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  • Biodiversity Research  (184)
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  • 1
    In: Genetics, Oxford University Press (OUP), Vol. 177, No. 2 ( 2007-10-01), p. 689-697
    Abstract: Using a large consortium of undergraduate students in an organized program at the University of California, Los Angeles (UCLA), we have undertaken a functional genomic screen in the Drosophila eye. In addition to the educational value of discovery-based learning, this article presents the first comprehensive genomewide analysis of essential genes involved in eye development. The data reveal the surprising result that the X chromosome has almost twice the frequency of essential genes involved in eye development as that found on the autosomes.
    Type of Medium: Online Resource
    ISSN: 1943-2631
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2007
    detail.hit.zdb_id: 1477228-0
    SSG: 12
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  • 2
    In: Limnology and Oceanography, Wiley, Vol. 66, No. 5 ( 2021-05), p. 1687-1702
    Abstract: Ecotones have been described as “biodiversity hotspots” from myriad environments, yet have not been studied extensively in the deep ocean. While physiologically challenging, deep‐water methane seeps host highly productive communities fueled predominantly by chemosynthetic pathways. We hypothesized that the biological and geochemical influence of methane seeps extends into background habitats, resulting in the formation of a “chemotone” where chemosynthesis‐based and photosynthesis‐based communities overlap. To investigate this, we analyzed the macrofaunal assemblages and geochemical properties of sediments collected from “active,” “transition” (potential chemotone), and “background” habitats surrounding five Costa Rican methane seeps (depth range 377–1908 m). Sediment geochemistry demonstrated a clear distinction between active and transition habitats, but not between transition and background habitats. In contrast, biological variables confirmed the presence of a chemotone, characterized by intermediate biomass, a distinct species composition (including habitat endemics and species from both active and background habitats), and enhanced variability in species composition among samples. However, chemotone assemblages were not distinct from active and/or background assemblages in terms of faunal density, biological trait composition, or diversity. Biomass and faunal stable isotope data suggest that chemotones are driven by a gradient in food delivery, receiving supplements from chemosynthetic production in addition to available photosynthetic‐based resources. Sediment geochemistry suggests that chemosynthetic food supplements are delivered across the chemotone at least in part through the water column, as opposed to reflecting exclusively in situ chemosynthetic production in sediments. Management efforts should be cognisant of the ecological attributes and spatial extent of the chemotone that surrounds deep‐sea chemosynthetic environments.
    Type of Medium: Online Resource
    ISSN: 0024-3590 , 1939-5590
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
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    detail.hit.zdb_id: 412737-7
    SSG: 12
    SSG: 14
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  • 3
    Online Resource
    Online Resource
    Wiley ; 1999
    In:  Limnology and Oceanography Vol. 44, No. 4 ( 1999-06), p. 1155-1159
    In: Limnology and Oceanography, Wiley, Vol. 44, No. 4 ( 1999-06), p. 1155-1159
    Type of Medium: Online Resource
    ISSN: 0024-3590
    Language: English
    Publisher: Wiley
    Publication Date: 1999
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    detail.hit.zdb_id: 412737-7
    SSG: 12
    SSG: 14
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  • 4
    Online Resource
    Online Resource
    Oxford University Press (OUP) ; 2003
    In:  The Plant Cell Vol. 15, No. 1 ( 2003-01), p. 5-18
    In: The Plant Cell, Oxford University Press (OUP), Vol. 15, No. 1 ( 2003-01), p. 5-18
    Type of Medium: Online Resource
    ISSN: 1040-4651 , 1532-298X
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2003
    detail.hit.zdb_id: 623171-8
    detail.hit.zdb_id: 2004373-9
    SSG: 12
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  • 5
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 109, No. 47 ( 2012-11-20)
    Abstract: These data illustrate the linkages that can exist between abiotic and biological processes, because subsurface water–rock interactions govern vent-fluid geochemistry, which in turn corresponds to regional-scale niche partitioning. These connections provide a timely perspective on the role that symbionts likely play in governing faunal distribution at hydrothermal vents. Our increasing awareness of the prevalence of microbe–animal and microbe–plant interactions in many different environments, both aquatic and terrestrial, indicates that the potential effect of microbial symbiont physiology on the structure of other biological communities is likely significant. Moreover, we observed a striking pattern in the prevalence of the different host and symbiont associations (or holobionts) across the ELSC, wherein Alviniconcha host types with ε-proteobacteria and γ-proteobacteria clearly dominated at the northern and southern vent fields, respectively ( Fig. P1 ). This north–south transition in symbiont type corresponded to large changes in the concentrations of H 2 and H 2 S in the vent fluids, which in turn result from changes in fluid–rock interaction in the deep subsurface ( 3 ). In situ measurements of sulfide within Alviniconcha habitats established that they are exposed to higher H 2 S concentrations—and likely to higher H 2 concentrations—at the northernmost vents. Because only the bacterial symbiont can use these compounds for energy production, we posit that symbiont physiology, specifically energy metabolism relating to the oxidation of H 2 and/or H 2 S, affects the regional distribution of these symbioses. Future studies will ascertain the degree to which these compounds are used by the different symbionts. Results of previous studies of vent animals generally establish that certain species, including some animal–microbial symbioses, are found in specific physical and chemical environments, and many invoke host physiological attributes, such as tolerance of vent-fluid temperature and chemistry, as driving these distributions. However, it is equally likely that symbiont physiology influences habitat utilization, but the role of the symbionts in this niche partitioning remains largely unexplored. Here, we characterized the relationships among symbiont type, host type, and geochemistry at hydrothermal vents along ∼300 km of the Eastern Lau Spreading Center (ELSC) in the southwestern Pacific. Our survey of 288 Alviniconcha snails at four vent fields along the ELSC uncovered three genetically distinct host types as well as three distinct symbiont types from two classes of the bacterial phylum Proteobacteria (one type from ε-proteobacteria and two from γ-proteobacteria). We observed that each host type partnered with a specific assemblage of symbionts; some host types associated with only one symbiont type, whereas others associated with multiple symbiont types. One particular host type partnered with symbiont types from both bacterial classes, a rarity among vent animals hosting intracellular symbionts. Hydrothermal vents are common in the ocean, found along the midocean ridge system and tectonic margins. These vents emit heated fluids that are replete with reduced chemicals (reductants), such as hydrogen (H 2 ) and hydrogen sulfide (H 2 S), which are the end products of water–rock interactions at elevated temperatures in the deep subsurface. Numerous vent invertebrates, like Alviniconcha , have evolved obligate symbiotic relationships with intracellular bacteria that oxidize vent-derived reductants to harness energy for inorganic carbon fixation, the primary source of carbon for both host and symbiont biosynthesis and growth ( 2 ). Conditions around vents are highly variable over space and time, with geochemical and physical gradients that provide a number of physiochemical niches at both local and regional scales. It is well-established that differences in organisms’ intrinsic traits allow them to coexist by using different habitats or resources, a phenomenon referred to as “niche partitioning.” For symbiotic organisms, niche partitioning has the potential to be influenced by the traits of both partners. Despite a growing appreciation for the ubiquity of microbe–animal and microbe–plant symbioses in many environments, studies linking microbial symbionts to patterns of niche partitioning are surprisingly rare. Here, we present a comprehensive survey of a snail–microbial symbiosis at deep-sea hydrothermal vents. Snails of the genus Alviniconcha ( Fig. P1 A and B ) are dominant fauna at vents in the south Pacific, clustering at high densities in areas with active hydrothermal venting. Alviniconcha host chemoautotrophic bacteria, which fix carbon for both host and symbiont biosynthesis and growth using energy generated from the oxidation of vent-derived compounds ( 1 ). Our studies revealed cryptic diversity in the host and symbionts, unrecognized host–symbiont combinations (holobionts), and striking patterns of holobiont distribution across ∼300 km of an oceanic spreading center ( Fig. P1 C and D ). Moreover, the distribution of symbiont types corresponded to regional gradients in the concentrations of two vent-derived compounds ( Fig. P1 C ) that can be used only by the symbionts, suggesting that Alviniconcha holobionts partition their geochemical niches according to their symbionts’ physiological capacity to use these compounds. These data represent compelling evidence that niche partitioning by vent symbioses might be influenced by symbiont physiological capacity.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
    RVK:
    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2012
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  • 6
    Online Resource
    Online Resource
    Elsevier BV ; 2002
    In:  Aquatic Botany Vol. 74, No. 2 ( 2002-10), p. 109-120
    In: Aquatic Botany, Elsevier BV, Vol. 74, No. 2 ( 2002-10), p. 109-120
    Type of Medium: Online Resource
    ISSN: 0304-3770
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2002
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    detail.hit.zdb_id: 1496041-2
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Elsevier BV ; 2011
    In:  Environmental and Experimental Botany Vol. 71, No. 1 ( 2011-04), p. 1-9
    In: Environmental and Experimental Botany, Elsevier BV, Vol. 71, No. 1 ( 2011-04), p. 1-9
    Type of Medium: Online Resource
    ISSN: 0098-8472
    RVK:
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2011
    detail.hit.zdb_id: 1497561-0
    SSG: 12
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  • 8
    In: Journal of Experimental Marine Biology and Ecology, Elsevier BV, Vol. 409, No. 1-2 ( 2011-12), p. 186-193
    Type of Medium: Online Resource
    ISSN: 0022-0981
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2011
    detail.hit.zdb_id: 410283-6
    detail.hit.zdb_id: 1483103-X
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    SSG: 7,20
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  • 9
    Online Resource
    Online Resource
    Elsevier BV ; 2006
    In:  Journal of Experimental Marine Biology and Ecology Vol. 337, No. 1 ( 2006-9), p. 30-37
    In: Journal of Experimental Marine Biology and Ecology, Elsevier BV, Vol. 337, No. 1 ( 2006-9), p. 30-37
    Type of Medium: Online Resource
    ISSN: 0022-0981
    Language: English
    Publisher: Elsevier BV
    Publication Date: 2006
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    detail.hit.zdb_id: 1483103-X
    SSG: 12
    SSG: 7,20
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  • 10
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2006
    In:  Science Vol. 312, No. 5771 ( 2006-04-14), p. 231-231
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 312, No. 5771 ( 2006-04-14), p. 231-231
    Abstract: The highest oceanic temperatures are found at hydrothermal vents, where the polychaete Paralvinella sulfincola lives on vent sulfides within steep and dynamic thermal gradients. To determine P. sulfincola thermotolerance and preference, we developed a high-pressure aquarium that mimics in situ thermal gradients and permits P. sulfincola to move within the gradient. These polychaetes were thermotaxic, preferring temperatures of 40° to 50°C. Some individuals remained at 50°C for 7 hours (the duration of the experiment), whereas others endured exposure to 55°C for over 15 minutes, demonstrating that alvinellids prefer high temperatures and are among the most thermotolerant of marine organisms.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2006
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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