic expansion of immature chondrocytes and formation of enchondroma-like tumors. Pathway analysis points to a mammalian target of rapamycin complex 1-dependent mechanism that can be partially suppressed by rapamycin treatment. These findings highlight a critical requirement for integration of mammalian target of rapamycin activity into developmental decision-making during mammalian skeletogenesis.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2013
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2010
    In:  Proceedings of the National Academy of Sciences Vol. 107, No. 9 ( 2010-03-02), p. 4194-4199
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 107, No. 9 ( 2010-03-02), p. 4194-4199
    Abstract: Macrophages are required for tissue homeostasis through their role in regulation of the immune response and the resolution of injury. Here we show, using the kidney as a model, that the Wnt pathway ligand Wnt7b is produced by macrophages to stimulate repair and regeneration. When macrophages are inducibly ablated from the injured kidney, the canonical Wnt pathway response in kidney epithelial cells is reduced. Furthermore, when Wnt7b is somatically deleted in macrophages, repair of injury is greatly diminished. Finally, injection of the Wnt pathway regulator Dkk2 enhances the repair process and suggests a therapeutic option. Because Wnt7b is known to stimulate epithelial responses during kidney development, these findings suggest that macrophages are able to rapidly invade an injured tissue and reestablish a developmental program that is beneficial for repair and regeneration.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2010
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
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  • 5
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 17 ( 2012-04-24)
    Abstract: Our results have broad clinical implications. Small-molecule inhibitors targeting the Smo signaling molecule are being evaluated currently for the treatment of pancreatic cancer ( 5 ). However, the activity of these Smo inhibitors likely is limited to the stromal compartment, having no effect on epithelial cells. Our genetic data identifying an alternative genetic pathway involving Gli argue strongly for the clinical development of Gli inhibitors, because these molecules contribute critical function in the tumor epithelium as well as the tumor stroma. We next investigated which downstream genes mediated Gli-driven phenotypes in pancreatic cancer cells. We performed gene-expression profiling analysis in human pancreatic ductal adenocarcinoma cells in which Gli-mediated transcription had been inhibited by Gli3T. Interestingly, we found that Gli activation in pancreatic cancer cells imposed a unique transcriptional program. Specifically, we found that the expression of the IκB kinase IKBKE (IKKε) was regulated by Gli proteins. These results suggest that IKBKE may play a critical role in pancreatic tumorigenesis. In general, kinases are enzymes that affect other proteins by adding phosphate molecules to these proteins. IKBKE is a noncanonical IkB kinase involved in stimulating the NF-κB signaling pathway. We showed that IKBKE is highly expressed in pancreatic tumors that are characterized by both Kras and Gli activation. We also found that Gli regulates NF-κB activity in vitro and in vivo. Furthermore, we demonstrated that Gli-dependent IKBKE expression in pancreatic cancer cells is essential for maintaining their cell survival and transformation characteristics, which are fundamental properties of cancerous cells. These data establish a connection between Gli transcription factors and the IKBKE and NF-κB activity in tumorigenesis, providing a molecular basis for the observed requirement of Gli transcription in the development of pancreatic ductal adenocarcinoma in vivo. In addition, we evaluated the tumorigenic potential of Gli1 in pancreatic cancer by ectopically expressing Gli1 in the mouse pancreas. We found that Gli1 activation significantly enhanced the ability of Kras to promote tumor development. Thus, both our loss-of-function and gain-of-function analyses highlight the functional importance of epithelial Gli activity in Kras-induced pancreatic tumorigenesis in vivo. However, using a primary pancreatic ductal epithelial cell (PDEC) culture, we showed that Gli-mediated transcription activation is required for Kras-induced PDEC proliferation and survival. Additionally, we combined this model with another in which oncogenic Kras activation in the mouse pancreatic epithelium drove tumor initiation and progression, mimicking the pathogenesis of human pancreatic cancer. Significantly, when these mice were genetically modified to exhibit both activation of Kras and inhibition of Gli transcription in the pancreatic epithelium, we found that the development of pancreatic precursor lesions and pancreatic ductal adenocarcinoma initiated by Kras activation was blocked. This inhibition happened even when the p53 tumor suppressor, which commonly is inactivated in this disease, was deleted. These results provide genetic evidence that Gli activity is required for Kras-driven transformation of the pancreatic epithelium. To investigate the role of Gli in pancreatic tumorigenesis, we generated a mouse model of pancreatic epithelium-specific inhibition of Gli-mediated transcription. This model was achieved by the ectopic expression of a dominant Gli3 repressor allele, Gli3T, which is capable of inhibiting Gli1- and Gli2-mediated activation of transcription. We found that inhibition of Gli transcriptional activity did not affect differentiation of the pancreatic epithelial cell lineages. This lack of effect suggests that epithelial Gli activity is largely dispensable for the proper development of the mouse pancreas. The Gli proteins Gli1, Gli2, and Gli3 are transcription factors. They operate in a cellular signaling pathway called the “Hedgehog” (Hh) pathway that often is activated in human tumors. The Hh pathway is mediated by activation of a cell-surface molecule, Smoothened (Smo) ( 3 ). Stimulation of the Hh pathway results in the activation of Gli proteins. However, Gli proteins may be regulated by other oncogenic pathways. For example, Gli1 gene expression is maintained in pancreatic cancer cells despite deletion of the Smo gene and is regulated in part by Kras independently of Hh ligand input ( 4 ). However, Gli's role in pancreatic tumorigenesis in vivo remains unexplored. Pancreatic ductal adenocarcinoma (PDAC) is the fourth leading cause of cancer-related mortality in the United States ( 1 ). This disease arises from precursor lesions in pancreatic epithelium, characterized by mutations in a potential cancer-causing gene called the “ KRAS oncogene” ( 1 , 2 ). However, limited understanding of the molecular and genetic mechanisms underlying Kras-dependent pancreatic tumorigenesis has impeded the development of early diagnostic and treatment tools. Here, using mouse genetics and cellular biology, we demonstrated that the ability of Gli proteins to activate gene transcription is critical for the development of Kras-driven pancreatic cancer ( Fig. P1 ). Significantly, we identified a key mechanism that operates after Gli transcription activity during pancreatic tumorigenesis: the induction of the expression of the atypical IkB kinase IKBKE and the activity of the NF-κB pathway in the tumor epithelium ( Fig. P1 ).
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
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  • 6
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 110, No. 12 ( 2013-03-19), p. 4768-4773
    Abstract: Aberrant connectivity is implicated in many neurological and psychiatric disorders, including Alzheimer’s disease and schizophrenia. However, other than a few disease-associated candidate genes, we know little about the degree to which genetics play a role in the brain networks; we know even less about specific genes that influence brain connections. Twin and family-based studies can generate estimates of overall genetic influences on a trait, but genome-wide association scans (GWASs) can screen the genome for specific variants influencing the brain or risk for disease. To identify the heritability of various brain connections, we scanned healthy young adult twins with high-field, high-angular resolution diffusion MRI. We adapted GWASs to screen the brain’s connectivity pattern, allowing us to discover genetic variants that affect the human brain’s wiring. The association of connectivity with the SPON1 variant at rs2618516 on chromosome 11 (11p15.2) reached connectome-wide, genome-wide significance after stringent statistical corrections were enforced, and it was replicated in an independent subsample. rs2618516 was shown to affect brain structure in an elderly population with varying degrees of dementia. Older people who carried the connectivity variant had significantly milder clinical dementia scores and lower risk of Alzheimer’s disease. As a posthoc analysis, we conducted GWASs on several organizational and topological network measures derived from the matrices to discover variants in and around genes associated with autism ( MACROD2 ), development ( NEDD4 ), and mental retardation ( UBE2A ) significantly associated with connectivity. Connectome-wide, genome-wide screening offers substantial promise to discover genes affecting brain connectivity and risk for brain diseases.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2013
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    detail.hit.zdb_id: 1461794-8
    SSG: 11
    SSG: 12
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  • 7
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 340, No. 6139 ( 2013-06-21), p. 1467-1471
    Abstract: A genome-wide association study (GWAS) of educational attainment was conducted in a discovery sample of 101,069 individuals and a replication sample of 25,490. Three independent single-nucleotide polymorphisms (SNPs) are genome-wide significant (rs9320913, rs11584700, rs4851266), and all three replicate. Estimated effects sizes are small (coefficient of determination R 2 ≈ 0.02%), approximately 1 month of schooling per allele. A linear polygenic score from all measured SNPs accounts for ≈2% of the variance in both educational attainment and cognitive function. Genes in the region of the loci have previously been associated with health, cognitive, and central nervous system phenotypes, and bioinformatics analyses suggest the involvement of the anterior caudate nucleus. These findings provide promising candidate SNPs for follow-up work, and our effect size estimates can anchor power analyses in social-science genetics.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2013
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    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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