GLORIA

GEOMAR Library Ocean Research Information Access

Ihre E-Mail wurde erfolgreich gesendet. Bitte prüfen Sie Ihren Maileingang.

Leider ist ein Fehler beim E-Mail-Versand aufgetreten. Bitte versuchen Sie es erneut.

Vorgang fortführen?

Exportieren
Filter
  • Oxford University Press (OUP)  (64)
  • Liu, Yang  (64)
  • Biodiversitätsforschung  (64)
Materialart
Verlag/Herausgeber
  • Oxford University Press (OUP)  (64)
Sprache
Erscheinungszeitraum
FID
  • Biodiversitätsforschung  (64)
Fachgebiete(RVK)
  • 1
    In: Journal of Plant Ecology, Oxford University Press (OUP), Vol. 13, No. 5 ( 2020-10-01), p. 545-553
    Kurzfassung: Although soil environments exist extensive heterogeneity for many plants with a wide range of distribution, researches about effects of soil conditions on plants’ tolerance and adaptation are particularly inadequate. In our study, the aims are to reveal physiological strategies of Populus deltoides against drought stress under different soil conditions and to select the most suitable soil type for P. deltoides plantation. Methods Under controlled conditions, we used P. deltoides as a model species to detect differences in gas exchange rate, antioxidative capacity, nitrogen metabolism and biomass accumulation and partitioning in response to drought stress under three mineral soil types with distinct physicochemical characters, i.e. red soil (RS), yellow soil (YS) and yellow-brown soil (BS). Important Findings Exposure to 25% of field water holding capacity in soil for 3 months had significantly decreased biomass of all organs, photosynthetic rate, enzyme activities related to N assimilation, but increased H2O2, malondialdehyde and content of both NO3− and NH4+, when P. deltoides was planted in both RS and YS. In contrast, under BS, there are slightly negative effects exerted by water deficit on total biomass, gas exchange rate, activities of enzymes related to nitrogen metabolism and membrane damage caused by reactive oxygen species, which can be associated with a consistent increase in superoxide dismutase, peroxidase and catalase, and a higher ratio of root mass to shoot mass. It is concluded that, such higher capacity in tolerance and adaptation against drought stress under BS relative to both RS and YS could be accounted for more sufficient nutrient provision in soil parental materials and better soil aeration conditions which play a vital role in plant acclimation to water shortage. Our study also revealed that, distribution areas of BS might be preferable for cultivation of P. deltoides, when compared with those of RS and YS.
    Materialart: Online-Ressource
    ISSN: 1752-993X
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2020
    ZDB Id: 2381013-0
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 2
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 50, No. D1 ( 2022-01-07), p. D1391-D1397
    Kurzfassung: Syngeneic mouse models are tumors derived from murine cancer cells engrafted on genetically identical mouse strains. They are widely used tools for studying tumor immunity and immunotherapy response in the context of a fully functional murine immune system. Large volumes of syngeneic mouse tumor expression profiles under different immunotherapy treatments have been generated, although a lack of systematic collection and analysis makes data reuse challenging. We present Tumor Immune Syngeneic MOuse (TISMO), a database with an extensive collection of syngeneic mouse model profiles with interactive visualization features. TISMO contains 605 in vitro RNA-seq samples from 49 syngeneic cancer cell lines across 23 cancer types, of which 195 underwent cytokine treatment. TISMO also includes 1518 in vivo RNA-seq samples from 68 syngeneic mouse tumor models across 19 cancer types, of which 832 were from immune checkpoint blockade (ICB) studies. We manually annotated the sample metadata, such as cell line, mouse strain, transplantation site, treatment, and response status, and uniformly processed and quality-controlled the RNA-seq data. Besides data download, TISMO provides interactive web interfaces to investigate whether specific gene expression, pathway enrichment, or immune infiltration level is associated with differential immunotherapy response. TISMO is available at http://tismo.cistrome.org.
    Materialart: Online-Ressource
    ISSN: 0305-1048 , 1362-4962
    RVK:
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2022
    ZDB Id: 1472175-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 3
    Online-Ressource
    Online-Ressource
    Oxford University Press (OUP) ; 2010
    In:  The Plant Cell Vol. 22, No. 7 ( 2010-08-26), p. 2402-2416
    In: The Plant Cell, Oxford University Press (OUP), Vol. 22, No. 7 ( 2010-08-26), p. 2402-2416
    Kurzfassung: The mechanisms that regulate mitochondrial inheritance are not yet clear, even though it is 100 years since the first description of non-Mendelian genetics. Here, we quantified the copy numbers of mitochondrial DNA (mtDNA) in the gametic cells of angiosperm species. We demonstrate that each egg cell from Arabidopsis thaliana, Antirrhinum majus, and Nicotiana tabacum possesses 59.0, 42.7, and 73.0 copies of mtDNA on average, respectively. These values are equivalent to those in Arabidopsis mesophyll cells, at 61.7 copies per cell. On the other hand, sperm or generative cells from Arabidopsis, A. majus, and N. tabacum possess minor amounts of mtDNA, at 0.083, 0.47, and 1 copy on average, respectively. We further reveal a 50-fold degradation of mtDNA during pollen development in A. majus. In contrast, markedly high levels of mtDNA are found in the male gametic cells of Cucumis melo and Pelargonium zonale (1296.3 and 256.7 copies, respectively). Our results provide direct evidence for mitochondrial genomic insufficiency in the eggs and somatic cells and indicate that a male gamete of an angiosperm may possess mtDNA at concentrations as high as 21-fold (C. melo) or as low as 0.1% (Arabidopsis) of the levels in somatic cells. These observations reveal the existence of a strong regulatory system for the male gametic mtDNA levels in angiosperms with regard to mitochondrial inheritance.
    Materialart: Online-Ressource
    ISSN: 1532-298X , 1040-4651
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2010
    ZDB Id: 623171-8
    ZDB Id: 2004373-9
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 4
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 50, No. D1 ( 2022-01-07), p. D83-D92
    Kurzfassung: Many circRNA transcriptome data were deposited in public resources, but these data show great heterogeneity. Researchers without bioinformatics skills have difficulty in investigating these invaluable data or their own data. Here, we specifically designed circMine (http://hpcc.siat.ac.cn/circmine and http://www.biomedical-web.com/circmine/) that provides 1 821 448 entries formed by 136 871 circRNAs, 87 diseases and 120 circRNA transcriptome datasets of 1107 samples across 31 human body sites. circMine further provides 13 online analytical functions to comprehensively investigate these datasets to evaluate the clinical and biological significance of circRNA. To improve the data applicability, each dataset was standardized and annotated with relevant clinical information. All of the 13 analytic functions allow users to group samples based on their clinical data and assign different parameters for different analyses, and enable them to perform these analyses using their own circRNA transcriptomes. Moreover, three additional tools were developed in circMine to systematically discover the circRNA–miRNA interaction and circRNA translatability. For example, we systematically discovered five potential translatable circRNAs associated with prostate cancer progression using circMine. In summary, circMine provides user-friendly web interfaces to browse, search, analyze and download data freely, and submit new data for further integration, and it can be an important resource to discover significant circRNA in different diseases.
    Materialart: Online-Ressource
    ISSN: 0305-1048 , 1362-4962
    RVK:
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2022
    ZDB Id: 1472175-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 5
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 50, No. D1 ( 2022-01-07), p. D747-D757
    Kurzfassung: Many open access transcriptomic data of coronavirus disease 2019 (COVID-19) were generated, they have great heterogeneity and are difficult to analyze. To utilize these invaluable data for better understanding of COVID-19, additional software should be developed. Especially for researchers without bioinformatic skills, a user-friendly platform is mandatory. We developed the COVID19db platform (http://hpcc.siat.ac.cn/covid19db & http://www.biomedical-web.com/covid19db) that provides 39 930 drug–target–pathway interactions and 95 COVID-19 related datasets, which include transcriptomes of 4127 human samples across 13 body sites associated with the exposure of 33 microbes and 33 drugs/agents. To facilitate data application, each dataset was standardized and annotated with rich clinical information. The platform further provides 14 different analytical applications to analyze various mechanisms underlying COVID-19. Moreover, the 14 applications enable researchers to customize grouping and setting for different analyses and allow them to perform analyses using their own data. Furthermore, a Drug Discovery tool is designed to identify potential drugs and targets at whole transcriptomic scale. For proof of concept, we used COVID19db and identified multiple potential drugs and targets for COVID-19. In summary, COVID19db provides user-friendly web interfaces to freely analyze, download data, and submit new data for further integration, it can accelerate the identification of effective strategies against COVID-19.
    Materialart: Online-Ressource
    ISSN: 0305-1048 , 1362-4962
    RVK:
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2022
    ZDB Id: 1472175-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 6
    In: Journal of Plant Ecology, Oxford University Press (OUP), Vol. 15, No. 4 ( 2022-08-01), p. 818-828
    Kurzfassung: Previous studies indicated that grazing can cause significant changes in abiotic and biotic environment in grassland. However, how these changes impact germination trait selection in grassland has not been well studied. Thus, we aimed to explore whether grazing can significantly change germination trait diversity and composition of grasslands community. We measured the germination traits of species in the laboratory, and compared their performance in grazed and nongrazed grasslands. Then, we compared the community-weighted means of germination traits and functional diversity of grazed and nongrazed grasslands based on these germination traits to know whether grazed and nongrazed grasslands differed in their germination trait structures. At the species level, we found that the changes of abundance in grazed and nongrazed grasslands were not related to species’ germination traits. However, at the community level, compared with nongrazed grasslands, species in the grazed grasslands generally exhibited a higher seed germination percentage. Moreover, seed germination response in grazed grasslands was more positively related to alternating temperature than in nongrazed grasslands, and breadth of the germination temperature niche was narrower in grazed than in nongrazed grasslands. Compared with nongrazed grasslands, seed germination trait diversity was increased and germination trait evenness decreased in grazed grasslands. Grazing can change microhabitat conditions, thereby changing germination trait selection by environmental filtering, resulting in a significant difference in germinate trait composition at the community level.
    Materialart: Online-Ressource
    ISSN: 1752-993X
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2022
    ZDB Id: 2381013-0
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 7
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 49, No. 6 ( 2021-04-06), p. 3600-3600
    Materialart: Online-Ressource
    ISSN: 0305-1048 , 1362-4962
    RVK:
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2021
    ZDB Id: 1472175-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 8
    In: Nucleic Acids Research, Oxford University Press (OUP), Vol. 47, No. D1 ( 2019-01-08), p. D1128-D1136
    Materialart: Online-Ressource
    ISSN: 0305-1048 , 1362-4962
    RVK:
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2019
    ZDB Id: 1472175-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 9
    In: Biology of Reproduction, Oxford University Press (OUP), Vol. 105, No. 4 ( 2021-10-11), p. 837-845
    Kurzfassung: Although adequate periconceptional folic acid (FA) supplementation has reduced the occurrence of pregnancies affected by neural tube defects (NTDs), the mechanisms underlying FA-resistant NTDs are poorly understood, and thus NTDs still remain a global public health concern. A high level of Krüppel-like factor 12 (KLF12) exerts deleterious effects on heath in most cases, but evidence for its roles in development has not been published. We observed KLF12-overexpressing mice showed disturbed neural tube development. KLF12-overexpressing fetuses died in utero at approximately 10.5 days post-coitus, with 100% presenting cranial NTDs. Neither FA nor formate promoted normal neural tube closure in mutant fetuses. The RNA-seq results showed that a high level of KLF12 caused NTDs in mice via overactivating the sonic hedgehog (Shh) signaling pathway, leading to the upregulation of patched 1, GLI-Krüppel family member GLI1, hedgehog-interacting protein, etc., whereas FA metabolism-related enzymes did not express differently. PF-5274857, an antagonist of the Shh signaling pathway, significantly promoted dorsolateral hinge point formation and partially rescued the NTDs. The regulatory hierarchy between a high level of KLF12 and FA-resistant NTDs might provide new insights into the diagnosis and treatment of unexplained NTDs in the future.
    Materialart: Online-Ressource
    ISSN: 0006-3363 , 1529-7268
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2021
    ZDB Id: 1469812-2
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
  • 10
    In: Journal of Plant Ecology, Oxford University Press (OUP), Vol. 13, No. 1 ( 2020-02-01), p. 51-58
    Kurzfassung: Plant litter decomposition is a key ecosystem process that determines carbon and nutrient cycling in terrestrial ecosystems. As a main component of litter, cellulose is a vital energy source for the microbes associated with litter decomposition. The important role of cellulolytic enzymes in litter cellulose degradation is well understood, but seasonal patterns of cellulose degradation and whether cumulative enzyme activities and litter quality forecast cellulose degradation in an alpine meadow remain elusive, which limits our understanding of cellulose degradation in herbaceous plant litter. Methods A two-year field litterbag experiment involving three dominant species (Ajuga ovalifolia, Festuca wallichanica, and Pedicularis roylei) was conducted in an alpine meadow of the eastern Tibetan Plateau to explore the seasonal patterns of cellulose degradation and how cumulative cellulolytic enzyme activities and initial litter quality impact cellulose degradation. Important findings Our study demonstrates that cellulose degraded rapidly and exceeded 50% during the first year, which mainly occurred in the first growing season (31.9%–43.3%). At two years of decomposition, cellulose degradation was driven by cumulative endoglucanase (R2 = 0.70), cumulative cellobiohydrolase (R2 = 0.59) and cumulative 1,4-β-glucosidase (R2 = 0.57). In addition, the concentrations of cellulose, dissolved organic carbon, total phenol, lignin and lignin/N accounted for 52%–78% of the variation in cellulose degradation during the two years of decomposition. The best model for predicting cellulose degradation was the initial cellulose concentration (R2 = 0.78). The enzymatic efficiencies and the allocation of cellulolytic enzyme activities were different among species. The cellulolytic enzyme efficiencies were higher in the litter of F. wallichanica with relatively lower quality. For the complete cellulose degradation of the leaf litter, A. ovalifolia and F. wallichanica required 4-fold and 6.7-fold more endoglucanase activity, 3-fold and 4.5-fold more cellobiohydrolase activity and 1.2-fold and 1.4-fold more 1,4-β-glucosidase activity, respectively, than those required by P. roylei. Our results demonstrated that although microbial activity and litter quality both have significant impacts on cellulose degradation in an alpine meadow, using cellulose concentration to predict cellulose degradation is a good way to simplify the model of cellulose degradation and C cycling during litter decomposition.
    Materialart: Online-Ressource
    ISSN: 1752-993X
    Sprache: Englisch
    Verlag: Oxford University Press (OUP)
    Publikationsdatum: 2020
    ZDB Id: 2381013-0
    SSG: 12
    Standort Signatur Einschränkungen Verfügbarkeit
    BibTip Andere fanden auch interessant ...
Schließen ⊗
Diese Webseite nutzt Cookies und das Analyse-Tool Matomo. Weitere Informationen finden Sie hier...