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  • Microbiology Society  (9)
  • Kook, Joong-Ki  (9)
  • Biodiversity Research  (9)
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  • Microbiology Society  (9)
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  • Biodiversity Research  (9)
  • 1
    Online Resource
    Online Resource
    Absicoccus porci gen. nov., sp. nov., a member of the family Erysipelotrichaceae isolated from pig faeces
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 2 ( 2020-02-01), p. 732-737
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 2 ( 2020-02-01), p. 732-737
    Abstract: An obligately anaerobic, Gram-stain-positive and coccus-shaped bacterium, designated strain YH-panp20 T , was isolated from pig faeces. Phylogenetic analysis based on 16S rRNA gene sequencing indicated that the isolate belongs to the family Erysipelotrichaceae , and is most closely related to Catenisphaera adipataccumulans KCTC 15517 T (93.5 % sequence similarity), followed by Faecalitalea cylindroides KCTC 5815 T (92.2 %), Faecalicoccus acidiformans KCTC 15521 T (90.2 %) and Holdemanella biformis KCTC 5969 T (89.6 %). Average nucleotide identity values between YH-panp20 T and its closest relatives were lower than 71 %. The G+C content of the isolate was 38.4 mol%, and its cell-wall peptidoglycan was found to be of A1γ type and contained meso -diaminopimelic acid. The predominant fatty acids were C 18 : 1 cis 9, C 18 : 0 DMA and C 16 : 0 . The major end-products of glucose fermentation were lactate, acetate and formate. Therefore, based on the phenotypic, phylogenetic and chemotaxonomic properties, a novel genus and species, Absicoccus porci gen. nov., sp. nov., is proposed for isolate YH-panp20 T (=KCTC 15747 T =JCM 32769 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003803
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Lacticaseibacillus parakribbianus sp. nov., isolated from a pig farm faeces dump
    Microbiology Society ; 2023
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 73, No. 3 ( 2023-03-21)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 73, No. 3 ( 2023-03-21)
    Abstract: A lactic acid bacterium isolated from pig faeces was characterized using a polyphasic approach. The strain was Gram-stain-positive, rod-shaped, and facultative anaerobic. Phylogenetic analysis of the 16S rRNA gene sequence indicated that the isolate belonged to the genus Lacticaseibacillus . The multi-locus sequence tree revealed that the strain formed a sub-cluster adjacent to Lacticaseibacillus kribbianus . The main fatty acids were C 16 : 0 and C 18 : 1 ω9 c . The average nucleotide identity value, average amino acid identity, and genome-to-genome distance for YH-lacS6 T and its most closely related strain, L. kribbianus , were 85.4, 85.2 and 29.2 %, respectively. The G+C content of the genomic DNA was 61.6 mol%. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, aminophospholipids and phospholipids. The cell-wall peptidoglycan did not contain meso -diaminopimelic acid. Thus, YH-lacS6 T (=KCTC 21186 T =JCM 34954 T ) represents a novel species. The name Lacticaseibacillus parakribbianus sp. nov. is proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.005758
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2023
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Bacteroides koreensis sp. nov. and Bacteroides kribbi sp. nov., two new members of the genus Bacteroides
    Microbiology Society ; 2017
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 67, No. 11 ( 2017-11-01), p. 4352-4357
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 67, No. 11 ( 2017-11-01), p. 4352-4357
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.002226
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2017
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    Limosilactobacillus kribbianus sp. nov., isolated from pig faeces
    Microbiology Society ; 2023
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 73, No. 7 ( 2023-07-24)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 73, No. 7 ( 2023-07-24)
    Abstract: A rod-shaped, aerotolerant, Gram-stain-positive bacterium isolated from pig faeces was designated as strain YH-lim2214 T . Analysis of the 16S rRNA gene sequence revealed that the isolate was most closely related to Limosilactobacillus pontis KCTC 25258 T with 98.0 % similarity. The average nucleotide identity and average amino acid identity values between YH-lim2214 T and the most closely related strain Lm. pontis KCTC 25258 T were 81.4 and 81.3 %, respectively. The major fatty acids were C 18 : 1  ω 9 c , summed feature 7 and C 16 : 0 . The cell-wall peptidoglycan type was A4α l -Lys –d -Asp. The genomic DNA G+C content was 51.1 mol%. The chemotaxonomic, phenotypic and phylogenetic properties of YH-lim2214 T (=KCTC 25572 T =JCM 35701 T ) suggest that it represents a novel taxon, for which the name Limosilactobacillus kribbianus sp. nov. is proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.005988
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2023
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Lacticaseibacillus kribbianus sp. nov., isolated from pig farm faeces dump
    Microbiology Society ; 2022
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 72, No. 11 ( 2022-11-30)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 72, No. 11 ( 2022-11-30)
    Abstract: A lactic acid bacteria isolated from pig faeces was characterized using a polyphasic approach. Cells of the strain were Gram-stain-positive, rod-shaped and facultative anaerobic. Phylogenetic analysis of 16S rRNA gene sequence indicated that the isolate belonged to the genus Lacticaseibacillus ; however, the similarity to other homologues within the genus was 〈 98 %. Analysis of housekeeping gene sequences ( pheS and recA ) revealed that the strain formed a sub-cluster adjacent to Lacticaseibacillus absianus and Lacticaseibacillus daqingensis . The main fatty acids of the strain is the C 18 : 1 ω9 c and C 16 : 0 . The G+C content of the genomic DNA was 62.8 mol %. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, aminophospholipids and phospholipids. The cell-wall peptidoglycan did not contain meso -diaminopimelic acid. Thus, YH-lac21 T (=KCTC 21185=JCM 34953) represents a novel species. The name Lacticaseibacillus kribbianus sp. nov. is proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.005617
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2022
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Description of Paenibacillus dokdonensis sp. nov., a new bacterium isolated from soil
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 71, No. 3 ( 2019-06-06)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 3 ( 2019-06-06)
    Abstract: Two strains isolated from soil samples were designated as YH-JAE5 T and YH-JAE2. The isolates were facultative anaerobic, Gram-stain-variable, motile, rod-shaped bacteria. Phylogenetic analysis indicated that the isolates belonged to the genus Paenibacillus , but the 16S rRNA gene sequence similarities were 〈 98 % when compared with other species within the genus. Analysis of rpoB gene revealed the isolates formed a sub-cluster with P. chibensis . The only menaquinone identified was MK-7. The two isolates contained meso -diaminopimelic acid within their cell wall peptidoglycan. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phospholipid, aminophospholipids, and lipids. The major fatty acids were C 15 : 0 anteiso and C 15 : 0 iso. The average nucleotide identity, average amino acid identity, and digital DNA–DNA hybridization values between isolate YH-JAE5 T and the most closely related reference strain ( Paenibacillus chibensis KCTC 3758 T ) were 81.7, 84.8 and 23.4 %, respectively. The G+C content of the genomic DNA was 47.4 mol%. Thus, the polyphasic data revealed that YH-JAE2 (=KCTC 43239=JCM 34435) and YH-JAE5 T (=KCTC 43059=JCM 33533) represent a new species. The name Paenibacillus dokdonensis sp. nov. is proposed.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004707
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Clostridium composti sp. nov., a new anaerobic bacteria isolated from compost
    Microbiology Society ; 2018
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 68, No. 12 ( 2018-12-01), p. 3869-3873
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 68, No. 12 ( 2018-12-01), p. 3869-3873
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003074
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2018
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    Faecalicatena absiana sp. nov., an obligately anaerobic bacterium from a pig farm faeces dump
    Microbiology Society ; 2022
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 72, No. 2 ( 2022-02-14)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 72, No. 2 ( 2022-02-14)
    Abstract: An obligately anaerobic, Gram-stain-positive, spore-forming, short-rod-shaped bacterium, designated strain YH-C36a T , was isolated from a pig farm faeces dump. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate belongs to the genus Faecalicatena and is most closely related to Faecalicatena contorta KCTC 5831 T , Faecalicatena fissicatena KCTC 15010 T and Faecalicatena orotica KCTC 15331 T , with 96.3, 96.2, and 96.0 % sequence similarity, respectively. The average nucleotide identity values for strain YH-C36a T and the closest related strains were lower than 72 %. The G+C content of the isolate was 43.0 mol%. The cell-wall peptidoglycan was A1γ type and contained meso -diaminopimelic acid. The predominant fatty acids were C 16 : 0 , C 18 : 1 cis 9, C 16 : 0 DMA, C 18 : 0 DMA and C 18:0. The major end products of glucose fermentation were lactate, formate and acetate. Based on its phenotypic, phylogenetic and chemotaxonomic properties, a novel species, named Faecalicatena absiana sp. nov., is proposed for strain YH-C36a T (=KCTC 25106 T =NBRC 114768 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.005238
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2022
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Clostridium vitabionis sp. nov., isolated from the large intestine of a mini-pig
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 71, No. 3 ( 2019-06-06)
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 71, No. 3 ( 2019-06-06)
    Abstract: An obligately anaerobic, Gram-stain-negative, spore-forming, short rod-shaped bacterium, designated strain YH- T4B42 T , was isolated from the large intestine of a mini-pig. Phylogenetic analysis based on 16S rRNA gene sequences indicated that the isolate belongs to the genus Clostridium and is most closely related to Clostridium aminophilum KCTC 5424 T , Clostridium symbiosum KCTC 15329 T and Clostridium butyricum KCTC 1871 T , with 95.5, 92.4 and 83.0 % sequence similarity, respectively. The average nucleotide identity values for strain YH-T4B42 T and the closest related strains were lower than 72 %. The G+C content of the isolate was 55.8 mol%. The cell-wall peptidoglycan was A1γ type and contained meso -diaminopimelic acid. The predominant fatty acids were C 16 : 0 , C 18 : 1 cis 9, C 14 : 0 and C 18 : 0 . The major end products of glucose fermentation were lactate, formate and acetate, with a minor amount of butyrate. Based on its phenotypic, phylogenetic and chemotaxonomic properties, a novel species, Clostridium vitabionis sp. nov., is proposed for strain YH-T4B42 T (=KCTC 25105 T =NBRC 114767 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004694
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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