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  • 1
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2019
    In:  Proceedings of the National Academy of Sciences Vol. 116, No. 18 ( 2019-04-30), p. 9078-9083
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 116, No. 18 ( 2019-04-30), p. 9078-9083
    Abstract: Major depressive disorder (MDD) is common and disabling, but its neuropathophysiology remains unclear. Most studies of functional brain networks in MDD have had limited statistical power and data analysis approaches have varied widely. The REST-meta-MDD Project of resting-state fMRI (R-fMRI) addresses these issues. Twenty-five research groups in China established the REST-meta-MDD Consortium by contributing R-fMRI data from 1,300 patients with MDD and 1,128 normal controls (NCs). Data were preprocessed locally with a standardized protocol before aggregated group analyses. We focused on functional connectivity (FC) within the default mode network (DMN), frequently reported to be increased in MDD. Instead, we found decreased DMN FC when we compared 848 patients with MDD to 794 NCs from 17 sites after data exclusion. We found FC reduction only in recurrent MDD, not in first-episode drug-naïve MDD. Decreased DMN FC was associated with medication usage but not with MDD duration. DMN FC was also positively related to symptom severity but only in recurrent MDD. Exploratory analyses also revealed alterations in FC of visual, sensory-motor, and dorsal attention networks in MDD. We confirmed the key role of DMN in MDD but found reduced rather than increased FC within the DMN. Future studies should test whether decreased DMN FC mediates response to treatment. All R-fMRI indices of data contributed by the REST-meta-MDD consortium are being shared publicly via the R-fMRI Maps Project.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2019
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  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 378, No. 6616 ( 2022-10-14)
    Abstract: Pyroptosis is a proinflammatory form of programmed cell death characterized by membrane pore formation that allows the release of intracellular inflammatory mediators, a process that is elicited by the inflammasome-mediated cleavage and activation of gasdermin D (GSDMD). Growing evidence supports a critical role for pyroptosis in the control of infections by mammalian hosts, but how pathogens evade this immune response remains largely unexplored. RATIONALE Mycobacterium tuberculosis (Mtb), an ancient pathogen that causes tuberculosis (TB), has developed numerous intracellular survival strategies to evade host immunity and to drive the occurrence and development of TB. One notable feature evolved by Mtb is a set of eukaryotic-like effectors, but their host targets and regulatory roles in pathogen–host interactions remain largely unclear. In this study, we sought to identify the key pathogenic regulators of inflammasome-pyroptosis pathways from Mtb eukaryotic-like effectors, information that could improve our understanding of TB pathogenesis and provide potential targets for novel anti-TB treatment. RESULTS We examined the whole genome of Mtb to predict its secreted eukaryotic-like proteins possessing eukaryotic-like motifs or domains that might target host factors directly. These Mtb effector proteins were then subjected to further experimental analyses using an inflammasome reconstitution system for screening inhibitors of inflammasome-pyroptosis pathways. Out of 201 predicted Mtb-secreted eukaryotic proteins, six Mtb proteins (Rv0153c, Rv0561c, Rv0824c, Rv0861c, Rv1515c, and Rv1679) exhibited strong inhibitory effects on both NOD-like receptor protein 3 (NLRP3) and absent in melanoma 2 (AIM2) inflammasome pathways. Among these proteins, PtpB (i.e., Rv0153c) was most abundantly secreted by Mtb during infection. We thus focused on PtpB and further confirmed its inhibitory effect on AIM2 or NLRP3 inflammasome-mediated interleukin-1β (IL-1β) secretion. Subsequent experiments demonstrated that PtpB inhibited gasdermin D (GSDMD)–dependent cytokine release and pyroptosis to promote Mtb intracellular survival in macrophages. Mechanistically, Mtb-secreted PtpB could target and dephosphorylate host plasma membrane phosphatidylinositol-4-monophosphate (PI4P) and phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P 2 ] to inhibit the membrane localization of the N-terminal cleavage fragment of GSDMD (GSDMD-N), thus preventing GSDMD-mediated immune responses. This phosphoinositide phosphatase activity requires binding of PtpB to ubiquitin. Accordingly, disrupting phospholipid phosphatase activity or the unusual ubiquitin-interacting motif (UIM)–like domain of PtpB markedly enhanced host innate immune responses and reduced intracellular pathogen survival in mice in a GSDMD-dependent manner. CONCLUSION We demonstrate that GSDMD-mediated pyroptosis and inflammatory cytokine release play a critical role in host anti-infection immunity, which is counteracted by Mtb effector protein PtpB. Our data reveal a role of the pathogen-derived phospholipid phosphatase in the regulation of GSDMD-dependent pyroptosis and cytokine releases, extending our understanding of the elaborate regulatory mechanism of cellular inflammasome-pyroptosis signaling pathways during pathogen infection. The present study also presents a strategy by which pathogens hijack ubiquitin to inhibit host pyroptosis by altering the phospholipid composition of the host membrane. Our discovery of the PtpB UIM-like domain, which is not homologous to any human protein, may provide potential selectivity for the development of anti-TB therapies. M. tuberculosis PtpB hijacks host ubiquitin to inhibit pyroptosis through altering host membrane phospholipid composition. M. tuberculosis –secreted phospholipid phosphatase PtpB is activated by interacting with host ubiquitin through a UIM-like domain, by which it dephosphorylates host plasma membrane phosphoinositides PI4P and PI(4,5)P 2 to inhibit the membrane targeting of GSDMD-N, thus disrupting the inflammatory cytokine release and pyroptosis upon activation of M. tuberculosis infection–triggered inflammasome activation in macrophages.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
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    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
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  • 3
    In: Nature, Springer Science and Business Media LLC, Vol. 589, No. 7842 ( 2021-01-21), p. E4-E4
    Abstract: A Correction to this paper has been published: https://doi.org/10.1038/s41586-020-03089-4.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2021
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  • 4
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2010
    In:  Proceedings of the National Academy of Sciences Vol. 107, No. 29 ( 2010-07-20), p. 13117-13122
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 107, No. 29 ( 2010-07-20), p. 13117-13122
    Abstract: Morphine-induced analgesia and antinociceptive tolerance are known to be modulated by interaction between δ-opioid receptors (DORs) and μ-opioid receptors (MORs) in the pain pathway. However, evidence for expression of DORs in nociceptive small-diameter neurons in dorsal root ganglia (DRG) and for coexistence of DORs with MORs and neuropeptides has recently been challenged. We now report, using in situ hybridization, single-cell PCR, and immunostaining, that DORs are widely expressed not only in large DRG neurons but in small ones and coexist with MORs in peptidergic small DRG neurons, with protachykinin-dependent localization in large dense-core vesicles. Importantly, both DOR and MOR agonists reduce depolarization-induced Ca 2+ currents in single small DRG neurons and inhibit afferent C-fiber synaptic transmission in the dorsal spinal cord. Thus, coexistence of DORs and MORs in small DRG neurons is a basis for direct interaction of opioid receptors in modulation of nociceptive afferent transmission and opioid analgesia.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2010
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  • 5
    In: Nature, Springer Science and Business Media LLC, Vol. 513, No. 7517 ( 2014-09-11), p. 251-255
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2014
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  • 6
    In: Nature, Springer Science and Business Media LLC, Vol. 560, No. 7719 ( 2018-8), p. 484-488
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2018
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  • 7
    Online Resource
    Online Resource
    Proceedings of the National Academy of Sciences ; 2019
    In:  Proceedings of the National Academy of Sciences Vol. 116, No. 27 ( 2019-07-02), p. 13404-13413
    In: Proceedings of the National Academy of Sciences, Proceedings of the National Academy of Sciences, Vol. 116, No. 27 ( 2019-07-02), p. 13404-13413
    Abstract: BRUCE/Apollon is a membrane-associated inhibitor of apoptosis protein that is essential for viability and has ubiquitin-conjugating activity. On initiation of apoptosis, the ubiquitin ligase Nrdp1/RNF41 promotes proteasomal degradation of BRUCE. Here we demonstrate that BRUCE together with the proteasome activator PA28γ causes proteasomal degradation of LC3-I and thus inhibits autophagy. LC3-I on the phagophore membrane is conjugated to phosphatidylethanolamine to form LC3-II, which is required for the formation of autophagosomes and selective recruitment of substrates. SIP/CacyBP is a ubiquitination-related protein that is highly expressed in neurons and various tumors. Under normal conditions, SIP inhibits the ubiquitination and degradation of BRUCE, probably by blocking the binding of Nrdp1 to BRUCE. On DNA damage by topoisomerase inhibitors, Nrdp1 causes monoubiquitination of SIP and thus promotes apoptosis. However, on starvation, SIP together with Rab8 enhances the translocation of BRUCE into the recycling endosome, formation of autophagosomes, and degradation of BRUCE by optineurin-mediated autophagy. Accordingly, deletion of SIP in cultured cells reduces the autophagic degradation of damaged mitochondria and cytosolic protein aggregates. Thus, by stimulating proteasomal degradation of LC3-I, BRUCE also inhibits autophagy. Conversely, SIP promotes autophagy by blocking BRUCE-dependent degradation of LC3-I and by enhancing autophagosome formation and autophagic destruction of BRUCE. These actions of BRUCE and SIP represent mechanisms that link the regulation of autophagy and apoptosis under different conditions.
    Type of Medium: Online Resource
    ISSN: 0027-8424 , 1091-6490
    RVK:
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    Language: English
    Publisher: Proceedings of the National Academy of Sciences
    Publication Date: 2019
    detail.hit.zdb_id: 209104-5
    detail.hit.zdb_id: 1461794-8
    SSG: 11
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  • 8
    In: Nature, Springer Science and Business Media LLC, Vol. 583, No. 7818 ( 2020-07-30), p. 744-751
    Abstract: The Encyclopedia of DNA Elements (ENCODE) project has established a genomic resource for mammalian development, profiling a diverse panel of mouse tissues at 8 developmental stages from 10.5 days after conception until birth, including transcriptomes, methylomes and chromatin states. Here we systematically examined the state and accessibility of chromatin in the developing mouse fetus. In total we performed 1,128 chromatin immunoprecipitation with sequencing (ChIP–seq) assays for histone modifications and 132 assay for transposase-accessible chromatin using sequencing (ATAC–seq) assays for chromatin accessibility across 72 distinct tissue-stages. We used integrative analysis to develop a unified set of chromatin state annotations, infer the identities of dynamic enhancers and key transcriptional regulators, and characterize the relationship between chromatin state and accessibility during developmental gene regulation. We also leveraged these data to link enhancers to putative target genes and demonstrate tissue-specific enrichments of sequence variants associated with disease in humans. The mouse ENCODE data sets provide a compendium of resources for biomedical researchers and achieve, to our knowledge, the most comprehensive view of chromatin dynamics during mammalian fetal development to date.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
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  • 9
    In: Nature, Springer Science and Business Media LLC, Vol. 586, No. 7831 ( 2020-10-29), p. E31-E31
    Abstract: An amendment to this paper has been published and can be accessed via a link at the top of the paper.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2020
    detail.hit.zdb_id: 120714-3
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    SSG: 11
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  • 10
    Online Resource
    Online Resource
    Springer Science and Business Media LLC ; 2023
    In:  Nature Vol. 613, No. 7943 ( 2023-01-12), p. 280-286
    In: Nature, Springer Science and Business Media LLC, Vol. 613, No. 7943 ( 2023-01-12), p. 280-286
    Abstract: Macroscopic electric motors continue to have a large impact on almost every aspect of modern society. Consequently, the effort towards developing molecular motors 1–3 that can be driven by electricity could not be more timely. Here we describe an electric molecular motor based on a [3]catenane 4,5 , in which two cyclobis(paraquat- p -phenylene) 6 (CBPQT 4+ ) rings are powered by electricity in solution to circumrotate unidirectionally around a 50-membered loop. The constitution of the loop ensures that both rings undergo highly (85%) unidirectional movement under the guidance of a flashing energy ratchet 7,8 , whereas the interactions between the two rings give rise to a two-dimensional potential energy surface (PES) similar to that shown by F O F 1 ATP synthase 9 . The unidirectionality is powered by an oscillating 10 voltage 11,12 or external modulation of the redox potential 13 . Initially, we focused our attention on the homologous [2]catenane, only to find that the kinetic asymmetry was insufficient to support unidirectional movement of the sole ring. Accordingly, we incorporated a second CBPQT 4+ ring to provide further symmetry breaking by interactions between the two mobile rings. This demonstration of electrically driven continual circumrotatory motion of two rings around a loop in a [3]catenane is free from the production of waste products and represents an important step towards surface-bound 14 electric molecular motors.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
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    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
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