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  • American Association for the Advancement of Science (AAAS)  (10)
  • English  (10)
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  • American Association for the Advancement of Science (AAAS)  (10)
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  • English  (10)
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  • 1
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2023
    In:  Science Vol. 379, No. 6634 ( 2023-02-24), p. 840-847
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 379, No. 6634 ( 2023-02-24), p. 840-847
    Abstract: A single-cell atlas of antler regrowth reveals a population of antler blastema progenitor cells required for regeneration.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
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  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 380, No. 6648 ( 2023-06-02)
    Abstract: Primates have evolved a diverse set of social systems, from solitary living to large multilevel societies. The traditional socioecological model explains this diversity as a response to changing environments, which shaped patterns of cooperation and competition for resources and predator defense. However, the socioecological model does not explain why sympatric species living in the same environment exhibit different social systems. There is a growing consensus that primate social organization shows a strong phylogenetic signal as a result of shared inheritance from a common ancestor and evolved stepwise along with species differentiation. This implies a genetic basis for the evolution of animal social systems. However, the genomic mechanisms that underlie the expression of primate social systems remain poorly understood. RATIONALE Asian colobines, a subfamily of Old World monkeys, are represented by seven genera and 55 species that are distributed from tropical rainforests to snow-covered mountains. They exhibit four distinct types of social organization and provide a good model for examining the mechanisms that drive social evolution from a common ancestral state to the diverse systems present today. By integrating new genomic data across all seven colobine genera with paleoenvironmental information, the fossil record, social organization characteristics, social behavioral characteristics, and ecological niche modeling, we constructed a socioecological-genomic framework to identify selective pressures that form the genetic basis for social evolution in Asian colobines. RESULTS To understand the evolutionary process of social systems in Asian colobines, we first reconstructed their phylogenetic relationships using whole-genome data. In contrast to the previous hypothesis of three major clades, our study reveals that Asian colobines split into two clades: the odd-nosed monkeys and the classical langurs. Our phylogenetic analyses detected a strong signal in colobine social evolution, suggesting that these social systems evolved in a stepwise manner, with ancestral one-male, multifemale groups fusing into semimultilevel societies characterized by fission-fusion and then merging into complex multilevel societies. Consistent with our ecological results indicating that extant colobine primates that inhabit colder environments tend to live in larger groups, we found that adaptations driven by ancient cold events, including the late Miocene cooling and Pleistocene glacial periods, played an important role in promoting these changes in social evolution. Furthermore, our genomic analyses revealed that these cold events promoted the selection of genes involved in energy metabolism and neurohormonal regulation. In particular, more-efficient dopamine and oxytocin pathways developed in odd-nosed monkeys, which might have resulted in the prolongation of maternal care and lactation, favoring infant survival in cold environments. These adaptive changes also appear to have strengthened interindividual affiliation, increased male-male tolerance, and facilitated the stepwise social aggregation from independent one-male, multifemale groups to large multilevel societies in Asian colobines. CONCLUSION Our results reveal a stepwise evolutionary scenario of social organization in Asian colobines. We show that ancient glacial events selected for neurohormonal regulation, including dopamine and oxytocin pathways that promoted aggregation from one-male, multifemale groups into large multilevel societies. Our study demonstrates a direct link between a genomically regulated adaptation and social evolution in primates and offers new insights into the mechanisms that underpin behavioral evolution across animal taxa. Adaptation for survival in cold climates facilitated evolution of social behavior in colobine monkeys. Cold environments promoted the social evolution of Asian colobines in a stepwise manner. Genomic changes in neurohormonal regulation, including in the dopamine and oxytocin pathways, improved social affiliation in odd-nosed monkeys and thus promoted social aggregations from independent one-male, multifemale groups into large multilevel societies. Ma, million years ago.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
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  • 3
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2023
    In:  Science Vol. 380, No. 6648 ( 2023-06-02), p. 972-979
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 380, No. 6648 ( 2023-06-02), p. 972-979
    Abstract: Signaling at cilia helps couple neurons in the master biological clock in the brain.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
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  • 4
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2017
    In:  Science Vol. 355, No. 6329 ( 2017-03-10)
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 355, No. 6329 ( 2017-03-10)
    Abstract: Perfect matching of an assembled physical sequence to a specified designed sequence is crucial to verify design principles in genome synthesis. We designed and de novo synthesized 536,024–base pair chromosome synV in the “Build-A-Genome China” course. We corrected an initial isolate of synV to perfectly match the designed sequence using integrative cotransformation and clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR-associated protein 9 (Cas9)–mediated editing in 22 steps; synV strains exhibit high fitness under a variety of culture conditions, compared with that of wild-type V strains. A ring synV derivative was constructed, which is fully functional in Saccharomyces cerevisiae under all conditions tested and exhibits lower spore viability during meiosis. Ring synV chromosome can extends Sc2.0 design principles and provides a model with which to study genomic rearrangement, ring chromosome evolution, and human ring chromosome disorders.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2017
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  • 5
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2017
    In:  Science Vol. 355, No. 6329 ( 2017-03-10)
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 355, No. 6329 ( 2017-03-10)
    Abstract: Debugging a genome sequence is imperative for successfully building a synthetic genome. As part of the effort to build a designer eukaryotic genome, yeast synthetic chromosome X (synX), designed as 707,459 base pairs, was synthesized chemically. SynX exhibited good fitness under a wide variety of conditions. A highly efficient mapping strategy called pooled PCRTag mapping (PoPM), which can be generalized to any watermarked synthetic chromosome, was developed to identify genetic alterations that affect cell fitness (“bugs”). A series of bugs were corrected that included a large region bearing complex amplifications, a growth defect mapping to a recoded sequence in FIP1 , and a loxPsym site affecting promoter function of ATP2 . PoPM is a powerful tool for synthetic yeast genome debugging and an efficient strategy for phenotype-genotype mapping.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2017
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  • 6
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 364, No. 6446 ( 2019-06-21)
    Abstract: The ruminants are one of the most successful mammalian lineages, exhibiting morphological and habitat diversity and containing several key livestock species. To better understand their evolution, we generated and analyzed de novo assembled genomes of 44 ruminant species, representing all six Ruminantia families. We used these genomes to create a time-calibrated phylogeny to resolve topological controversies, overcoming the challenges of incomplete lineage sorting. Population dynamic analyses show that population declines commenced between 100,000 and 50,000 years ago, which is concomitant with expansion in human populations. We also reveal genes and regulatory elements that possibly contribute to the evolution of the digestive system, cranial appendages, immune system, metabolism, body size, cursorial locomotion, and dentition of the ruminants.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2019
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  • 7
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 367, No. 6475 ( 2020-01-17), p. 272-277
    Abstract: One great challenge in understanding the history of life is resolving the influence of environmental change on biodiversity. Simulated annealing and genetic algorithms were used to synthesize data from 11,000 marine fossil species, collected from more than 3000 stratigraphic sections, to generate a new Cambrian to Triassic biodiversity curve with an imputed temporal resolution of 26 ± 14.9 thousand years. This increased resolution clarifies the timing of known diversification and extinction events. Comparative analysis suggests that partial pressure of carbon dioxide ( P co 2 ) is the only environmental factor that seems to display a secular pattern similar to that of biodiversity, but this similarity was not confirmed when autocorrelation within that time series was analyzed by detrending. These results demonstrate that fossil data can provide the temporal and taxonomic resolutions necessary to test (paleo)biological hypotheses at a level of detail approaching those of long-term ecological analyses.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
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  • 8
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2019
    In:  Science Vol. 366, No. 6469 ( 2019-11-29), p. 1095-1098
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 366, No. 6469 ( 2019-11-29), p. 1095-1098
    Abstract: The creation of nanostructures with precise chemistries on material surfaces is of importance in a wide variety of areas such as lithography, superhydrophobicity, and cell adhesion. We describe a platform for surface functionalization that involves the fabrication of cylindrical micellar brushes on a silicon wafer through seeded growth of crystallizable block copolymers at the termini of immobilized, surface-confined crystallite seeds. The density, length, and coronal chemistry of the micellar brushes can be precisely tuned, and post-growth decoration with nanoparticles enables applications in catalysis and antibacterial surface modification. The micellar brushes can also be grown on ultrathin two-dimensional materials such as graphene oxide nanosheets and further assembled into a membrane for the separation of oil-in-water emulsions and gold nanoparticles.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2019
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  • 9
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 337, No. 6093 ( 2012-07-27), p. 450-453
    Abstract: A nanolaser is a key component for on-chip optical communications and computing systems. Here, we report on the low-threshold, continuous-wave operation of a subdiffraction nanolaser based on surface plasmon amplification by stimulated emission of radiation. The plasmonic nanocavity is formed between an atomically smooth epitaxial silver film and a single optically pumped nanorod consisting of an epitaxial gallium nitride shell and an indium gallium nitride core acting as gain medium. The atomic smoothness of the metallic film is crucial for reducing the modal volume and plasmonic losses. Bimodal lasing with similar pumping thresholds was experimentally observed, and polarization properties of the two modes were used to unambiguously identify them with theoretically predicted modes. The all-epitaxial approach opens a scalable platform for low-loss, active nanoplasmonics.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2012
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  • 10
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 377, No. 6610 ( 2022-09-02)
    Abstract: Brain regeneration requires the coordination of complex responses in a time- and region-specific manner. Identifying the cell types and molecules involved in this process would advance our understanding of brain regeneration and provide potential targets for regenerative medicine research. However, progress in this field has been hampered by the limited regeneration capacity of the mammalian brain and an incomplete mechanistic understanding of the regeneration process at both the cellular and molecular levels. Axolotls ( Ambystoma mexicanum ) can regenerate damaged appendages and multiple internal organs, including the brain. Therefore, axolotls may serve as a model for studying brain regeneration. RATIONALE If we are to understand the mechanism of brain regeneration, we need research tools that can achieve large-scale data acquisition and analyses to simultaneously decode complex cellular and molecular responses. It also seemed to us that a comparison between brain regeneration and developmental processes would help to provide new insights into the nature of brain regeneration. Accordingly, we removed a small portion of the lateral pallium region of the axolotl left telencephalon and collected tissue samples at multiple stages during regeneration. In parallel, we collected tissue samples of the axolotl telencephalon at multiple developmental stages. We then used high-definition and large-field Stereo-seq (spatial enhanced resolution omics sequencing) technology to generate spatial transcriptomic data from sections that covered both hemispheres of the axolotl telencephalon at single-cell resolution. Analyses of cell type annotation, cell spatial organization, gene activity dynamics, and cell state transition were performed for a mechanistic investigation of injury-induced regeneration compared to these cell attributes during development. RESULTS With the use of Stereo-seq, we generated a group of spatial transcriptomic data of telencephalon sections that covered six developmental and seven injury-induced regenerative stages. The data at single-cell resolution enabled us to identify 33 cell types present during development and 28 cell types involved in regeneration, including different types of excitatory and inhibitory neurons, and several ependymoglial cell subtypes. For development, our data revealed a primitive type of ependymoglial cells that may give rise to three subgroups of adult ependymoglial cells localized in separate areas of the ventricular zone, with different molecular features and potentially different functions. For regeneration, we discovered a subpopulation of ependymoglial cells that may originate from local resident ependymoglial cells activated by injury. This population of progenitor cells may then proliferate to cover the wound area and subsequently replenish lost neurons through a state transition to intermediate progenitors, immature neurons, and eventually mature neurons. When comparing cellular and molecular dynamics of the axolotl telencephalon between development and regeneration, we found that injury-induced ependymoglial cells were similar to developmental-specific ependymoglial cells in terms of their transcriptome state. We also observed that regeneration of the axolotl telencephalon exhibited neurogenesis patterns similar to those seen in development in molecular cascades and the potential cell lineage transition, which suggests that brain regeneration partially recapitulates the development process. CONCLUSION Our spatial transcriptomic data highlight the cellular and molecular features of the axolotl telencephalon during development and injury-induced regeneration. Further characterization of the activation and functional regulation of ependymoglial cells may yield insights for improving the regenerative capability of mammalian brains. Our single-cell spatial transcriptome of the axolotl telencephalon, a tetrapod vertebrate, also provides data useful for further research in developmental, regenerative, and evolutionary brain biology. All data are accessible in an interactive database ( https://db.cngb.org/stomics/artista ). Development and regeneration of axolotl telencephalon. The spatially resolved single-cell transcriptome of the adult axolotl telencephalon as determined by Stereo-seq analyses (left). Upon brain injury in the highlighted lateral pallium region of the left hemisphere, a neural progenitor subpopulation at the wound site was rapidly induced and subsequently replenished lost neurons (bottom right) through a process that partially resembles neurogenesis during development (top right). CREDIT: YUNZHI YANG, BGI
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
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    detail.hit.zdb_id: 2066996-3
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