GLORIA

GEOMAR Library Ocean Research Information Access

Your email was sent successfully. Check your inbox.

An error occurred while sending the email. Please try again.

Proceed reservation?

Export
  • 1
    In: Nature, Springer Science and Business Media LLC, Vol. 609, No. 7928 ( 2022-09-22), p. 754-760
    Abstract: Identifying the host genetic factors underlying severe COVID-19 is an emerging challenge 1–5 . Here we conducted a genome-wide association study (GWAS) involving 2,393 cases of COVID-19 in a cohort of Japanese individuals collected during the initial waves of the pandemic, with 3,289 unaffected controls. We identified a variant on chromosome 5 at 5q35 (rs60200309-A), close to the dedicator of cytokinesis 2 gene ( DOCK2 ), which was associated with severe COVID-19 in patients less than 65 years of age. This risk allele was prevalent in East Asian individuals but rare in Europeans, highlighting the value of genome-wide association studies in non-European populations. RNA-sequencing analysis of 473 bulk peripheral blood samples identified decreased expression of DOCK2 associated with the risk allele in these younger patients. DOCK2 expression was suppressed in patients with severe cases of COVID-19. Single-cell RNA-sequencing analysis ( n  = 61 individuals) identified cell-type-specific downregulation of DOCK2 and a COVID-19-specific decreasing effect of the risk allele on DOCK2 expression in non-classical monocytes. Immunohistochemistry of lung specimens from patients with severe COVID-19 pneumonia showed suppressed DOCK2 expression. Moreover, inhibition of DOCK2 function with CPYPP increased the severity of pneumonia in a Syrian hamster model of SARS-CoV-2 infection, characterized by weight loss, lung oedema, enhanced viral loads, impaired macrophage recruitment and dysregulated type I interferon responses. We conclude that DOCK2 has an important role in the host immune response to SARS-CoV-2 infection and the development of severe COVID-19, and could be further explored as a potential biomarker and/or therapeutic target.
    Type of Medium: Online Resource
    ISSN: 0028-0836 , 1476-4687
    RVK:
    RVK:
    RVK:
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2022
    detail.hit.zdb_id: 120714-3
    detail.hit.zdb_id: 1413423-8
    SSG: 11
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 2
    In: Nature Genetics, Springer Science and Business Media LLC, Vol. 55, No. 5 ( 2023-05), p. 753-767
    Abstract: Mechanisms underpinning the dysfunctional immune response in severe acute respiratory syndrome coronavirus 2 infection are elusive. We analyzed single-cell transcriptomes and T and B cell receptors (BCR) of 〉 895,000 peripheral blood mononuclear cells from 73 coronavirus disease 2019 (COVID-19) patients and 75 healthy controls of Japanese ancestry with host genetic data. COVID-19 patients showed a low fraction of nonclassical monocytes (ncMono). We report downregulated cell transitions from classical monocytes to ncMono in COVID-19 with reduced CXCL10 expression in ncMono in severe disease. Cell–cell communication analysis inferred decreased cellular interactions involving ncMono in severe COVID-19. Clonal expansions of BCR were evident in the plasmablasts of patients. Putative disease genes identified by COVID-19 genome-wide association study showed cell type-specific expressions in monocytes and dendritic cells. A COVID-19-associated risk variant at the IFNAR2 locus (rs13050728) had context-specific and monocyte-specific expression quantitative trait loci effects. Our study highlights biological and host genetic involvement of innate immune cells in COVID-19 severity.
    Type of Medium: Online Resource
    ISSN: 1061-4036 , 1546-1718
    RVK:
    Language: English
    Publisher: Springer Science and Business Media LLC
    Publication Date: 2023
    detail.hit.zdb_id: 1494946-5
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 3
    Online Resource
    Online Resource
    Japanese Society for Plant Cell and Molecular Biology ; 2006
    In:  Plant Biotechnology Vol. 23, No. 4 ( 2006), p. 379-385
    In: Plant Biotechnology, Japanese Society for Plant Cell and Molecular Biology, Vol. 23, No. 4 ( 2006), p. 379-385
    Type of Medium: Online Resource
    ISSN: 1347-6114 , 1342-4580
    Language: English
    Publisher: Japanese Society for Plant Cell and Molecular Biology
    Publication Date: 2006
    detail.hit.zdb_id: 2210142-1
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 4
    Online Resource
    Online Resource
    Canadian Science Publishing ; 2020
    In:  Canadian Journal of Fisheries and Aquatic Sciences Vol. 77, No. 6 ( 2020-06), p. 1090-1100
    In: Canadian Journal of Fisheries and Aquatic Sciences, Canadian Science Publishing, Vol. 77, No. 6 ( 2020-06), p. 1090-1100
    Abstract: We studied movement of a native salmonid, white-spotted char (Salvelinus leucomaenis), in a 1-km tributary in northern Hokkaido, Japan, in May–July 2018. Based on physical mark–recapture of 501 unique individuals and detection by mobile PIT antenna over monthly intervals, a majority of fish (70%–80%) stayed within 60 m of previously released locations, demonstrating what appeared to be restricted movement patterns. However, fixed PIT antenna data showed that as much as 17% of marked individuals emigrated from the study area during the 2-month study period. Probability of emigration did not depend on where in the 1-km segment individuals had been released, indicating that emigration likely represented long-distance movement. Once emigrants made a decision to emigrate, they left the tributary within 1–3 median days by moving downstream in a unidirectional manner, based on detections at a total of three antenna arrays deployed throughout the tributary. Our multiscale analysis provided strong support for co-existence of short- and long-distance movement patterns, and we conclude that movement data at multiple spatial scales complement each other to characterize population-scale movement.
    Type of Medium: Online Resource
    ISSN: 0706-652X , 1205-7533
    Language: English
    Publisher: Canadian Science Publishing
    Publication Date: 2020
    detail.hit.zdb_id: 7966-2
    detail.hit.zdb_id: 1473089-3
    SSG: 21,3
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 5
    Online Resource
    Online Resource
    Wiley ; 2022
    In:  Ecology of Freshwater Fish Vol. 31, No. 2 ( 2022-04), p. 317-329
    In: Ecology of Freshwater Fish, Wiley, Vol. 31, No. 2 ( 2022-04), p. 317-329
    Abstract: Movement patterns of stream fish vary individually, but little is known about how a set of individual characteristics affect movement at multiple spatial scales. We investigated the effect of body length and condition (i.e. weight relative to length) on emigration from a tributary and movement within the tributary during summer in Japanese salmonids (white‐spotted charr Salvelinus leucomaenis and masu salmon Oncorhynchus masou ) using mark‐recapture and PIT antenna technology. Emigration from the tributary was influenced more strongly by body length than by body condition, whereas movement within the tributary ( 〉 20 m) was influenced by body condition and their interaction with body length. Specifically, larger individuals in better body condition were more likely to stay locally (≤20 m), but smaller individuals in better condition were more likely to move in the tributary. We discuss benefits and costs of movement that vary with individual characteristics (i.e. body length and condition) and spatial scales. In one instance (charr between June and July), survival rates were lower in smaller individuals, which also were more likely to emigrate from the tributary, suggesting that emigration might have been facilitated by the mortality cost of staying in the tributary. This study indicates that stream fish movement is shaped by complex mechanisms that differ by spatial scale. Although complex, two study species often responded similarly, indicative of emerging regularities across species in determinants of multi‐scale stream fish movement.
    Type of Medium: Online Resource
    ISSN: 0906-6691 , 1600-0633
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2028166-3
    SSG: 21,3
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 6
    In: Biopharmaceutics & Drug Disposition, Wiley, Vol. 36, No. 9 ( 2015-12), p. 636-643
    Abstract: Cynomolgus monkeys are used widely in preclinical studies as non‐human primate species. The amino acid sequence of cynomolgus monkey cytochrome P450 (P450 or CYP) 2C19 is reportedly highly correlated to that of human CYP2C19 (92%) and CYP2C9 (93%). In the present study, 89 commercially available compounds were screened to find potential substrates for cynomolgus monkey CYP2C19. Of 89 drugs, 34 were metabolically depleted by cynomolgus monkey CYP2C19 with relatively high rates. Among them, 30 compounds have been reported as substrates or inhibitors of, either or both, human CYP2C19 and CYP2C9. Several compounds, including loratadine, showed high selectivity to cynomolgus monkey CYP2C19, and all of these have been reported as human CYP2C19 and/or CYP2C9 substrates. In addition, cynomolgus monkey CYP2C19 formed the same loratadine metabolite as human CYP2C19, descarboethoxyloratadine. These results suggest that cynomolgus monkey CYP2C19 is generally similar to human CYP2C19 and CYP2C9 in its substrate recognition functionality. Copyright © 2015 John Wiley & Sons, Ltd.
    Type of Medium: Online Resource
    ISSN: 0142-2782 , 1099-081X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2015
    detail.hit.zdb_id: 1496395-4
    SSG: 12
    SSG: 15,3
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 7
    In: Biopharmaceutics & Drug Disposition, Wiley, Vol. 37, No. 5 ( 2016-07), p. 310-313
    Abstract: Cynomolgus monkeys are widely used in drug developmental stages as non‐human primate models. Previous studies used 89 compounds to investigate species differences associated with cytochrome P450 (P450 or CYP) function that reported monkey specific CYP2C76 cleared 19 chemicals, and homologous CYP2C9 and CYP2C19 metabolized 17 and 30 human CYP2C9 and/or CYP2C19 substrates/inhibitors, respectively. In the present study, 22 compounds selected from viewpoints of global drug interaction guidances and guidelines were further evaluated to seek potential substrates for monkey CYP2C8, which is highly homologous to human CYP2C8 (92%). Amodiaquine, montelukast, quercetin and rosiglitazone, known as substrates or competitive inhibitors of human CYP2C8, were metabolically depleted by recombinant monkey CYP2C8 at relatively high rates. Taken together with our reported findings of the slow eliminations of amodiaquine and montelukast by monkey CYP2C9, CYP2C19 and CYP2C76, the present results suggest that these at least four chemicals may be good marker substrates for monkey CYP2C8. Copyright © 2016 John Wiley & Sons, Ltd.
    Type of Medium: Online Resource
    ISSN: 0142-2782 , 1099-081X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 1496395-4
    SSG: 12
    SSG: 15,3
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 8
    In: Biopharmaceutics & Drug Disposition, Wiley, Vol. 37, No. 4 ( 2016-05), p. 220-232
    Abstract: The microminipig is one of the smallest minipigs that has emerged as a possible experimental animal model, because it shares many anatomical and/or physiological similarities with humans, including the coronary artery distribution in the heart, the digestive physiology, the kidney size and its structure, and so on. However, information on gene expression profiles, including those on drug‐metabolizing phase I and II enzymes, in the microminipig is limited. Therefore, the aim of the present study was to identify transcripts in microminipig livers and to determine gene expression profiles. De novo assembly and expression analyses of microminipig transcripts were conducted with liver samples from three male and three female microminipigs using parallel long‐read and short‐read sequencing technologies. After unique sequences had been automatically aligned by assembling software, the mean contig length of 50843 transcripts was 707 bp. The expression profiles of cytochrome P450 ( P450 ) 1A2, 2C, 2E1 and 3A genes in livers in microminipigs were similar to those in humans. Liver carboxylesterase ( CES ) precursor , liver CES‐like, UDP‐glucuronosyltransferase ( UGT ) 2C1‐like, amine sulfotransferase ( SULT )‐ like, N‐acetyltransferases ( NAT8 ) and glutathione S‐transferase ( GST ) A2 genes, which are relatively unknown genes in pigs and/or humans, were expressed strongly. Furthermore, no significant gender differences were observed in the gene expression profiles of phase I enzymes, whereas UGT2B17, SULT1E1, SULT2A1, amine SULT‐like, NAT8 and GSTT4 genes were different between males and females among phase II enzyme genes under the present sample conditions. These results provide a foundation for mechanistic studies and the use of microminipigs as model animals for drug development in the future. Copyright © 2016 John Wiley & Sons, Ltd.
    Type of Medium: Online Resource
    ISSN: 0142-2782 , 1099-081X
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 1496395-4
    SSG: 12
    SSG: 15,3
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
  • 9
    In: Freshwater Biology, Wiley, Vol. 67, No. 3 ( 2022-03), p. 549-563
    Abstract: Diverse aquatic environments in floodplains support high biodiversity, including plankton, benthos, nekton (fish), and amphibians. Variation in aquatic communities among waterbodies should be explained not only by the spatial variation in the environment at low flow but also by the hydrological dynamics and biological responses over flood and recession periods. However, very few studies have examined the formation processes of floodplain aquatic communities over flood periods. In this study, we aimed to obtain a mechanistic understanding of the assembly of aquatic communities on a temperate floodplain by conducting intensive fieldwork during and after seasonal flooding. The study was conducted in the Butokamabetsu River catchment in northern Hokkaido, where snowmelt causes annual spring floods. At peak flow, floodwater not only flow through main stream river and the extant side channels, but also flow through some palaeo‐side channels, which are usually isolated from the mainstream river and harbour stagnant water. As the floods recede, palaeo‐side channels become isolated from the mainstream river and their flow cease, but the timing of the flow cessation varied among palaeo‐side channels. We hypothesised that this spatial asynchrony in the timing of flow cessations shapes diverse floodplain aquatic communities. Therefore, we conducted field surveys of four faunal groups (plankton, benthos, nekton [fish], and amphibian) during and after the spring flood in 2019. The post‐flood aquatic communities varied spatially, according to the flow at peak flood, the timing of flow cessation, and the flow at low flow. Plankton composition was influenced by the water flow at peak flood, and they were more abundant in waterbodies that were never flushed by floodwaters. Fish composition was also influenced by the water flow at peak flood; in particular, salmonids were more abundant in waterbodies that were hydrologically connected to the main stream at peak flood. The presence of amphibian eggs was influenced by the timing of flow cessation; eggs were laid in waterbodies with stagnant water during breeding season. The benthic composition was influenced by flow at low flow. After the flood had receded, these different distribution patterns of the four biological groups led to gradual variation of aquatic communities among waterbodies on a floodplain. Overall, this study showed that hydrological dynamics during flood recession shapes the post‐flood aquatic communities, and the spatial variability in the hydrological dynamics and the different responses of the four faunal groups support diverse aquatic communities on a floodplain. Importance of the natural geomorphological complexities, where paleo‐side channels with wide range of hydrological connectivity to the river channel co‐occur, as well as the natural hydrological dynamics of snowmelt recession, where the flooding discharge gradually decrease over a certain period in spring for floodplain aquatic communities are highlighted.
    Type of Medium: Online Resource
    ISSN: 0046-5070 , 1365-2427
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2020306-8
    detail.hit.zdb_id: 121180-8
    SSG: 12
    Location Call Number Limitation Availability
    BibTip Others were also interested in ...
Close ⊗
This website uses cookies and the analysis tool Matomo. More information can be found here...