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  • 1
    In: Traffic, Wiley, Vol. 13, No. 2 ( 2012-02), p. 204-217
    Abstract: Multi‐modality microscopes incorporate multiple microscopy techniques into one module, imaging through a common objective lens. Simultaneous or consecutive image acquisition of a single specimen, using multiple techniques, increases the amount of measurable information available. In order to benefit from each modality, it is necessary to accurately co‐register data sets. Intrinsic differences in the image formation process employed by each modality result in images which possess different characteristics. In addition, as a result of using different measurement devices, images often differ in size and can suffer relative geometrical deformations including rotation, scale and translation, making registration a complex problem. Current methods generally rely on manual input and are therefore subject to human error. Here, we present an automated image registration tool for fluorescence microscopy. We show that it successfully registers images obtained via total internal reflection fluorescence (TIRF), or epi‐fluorescence, and confocal microscopy. Furthermore, we provide several other applications including channel merging following image acquisition through an emission beam splitter, and lateral stage drift correction. We also discuss areas of membrane trafficking which could benefit from application of Auto‐Align. Auto‐Align is an essential item in the advanced microscopist's toolbox which can create a synergy of single or multi‐modality image data.
    Type of Medium: Online Resource
    ISSN: 1398-9219 , 1600-0854
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2012
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  • 2
    Online Resource
    Online Resource
    Informa UK Limited ; 2010
    In:  Molecular and Cellular Biology Vol. 30, No. 24 ( 2010-12-01), p. 5672-5685
    In: Molecular and Cellular Biology, Informa UK Limited, Vol. 30, No. 24 ( 2010-12-01), p. 5672-5685
    Type of Medium: Online Resource
    ISSN: 1098-5549
    Language: English
    Publisher: Informa UK Limited
    Publication Date: 2010
    detail.hit.zdb_id: 1474919-1
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  • 3
    Online Resource
    Online Resource
    The Company of Biologists ; 2010
    In:  Journal of Cell Science Vol. 123, No. 21 ( 2010-11-01), p. 3621-3628
    In: Journal of Cell Science, The Company of Biologists, Vol. 123, No. 21 ( 2010-11-01), p. 3621-3628
    Abstract: Total internal reflection fluorescence (TIRF) microscopy can be used in a wide range of cell biological applications, and is particularly well suited to analysis of the localization and dynamics of molecules and events near the plasma membrane. The TIRF excitation field decreases exponentially with distance from the cover slip on which cells are grown. This means that fluorophores close to the cover slip (e.g. within ~100 nm) are selectively illuminated, highlighting events that occur within this region. The advantages of using TIRF include the ability to obtain high-contrast images of fluorophores near the plasma membrane, very low background from the bulk of the cell, reduced cellular photodamage and rapid exposure times. In this Commentary, we discuss the applications of TIRF to the study of cell biology, the physical basis of TIRF, experimental setup and troubleshooting.
    Type of Medium: Online Resource
    ISSN: 1477-9137 , 0021-9533
    Language: English
    Publisher: The Company of Biologists
    Publication Date: 2010
    detail.hit.zdb_id: 219171-4
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  • 4
    Online Resource
    Online Resource
    Elsevier BV ; 2014
    In:  The International Journal of Biochemistry & Cell Biology Vol. 51 ( 2014-06), p. 23-28
    In: The International Journal of Biochemistry & Cell Biology, Elsevier BV, Vol. 51 ( 2014-06), p. 23-28
    Type of Medium: Online Resource
    ISSN: 1357-2725
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2014
    detail.hit.zdb_id: 2001470-3
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  • 5
    Online Resource
    Online Resource
    American Society for Cell Biology (ASCB) ; 2015
    In:  Molecular Biology of the Cell Vol. 26, No. 9 ( 2015-05), p. 1675-1686
    In: Molecular Biology of the Cell, American Society for Cell Biology (ASCB), Vol. 26, No. 9 ( 2015-05), p. 1675-1686
    Abstract: We studied two aspects of vimentin intermediate filament dynamics—transport of filaments and subunit exchange. We observed transport of long filaments in the periphery of cells using live-cell structured illumination microscopy. We studied filament transport elsewhere in cells using a photoconvertible-vimentin probe and total internal reflection microscopy. We found that filaments were rapidly transported along linear tracks in both anterograde and retrograde directions. Filament transport was microtubule dependent but independent of microtubule polymerization and/or an interaction with the plus end–binding protein APC. We also studied subunit exchange in filaments by long-term imaging after photoconversion. We found that converted vimentin remained in small clusters along the length of filaments rather than redistributing uniformly throughout the network, even in cells that divided after photoconversion. These data show that vimentin filaments do not depolymerize into individual subunits; they recompose by severing and reannealing. Together these results show that vimentin filaments are very dynamic and that their transport is required for network maintenance.
    Type of Medium: Online Resource
    ISSN: 1059-1524 , 1939-4586
    Language: English
    Publisher: American Society for Cell Biology (ASCB)
    Publication Date: 2015
    detail.hit.zdb_id: 1474922-1
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  • 6
    Online Resource
    Online Resource
    Elsevier BV ; 2017
    In:  The International Journal of Biochemistry & Cell Biology Vol. 83 ( 2017-02), p. 65-70
    In: The International Journal of Biochemistry & Cell Biology, Elsevier BV, Vol. 83 ( 2017-02), p. 65-70
    Type of Medium: Online Resource
    ISSN: 1357-2725
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2017
    detail.hit.zdb_id: 2001470-3
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  • 7
    Online Resource
    Online Resource
    Elsevier BV ; 2010
    In:  Trends in Cell Biology Vol. 20, No. 2 ( 2010-2), p. 71-78
    In: Trends in Cell Biology, Elsevier BV, Vol. 20, No. 2 ( 2010-2), p. 71-78
    Type of Medium: Online Resource
    ISSN: 0962-8924
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2010
    detail.hit.zdb_id: 1498903-7
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  • 8
    Online Resource
    Online Resource
    The Company of Biologists ; 2013
    In:  Journal of Cell Science Vol. 126, No. 2 ( 2013-01-15), p. 613-624
    In: Journal of Cell Science, The Company of Biologists, Vol. 126, No. 2 ( 2013-01-15), p. 613-624
    Abstract: Fibroblast growth factor receptors (FGFRs) mediate a wide spectrum of cellular responses that are crucial for development and wound healing. However, aberrant FGFR activity leads to cancer. Activated growth factor receptors undergo stimulated endocytosis, but can continue to signal along the endocytic pathway. Endocytic trafficking controls the duration and intensity of signalling, and growth factor receptor signalling can lead to modifications of trafficking pathways. We have developed live-cell imaging methods for studying FGFR dynamics to investigate mechanisms that coordinate the interplay between receptor trafficking and signal transduction. Activated FGFR enters the cell following recruitment to pre-formed clathrin-coated pits (CCPs). However, FGFR activation stimulates clathrin-mediated endocytosis; FGF treatment increases the number of CCPs, including those undergoing endocytosis, and this effect is mediated by Src and its phosphorylation target Eps8. Eps8 interacts with the clathrin-mediated endocytosis machinery and depletion of Eps8 inhibits FGFR trafficking and immediate Erk signalling. Once internalized, FGFR passes through peripheral early endosomes en route to recycling and degredative compartments, through an Src- and Eps8-dependent mechanism. Thus Eps8 functions as a key coordinator in the interplay between FGFR signalling and trafficking. This work provides the first detailed mechanistic analysis of growth factor receptor clustering at the cell surface through signal transduction and endocytic trafficking. As we have characterised the Src target Eps8 as a key regulator of FGFR signalling and trafficking, and identified the early endocytic system as the site of Eps8-mediated effects, this work provides novel mechanistic insight into the reciprocal regulation of growth factor receptor signalling and trafficking.
    Type of Medium: Online Resource
    ISSN: 1477-9137 , 0021-9533
    Language: English
    Publisher: The Company of Biologists
    Publication Date: 2013
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  • 9
    Online Resource
    Online Resource
    Elsevier BV ; 2017
    In:  Methods Vol. 115 ( 2017-02), p. 42-54
    In: Methods, Elsevier BV, Vol. 115 ( 2017-02), p. 42-54
    Type of Medium: Online Resource
    ISSN: 1046-2023
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2017
    detail.hit.zdb_id: 1471152-7
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  • 10
    In: Journal of Cell Science, The Company of Biologists
    Abstract: Growth factor signalling regulates multiple cellular functions and its misregulation has been linked to cancer development and progression. Ack1 (Activated Cdc42-associated kinase 1, TNK2), a non-receptor tyrosine kinase, has been implicated in trafficking and degradation of epidermal growth factor receptor (EGFR), yet the precise functions remain elusive. In this report we investigate the role of Ack1 in EGFR trafficking and show that Ack1 partially colocalises to Atg16L-positive structures upon EGF stimulation. These are proposed to be the isolation membranes during autophagosome formation. In addition we find that Ack1 colocalises and interacts with sequestosome 1 (p62/SQSTM1), a receptor for selective autophagy, via a ubiquitin associated domain and this interaction decreases upon EGF treatment, thus suggesting that Ack1 moves away from p62/SQSTM1 compartments. Furthermore, Ack1 interacts and colocalises with NBR1, another autophagic receptor, and this colocalisation is enhanced in the presence of ectopically expressed p62/SQSTM1. Finally, Ack1 knock-down results in accelerated lysosomal localisation of EGFR upon EGF treatment. Structure-function analyses of a panel of Ack1 deletion mutants have revealed key mechanistic aspects of these relationships. The Mig6-homology domain and clathrin binding domain both contribute to the colocalisation with EGFR, whereas the UBA domain is critical for the colocalisation with p62/SQSTM1, but not NBR1. Taken together, our studies demonstrate a novel role for Ack1 in diverting activated EGFR into a non-canonical degradative pathway, marked by association with p62/SQSTM1, NBR1 and Atg16L.
    Type of Medium: Online Resource
    ISSN: 1477-9137 , 0021-9533
    Language: English
    Publisher: The Company of Biologists
    Publication Date: 2014
    detail.hit.zdb_id: 219171-4
    detail.hit.zdb_id: 1483099-1
    SSG: 12
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