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  • American Association for the Advancement of Science (AAAS)  (9)
  • 2020-2024  (9)
  • Biodiversity Research  (9)
  • Biology  (9)
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  • American Association for the Advancement of Science (AAAS)  (9)
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  • 2020-2024  (9)
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  • 1
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2022
    In:  Science Vol. 375, No. 6584 ( 2022-03-04), p. 1048-1053
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 375, No. 6584 ( 2022-03-04), p. 1048-1053
    Abstract: Omicron spike structures reveal the mechanism of immune evasion and provide a basis for antibody drug discovery.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2022
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    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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  • 2
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 373, No. 6553 ( 2021-07-23), p. 413-419
    Abstract: Adenosine monophosphate (AMP)–activated protein kinase (AMPK) regulates metabolism in response to the cellular energy states. Under energy stress, AMP stabilizes the active AMPK conformation, in which the kinase activation loop (AL) is protected from protein phosphatases, thus keeping the AL in its active, phosphorylated state. At low AMP:ATP (adenosine triphosphate) ratios, ATP inhibits AMPK by increasing AL dynamics and accessibility. We developed conformation-specific antibodies to trap ATP-bound AMPK in a fully inactive, dynamic state and determined its structure at 3.5-angstrom resolution using cryo–electron microscopy. A 180° rotation and 100-angstrom displacement of the kinase domain fully exposes the AL. On the basis of the structure and supporting biophysical data, we propose a multistep mechanism explaining how adenine nucleotides and pharmacological agonists modulate AMPK activity by altering AL phosphorylation and accessibility.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2021
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 3
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 368, No. 6498 ( 2020-06-26), p. 1499-1504
    Abstract: The pandemic of coronavirus disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has become a global crisis. Replication of SARS-CoV-2 requires the viral RNA-dependent RNA polymerase (RdRp) enzyme, a target of the antiviral drug remdesivir. Here we report the cryo–electron microscopy structure of the SARS-CoV-2 RdRp, both in the apo form at 2.8-angstrom resolution and in complex with a 50-base template-primer RNA and remdesivir at 2.5-angstrom resolution. The complex structure reveals that the partial double-stranded RNA template is inserted into the central channel of the RdRp, where remdesivir is covalently incorporated into the primer strand at the first replicated base pair, and terminates chain elongation. Our structures provide insights into the mechanism of viral RNA replication and a rational template for drug design to combat the viral infection.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 4
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 380, No. 6640 ( 2023-04-07)
    Abstract: Hormones regulate most aspects of human physiology and are generally divided into four groups: protein and peptides, monoamines, steroids, and free fatty acids (FAs). Unsaturated FAs, those with C–C double bonds, exert physiological functions through engagement with membrane receptors, many of which are G protein–coupled receptors (GPCRs). Omega-3 (ω-3) FAs, which are a main component of fish oil, bind to the receptor GPR120, which mediates insulin sensitization, stimulates glucagon-like peptide 1 (GLP-1) secretion, and controls adipogenesis and anti-inflammatory effects through coupling to distinct downstream effectors, including the guanine nucleotide–binding (G) proteins G s , G i , and G q and β-arrestins. The association of the p.R270H missense mutation of GPR120 in obesity suggests therapeutic potential for GPR120 in the treatment of metabolic diseases. RATIONALE How natural fatty acid hormones—which are amphipathic molecules, distinguished mainly by number and position of double bonds—interact with GPCRs such as GPR120 has been unclear. Both saturated and unsaturated FAs are able to activate GPR120, but only certain unsaturated FAs are beneficial for metabolism. It is therefore important to understand whether GPR120 can recognize selective double-bond decorations in FAs and, if so, translate binding to specific biological signaling pathways, including different G protein subtypes and arrestins. The lack of GPCR structures in complex with natural fatty acid hormones and downstream effectors has hampered our understanding of double-bond recognition, which is one challenge in developing therapeutics that might act through this receptor. RESULTS By profiling G protein and arrestin activities of GPR120 stimulated by saturated and unsaturated endogenous FAs or the synthetic compound TUG891, we found that these molecules exhibited different biased signaling properties. In particular, only the beneficial ω-3 FAs were able to activate G s signaling. We determined six cryo–electron microscopy (cryo-EM) structures of GPR120-G i /G iq with 9-hydroxystearic acid (9-HSA), linoleic acid (LA), oleic acid (OA), the natural agonist ω-3 eicosapentaenoic acid (EPA), and the synthetic agonist TUG891. All fatty acid hormones and TUG891 assumed an overall “L” configuration and were buried inside the seven-transmembrane (7TM) helix bundle of the receptor. Through structural and mutational analysis, biochemical characterization, and molecular simulations, we identified aromatic residues in the ligand pocket of GPR120 that specifically recognize the C–C double bonds present in unsaturated FAs through π:π interactions and translate this recognition into different signaling outcomes. A propagating path connects the double-bond recognition of GPR120 inside the ligand pocket of the cytoplasmic side, and common and distinct features of G s and G q coupling interfaces were investigated. We also analyzed the structural basis for selectivity of TUG891 toward GPR120 and a disease-associated single-nucleotide polymorphism of GPR120. The separation of TUG891 into two regions by a linker oxygen suggests that fragment-based drug design could be exploited for GPR120 ligand design. CONCLUSION Our cryo-EM structures reveal how fatty acid hormones bind the orthosteric site within the 7TM domain of GPCRs and how specific aromatic residues inside the ligand pocket recognize the C–C double bonds. We also investigated mechanisms underlying signaling bias of GPR120 in response to various ligands. This work will serve as a foundation for the development of molecules that bind and activate GPR120 for potential therapeutic uses as well as to better understand how ligand-induced conformational changes bias signaling outcomes in GPRCs. Fish oil membrane receptor GPR120 recognizes different unsaturated FAs and couples to distinct downstream effectors. The membrane receptor GPR120 specifically recognizes the C–C double bonds present in unsaturated FAs, such as those in the ω-3 FAs found in fish oil, through π:π interactions. The interaction patterns of different FAs or ligands inside of the ligand pocket of GPR120 are translated into different signaling outcomes via distinct propagating paths. GLUT4, glucose transporter member 4; cAMP, cyclic adenosine monophosphate; TAK1, transforming growth factor-β–activated kinase 1; NLRP3, NLR family pyrin domain containing 3.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2023
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    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
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  • 5
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 370, No. 6521 ( 2020-12-04)
    Abstract: The COVID-19 pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a grave threat to public health and the global economy. SARS-CoV-2 is closely related to the more lethal but less transmissible coronaviruses SARS-CoV-1 and Middle East respiratory syndrome coronavirus (MERS-CoV). Here, we have carried out comparative viral-human protein-protein interaction and viral protein localization analyses for all three viruses. Subsequent functional genetic screening identified host factors that functionally impinge on coronavirus proliferation, including Tom70, a mitochondrial chaperone protein that interacts with both SARS-CoV-1 and SARS-CoV-2 ORF9b, an interaction we structurally characterized using cryo–electron microscopy. Combining genetically validated host factors with both COVID-19 patient genetic data and medical billing records identified molecular mechanisms and potential drug treatments that merit further molecular and clinical study.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 6
    Online Resource
    Online Resource
    American Association for the Advancement of Science (AAAS) ; 2020
    In:  Science Vol. 369, No. 6507 ( 2020-08-28), p. 1106-1109
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 369, No. 6507 ( 2020-08-28), p. 1106-1109
    Abstract: Studies of novel coronavirus disease 2019 (COVID-19), which is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), have reported varying estimates of epidemiological parameters, including serial interval distributions—i.e., the time between illness onset in successive cases in a transmission chain—and reproduction numbers. By compiling a line-list database of transmission pairs in mainland China, we show that mean serial intervals of COVID-19 shortened substantially from 7.8 to 2.6 days within a month (9 January to 13 February 2020). This change was driven by enhanced nonpharmaceutical interventions, particularly case isolation. We also show that using real-time estimation of serial intervals allowing for variation over time provides more accurate estimates of reproduction numbers than using conventionally fixed serial interval distributions. These findings could improve our ability to assess transmission dynamics, forecast future incidence, and estimate the impact of control measures.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 7
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 367, No. 6481 ( 2020-02-28)
    Abstract: CRISPR-Cas9 gene editing provides a powerful tool to enhance the natural ability of human T cells to fight cancer. We report a first-in-human phase 1 clinical trial to test the safety and feasibility of multiplex CRISPR-Cas9 editing to engineer T cells in three patients with refractory cancer. Two genes encoding the endogenous T cell receptor (TCR) chains, TCRα ( TRAC ) and TCRβ ( TRBC ), were deleted in T cells to reduce TCR mispairing and to enhance the expression of a synthetic, cancer-specific TCR transgene (NY-ESO-1). Removal of a third gene encoding programmed cell death protein 1 (PD-1; PDCD1 ), was performed to improve antitumor immunity. Adoptive transfer of engineered T cells into patients resulted in durable engraftment with edits at all three genomic loci. Although chromosomal translocations were detected, the frequency decreased over time. Modified T cells persisted for up to 9 months, suggesting that immunogenicity is minimal under these conditions and demonstrating the feasibility of CRISPR gene editing for cancer immunotherapy.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 8
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 370, No. 6520 ( 2020-11-27)
    Abstract: Understanding humoral responses to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is critical for improving diagnostics, therapeutics, and vaccines. Deep serological profiling of 232 coronavirus disease 2019 (COVID-19) patients and 190 pre–COVID-19 era controls using VirScan revealed more than 800 epitopes in the SARS-CoV-2 proteome, including 10 epitopes likely recognized by neutralizing antibodies. Preexisting antibodies in controls recognized SARS-CoV-2 ORF1, whereas only COVID-19 patient antibodies primarily recognized spike protein and nucleoprotein. A machine learning model trained on VirScan data predicted SARS-CoV-2 exposure history with 99% sensitivity and 98% specificity; a rapid Luminex-based diagnostic was developed from the most discriminatory SARS-CoV-2 peptides. Individuals with more severe COVID-19 exhibited stronger and broader SARS-CoV-2 responses, weaker antibody responses to prior infections, and higher incidence of cytomegalovirus and herpes simplex virus 1, possibly influenced by demographic covariates. Among hospitalized patients, males produce stronger SARS-CoV-2 antibody responses than females.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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  • 9
    In: Science, American Association for the Advancement of Science (AAAS), Vol. 367, No. 6475 ( 2020-01-17)
    Abstract: Within cells, the spatial compartmentalization of thousands of distinct proteins serves a multitude of diverse biochemical needs. Correlative super-resolution (SR) fluorescence and electron microscopy (EM) can elucidate protein spatial relationships to global ultrastructure, but has suffered from tradeoffs of structure preservation, fluorescence retention, resolution, and field of view. We developed a platform for three-dimensional cryogenic SR and focused ion beam–milled block-face EM across entire vitreously frozen cells. The approach preserves ultrastructure while enabling independent SR and EM workflow optimization. We discovered unexpected protein-ultrastructure relationships in mammalian cells including intranuclear vesicles containing endoplasmic reticulum–associated proteins, web-like adhesions between cultured neurons, and chromatin domains subclassified on the basis of transcriptional activity. Our findings illustrate the value of a comprehensive multimodal view of ultrastructural variability across whole cells.
    Type of Medium: Online Resource
    ISSN: 0036-8075 , 1095-9203
    RVK:
    RVK:
    Language: English
    Publisher: American Association for the Advancement of Science (AAAS)
    Publication Date: 2020
    detail.hit.zdb_id: 128410-1
    detail.hit.zdb_id: 2066996-3
    detail.hit.zdb_id: 2060783-0
    SSG: 11
    Location Call Number Limitation Availability
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