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  • Microbiology Society  (11)
  • Biodiversity Research  (11)
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  • 1
    Online Resource
    Online Resource
    Microbiology Society ; 2018
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 68, No. 6 ( 2018-06-01), p. 1902-1906
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 68, No. 6 ( 2018-06-01), p. 1902-1906
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2018
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Microbiology Society ; 2009
    In:  Microbiology Vol. 155, No. 11 ( 2009-11-01), p. 3622-3631
    In: Microbiology, Microbiology Society, Vol. 155, No. 11 ( 2009-11-01), p. 3622-3631
    Abstract: OmpR has been demonstrated to negatively regulate the expression of the flagellar master operon flhDC in a wide variety of bacterial species. Here we report the positive regulation of flhDC expression by OmpR in Yersinia pseudotuberculosis . A σ 70 -dependent promoter was identified by primer extension analysis and an active region with two conserved OmpR-binding sites around the flhDC promoter was confirmed. To confirm the regulation of flhDC expression by OmpR, flhDC as well as the downstream flagellar genes fliA , flgD , flgA , flgM , fliC and flaA were fused to lacZ , and decreased expression of all these genes in an ompR mutant (Δ ompR ) was detected. Furthermore, Δ ompR was defective in bacterial motility and flagella synthesis. This defect was due to the low level of expression of flhDC in Δ ompR since overproduction of FlhDC in Δ ompR restored bacterial motility. The importance of two conserved OmpR-binding sites around the flhDC promoter region in the regulation of flhDC expression by OmpR was demonstrated by the fact that mutation of either one or both sites significantly decreased the promoter activity in the wild-type but not in Δ ompR . The binding of OmpR to these two sites was also demonstrated by DNA mobility shift assay. The possible mechanism underlying this positive regulation in Y. pseudotuberculosis is discussed. To our knowledge, this is the first report to demonstrate that OmpR positively regulates flhDC expression.
    Type of Medium: Online Resource
    ISSN: 1350-0872 , 1465-2080
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2009
    detail.hit.zdb_id: 2008736-6
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Microbiology Society ; 2021
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 71, No. 12 ( 2021-12-15)
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 12 ( 2021-12-15)
    Abstract: A Gram-stain-positive, facultatively anaerobic, non-motile, endospore-forming and rod-shaped bacterium, occurring singly or in pairs, designated TB2019 T , was isolated from environmental monitoring samples of corridor air collected at the Tianjin Institute for Drug Control, Tianjin Province (PR China). The isolate was able to grow at 15–40 °C (optimum growth at 37 °C), pH 6.0–8.0 (pH 7.0) and in the presence of 0–2% (w/v) NaCl (0% NaCl). Comparison of 16S rRNA gene sequences indicated that TB2019 T was most closely related to Paenibacillus typhae CGMCC 1.11012 T (98.63%), Paenibacillus albidus Q4-3 T (98.19%), Paenibacillus borealis DSM 13188 T (97.55%), Paenibacillus helianthi P26E T (97.33%) and Paenibacillus odorifer DSM 15391 T (97.19%). The digital DNA–DNA hybridization and the average nucleotide identity values between TB2019 T and the five type strains mentioned above ranged from 20.7 to 25.0% and 75.2 to 81.3%, respectively, and the genomic DNA G+C content was 49.52 mol%. The diagnostic cell-wall sugar was ribose, and the diagnostic amino acid was meso -diaminopimelic acid. The polar lipids of TB2019 T included diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, three unidentified aminophospholipids and one unidentified phospholipid. MK-7 was the predominant menaquinone, and anteiso-C 15:0 (30.6%) was the major fatty acid. Based on the polyphasic taxonomic data, strain TB2019 T represents a novel species of the genus Paenibacillus , for which the name Paenibacillus tianjinensis sp. nov. is proposed. The type strain is TB2019 T (=CICC 25065 T =JCM 34610 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2021
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 4
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 12 ( 2021-12-16)
    Abstract: A novel Gram-stain-positive, strictly anaerobic, elliptical, non-motile and non-flagellated bacterium, designed LZLJ-2 T , was isolated from the mud in a fermentation cellar used for the production of Chinese Luzhou-flavour Baijiu. Growth occurred at 28–45 °C (optimum, 37 °C), at pH 6.0–7.0 (optimum, pH 6.0) and with concentrations of NaCl up to 2 % (w/v; optimum, 0 %). On the basis of 16S rRNA gene sequence similarity, strain LZLJ-2 T belonged to the genus Thermophilibacter and was most closely related to Thermophilibacter mediterraneus Marseille-P3256 T (similarity 96.9 %), Olsenella gallinarum ClaCZ62 T (similarity 96.6 %) and Thermophilibacter provencensis Marseille-P2912 T (similarity 96.4 %). In addition, strain LZLJ-2 T had high similarity to the genus Olsenella , including Olsenella profusa DSM 13989 T (similarity 94.9 %), Olsenella umbonata DSM 22620 T (similarity 94.9 %), Olsenella uli ATCC 49627 T (similarity 94.22 %), Tractidigestivibacter scatoligenes DSM 28304 T (similarity 93.9 %) and Paratractidigestivibacter faecalis KCTC 15699 T (similarity 93.25 %). Comparative genome analysis showed that orthoANI values between strain LZLJ-2 T and Thermophilibacter mediterraneus Marseille-P3256 T , Olsenella gallinarum ClaCZ62 T , Thermophilibacter provencensis Marseille-P2912 T , Olsenella profusa DSM 13989 T , Olsenella umbonata DSM 22620 T , Olsenella uli ATCC 49627 T , Tractidigestivibacter scatoligenes DSM 28304 T and Paratractidigestivibacter faecalis KCTC 15699 T were 78.68, 78.99, 78.29, 73.40, 74.00, 74.30, 75.08 and 77.23 %, and the genome-to-genome distance values were respectively 22.3, 22.5, 22.4, 19.6, 20.5, 19.7, 20.5 and 21.5 %. The genomic DNA G+C content of strain LZLJ-2 T was 65.21 mol%. The predominant cellular fatty acids ( 〉 10 %) of strain LZLJ-2 T were C 18 : 1 cis 9 (33.7 %), C 14 : 0 (22.0 %) and C 18 : 1 cis 9 DMA (13.5 %). d -Glucose, sucrose, mannose, maltose, lactose (weak), salicin, glycerol (weak), cellobiose and trehalose (weak) could be used by strain LZLJ-2 T as sole carbon sources. Enzyme activity results showed positive reactions with valine arylamidase, leucine arylamidase, crystine arylamidase, acid phosphatase, alkaline phosphatase, esterase (C4) (weakly positive), naphthol-AS-BI-phosphohydrolase, α -glucosidase and β -glucosidase. The major end products of glucose fermentation were lactic acid and acetic acid. It produced skatole from indole acetic acid, and produced p -cresol from modified peptone–yeast extract medium with glucose. Based on the 16S rRNA gene trees as well as the genome core gene tree, it is suggested that Olsenella gallinarum are transferred to genus Thermophilibacter as Thermophilibacter gallinarum comb. nov. Based on phenotypic, genotypic and phylogenetic data, strain LZLJ-2 T is considered to represent a novel species of the genus Thermophilibacter , for which the name Thermophilibacter immobilis sp. nov. is proposed. The type strain is LZLJ-2 T (=KCTC 25162 T =JCM 34224 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2021
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 5
    Online Resource
    Online Resource
    Microbiology Society ; 2016
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 66, No. 9 ( 2016-09-01), p. 3317-3323
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 66, No. 9 ( 2016-09-01), p. 3317-3323
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2016
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 6
    Online Resource
    Online Resource
    Microbiology Society ; 2017
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 67, No. 5 ( 2017-05-01), p. 1546-1550
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 67, No. 5 ( 2017-05-01), p. 1546-1550
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 7
    Online Resource
    Online Resource
    Microbiology Society ; 2017
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 67, No. 9 ( 2017-09-01), p. 3150-3155
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 67, No. 9 ( 2017-09-01), p. 3150-3155
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 8
    In: Journal of General Virology, Microbiology Society, Vol. 98, No. 6 ( 2017-06-01), p. 1410-1421
    Type of Medium: Online Resource
    ISSN: 0022-1317 , 1465-2099
    RVK:
    RVK:
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 2007065-2
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Microbiology Society ; 2009
    In:  Microbiology Vol. 155, No. 8 ( 2009-08-01), p. 2522-2531
    In: Microbiology, Microbiology Society, Vol. 155, No. 8 ( 2009-08-01), p. 2522-2531
    Abstract: Yersinia pseudotuberculosis is an enteric bacterium which must overcome the acidic stress in host organs for successful colonization, but how this bacterium survives in acidic conditions remains largely unknown. In the present study, the importance of OmpR in acid survival of Y. pseudotuberculosis YpIII was confirmed by the fact that mutation of ompR (strain Δ ompR ) greatly reduced cell survival at pH 4.5 or lower. To characterize the regulatory role of OmpR in this acid survival process, proteomic analysis was carried out to compare YpIII at pH 7.0 and pH 4.5 with Δ ompR at pH 7.0, and urease components were revealed to be the main targets for OmpR regulation. Addition of urea to the culture medium also enhanced acid survival of YpIII but not Δ ompR and urease activity was significantly induced by acid in YpIII but not in Δ ompR . Each of the seven components of the YpIII urease gene cluster was fused to a lacZ reporter and their expression was dramatically decreased in a Δ ompR background; this supports the notion that OmpR positively regulates urease expression. Furthermore, gel shift analysis revealed that OmpR binds to the deduced promoter regions of three polycistronic transcriptional units ( ureABC , ureEF and ureGD ) in the urease cluster, suggesting that the regulation of OmpR to urease components is direct. Taken together, these data strongly suggest that OmpR activates urease expression to enhance acid survival in Y. pseudotuberculosis .
    Type of Medium: Online Resource
    ISSN: 1350-0872 , 1465-2080
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2009
    detail.hit.zdb_id: 2008736-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 10
    Online Resource
    Online Resource
    Microbiology Society ; 2010
    In:  Microbiology Vol. 156, No. 1 ( 2010-01-01), p. 60-71
    In: Microbiology, Microbiology Society, Vol. 156, No. 1 ( 2010-01-01), p. 60-71
    Abstract: A unique d -to- l racemization of arginine by coupled arginine dehydrogenases DauA and DauB encoded by the dauBAR operon has been recently reported as a prerequisite for d -arginine utilization as the sole source of carbon and nitrogen through l -arginine catabolic pathways in P. aeruginosa . In this study, enzymic properties of the catabolic FAD-dependent d -amino acid dehydrogenase DauA and the physiological functions of the dauBAR operon were further characterized with other d -amino acids. These results establish DauA as a d -amino acid dehydrogenase of broad substrate specificity, with d -Arg and d -Lys as the two most effective substrates, based on the kinetic parameters. In addition, expression of dauBAR is specifically induced by exogenous d -Arg and d -Lys, and mutations in the dauBAR operon affect utilization of these two amino acids alone. The function of DauR as a repressor in the control of the dauBAR operon was demonstrated by dauB promoter activity measurements in vivo and mobility shift assays with purified His-tagged protein in vitro . The potential effect of 2-ketoarginine (2-KA) derived from d -Arg deamination by DauA as a signal molecule in dauBAR induction was first revealed by mutation analysis and further supported by its in vitro effect on alleviation of DauR–DNA interactions. Through sequence analysis, putative DauR operators were identified and confirmed by mutation analysis. Induction of the dauBAR operon to the maximal level was found to require the l -arginine-responsive regulator ArgR, as supported by the loss of inductive effect by l -Arg on dauBAR expression in the argR mutant and binding of purified ArgR to the dauB regulatory region in vitro . In summary, this study establishes that optimal induction of the dauBAR operon requires relief of DauR repression by 2-KA and activation of ArgR by l -Arg as a result of d -Arg racemization by the encoded DauA and DauB.
    Type of Medium: Online Resource
    ISSN: 1350-0872 , 1465-2080
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2010
    detail.hit.zdb_id: 2008736-6
    SSG: 12
    Location Call Number Limitation Availability
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