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  • Chou, Jui-Hsing  (11)
  • Biodiversity Research  (11)
  • 1
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    Chromobacterium aquaticum sp. nov., isolated from spring water samples
    Microbiology Society ; 2008
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 58, No. 7 ( 2008-07-01), p. 1782-1782
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 58, No. 7 ( 2008-07-01), p. 1782-1782
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/00207713-58-7-1782
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2008
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 2
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    Brachybacterium phenoliresistens sp. nov., isolated from oil-contaminated coastal sand
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 11 ( 2007-11-01), p. 2674-2679
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 11 ( 2007-11-01), p. 2674-2679
    Abstract: A coccoid- to ovoid-shaped, Gram-positive, non-motile bacterial strain, designated phenol-A T , was isolated from an oil-contaminated coastal sand sample collected from Pingtung County, southern Taiwan, and characterized by use of a polyphasic approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that the novel strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Brachybacterium in the family Dermabacteraceae , class Actinobacteria . The closest neighbours were Brachybacterium rhamnosum LMG 19848 T (96.9 % 16S rRNA gene sequence similarity), Brachybacterium nesterenkovii DSM 9573 T (97.0 %) and Brachybacterium muris C3H-21 T (96.3 %). The peptidoglycan type of strain phenol-A T was variation A4 γ with meso -diaminopimelic acid as the diagnostic cell-wall diamino acid. The isolate contained MK-7 as the major component of the quinone system. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, and unidentified phospholipids and glycolipids. The predominant fatty acid was anteiso-C 15 : 0 (59.5 %); significant amounts of iso-C 16 : 0 (9.4 %), iso-C 14 : 0 (9.5 %) and anteiso-C 17 : 0 (10.8 %) were also present. The isolate was also distinguished from recognized members of the genus Brachybacterium on the basis of several phenotypic and biochemical characteristics. It is evident from the genotypic, chemotaxonomic and phenotypic data that isolate phenol-A T represents a novel species of the genus Brachybacterium , for which the name Brachybacterium phenoliresistens sp. nov. is proposed. The type strain is phenol-A T (=LMG 23707 T =BCRC 17589 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.65019-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
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    Paenibacillus fonticola sp. nov., isolated from a warm spring
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 6 ( 2007-06-01), p. 1346-1350
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 6 ( 2007-06-01), p. 1346-1350
    Abstract: A novel bacterial strain, designated ZL T , isolated from a warm spring in Jhonglun, Taiwan, was characterized by using a polyphasic taxonomic approach. The novel strain had chemotaxonomic and morphological properties consistent with its classification in the genus Paenibacillus . Cells were Gram-variable, aerobic, sporulating, motile rods. 16S rRNA gene sequence analysis demonstrated that this novel isolate was unique, showing 94.3 % sequence similarity to Paenibacillus assamensis GPTSA 11 T and lower levels to Paenibacillus timonensis 2301032 T (94.0 %), Paenibacillus macerans ATCC 8244 T (93.3 %), Paenibacillus barengoltzii SAFN-016 T (93.3 %) and Paenibacillus sanguinis 2301083 T (93.2 %). The novel isolate could be distinguished from the type strains of all of these species based on a range of phenotypic data. The major cellular phospholipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and one unknown phosphoglycolipid. The predominant isoprenologue was an unsaturated menaquinone with seven isoprene units (MK-7). The major fatty acids of strain ZL T were C 16 : 0 (33.5 %), anteiso-C 15 : 0 (32.5 %) and iso-C 16 : 0 (9.3 %). The G+C content of the genomic DNA was 49.2 mol%. It is evident from the genotypic and phenotypic data that strain ZL T should be classified as representing a novel species of the genus Paenibacillus , for which the name Paenibacillus fonticola sp. nov. is proposed. The type strain is ZL T (=BCRC 17579 T =LMG 23577 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64872-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 4
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    Siansivirga zeaxanthinifaciens gen. nov., sp. nov., a novel zeaxanthin-producing member of the family Flavobacteriaceae isolated from coastal seawater of Taiwan
    Oxford University Press (OUP) ; 2012
    In:  FEMS Microbiology Letters Vol. 333, No. 1 ( 2012-08), p. 37-45
    Details
    In: FEMS Microbiology Letters, Oxford University Press (OUP), Vol. 333, No. 1 ( 2012-08), p. 37-45
    Type of Medium: Online Resource
    ISSN: 0378-1097
    URL: Issue
    URL: Article
    DOI: 10.1111/fml.2012.333.issue-1
    DOI: 10.1111/j.1574-6968.2012.02596.x
    RVK:
    WA 15000
    Language: English
    Publisher: Oxford University Press (OUP)
    Publication Date: 2012
    detail.hit.zdb_id: 1501716-3
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  • 5
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    Agaricicola taiwanensis gen. nov., sp. nov., an alphaproteobacterium isolated from the edible mushroom Agaricus blazei
    Microbiology Society ; 2010
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 60, No. 9 ( 2010-09-01), p. 2032-2035
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 60, No. 9 ( 2010-09-01), p. 2032-2035
    Abstract: A Gram-negative, beige-pigmented, aerobic, motile, club-shaped bacterium, designated strain CC-SBABM117 T , was isolated from the stipe of the edible mushroom Agaricus blazei Murrill. 16S rRNA gene sequence analysis demonstrated that the strain shared 〈 93 % similarity with the type strains of species in the genera Pannonibacter , Methylopila , Nesiotobacter and Stappia . The organism was unable to produce acid from carbohydrates, but utilized a number of organic acids and amino acids. Ubiquinone 10 (Q-10) was the major respiratory quinone and C 18 : 1 ω 7 c , C 19 : 0 cyclo ω 8 c , C 16 : 0 and C 18 : 0 were the predominant fatty acids. The predominant polar lipids were diphosphatidylglycerol, phosphatidylcholine, phosphatidylglycerol and phosphatidylethanolamine. The DNA G+C content of strain CC-SBABM117 T was 62.7 mol%. On the basis of 16S rRNA gene sequence analysis and chemotaxonomic and physiological data, strain CC-SBABM117 T is considered to represent a novel species of a new genus, for which the name Agaricicola taiwanensis gen. nov., sp. nov. is proposed. The type strain of Agaricicola taiwanensis is CC-SBABM117 T (=BCRC 17964 T =CCM 7684 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.016485-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2010
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
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    Tenacibaculum litopenaei sp. nov., isolated from a shrimp mariculture pond
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 5 ( 2007-05-01), p. 1148-1153
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 5 ( 2007-05-01), p. 1148-1153
    Abstract: A yellow-coloured, aerobic, Gram-negative, rod-shaped bacterial strain, designated B-I T , was isolated from the water of a shrimp ( Litopenaeus vannamei ) mariculture pond in Taiwan. No species with a validly published name showed 16S rRNA gene sequence similarity of more than 96.5 % to this novel isolate. The highest sequence similarities displayed by strain B-I T (93.2–96.1 %) were to members of the genus Tenacibaculum . The phenotypic properties of this organism were consistent with its classification in the genus Tenacibaculum . The novel isolate could be distinguished from all Tenacibaculum species by several phenotypic characteristics. The major fatty acids were iso-C 15 : 0 (22 %), summed feature 3 (C 16 : 1 ω 7 c and/or iso-C 15 : 0 2-OH; 21.3 %), iso-C 17 : 0 3-OH (12.7 %) and iso-C 15 : 1 (8.7 %). The G+C content of the genomic DNA was 35.2 mol%. Hence, genotypic and phenotypic data demonstrate that strain B-I T should be classified within a novel species in the genus Tenacibaculum , for which the name Tenacibaculum litopenaei sp. nov. is proposed. The type strain is B-I T (=BCRC 17590 T =LMG 23706 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64920-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 7
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    Luteimonas composti sp. nov., a moderately thermophilic bacterium isolated from food waste
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 4 ( 2007-04-01), p. 741-744
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 4 ( 2007-04-01), p. 741-744
    Abstract: A yellow-pigmented, Gram-negative, rod-shaped bacterium (strain CC-YY255 T ) was isolated from compost generated from food waste collected from Kinmen County, Taiwan. 16S rRNA gene sequence analysis indicated that the strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Luteimonas ; its closest neighbour was the type strain of Luteimonas mephitis (94.4 % sequence similarity). The isolate was distinguished from Luteimonas mephitis on the basis of several phenotypic properties. The organism utilized glucose, maltose, gentiobiose, melibiose and turanose and only a few organic acids (acetate, propionate) and amino acids ( l -alanyl glycine, glycyl l -aspartic acid and glycyl l -glutamic acid) as substrates. The fatty acid profile was slightly different from that reported for Luteimonas mephitis . It is evident from the genotypic, chemotaxonomic and physiological data presented that strain CC-YY255 T represents a novel species of the genus Luteimonas , for which the name Luteimonas composti sp. nov. is proposed. The type strain is CC-YY255 T (=CCUG 53595 T =CIP 109311 T =BCRC 17598 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64701-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
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    Fontibacter flavus gen. nov., sp. nov., a member of the family ‘Cyclobacteriaceae’, isolated from a hot spring
    Microbiology Society ; 2010
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 60, No. 9 ( 2010-09-01), p. 2066-2070
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 60, No. 9 ( 2010-09-01), p. 2066-2070
    Abstract: The taxonomic position of a bright orange-pigmented bacterial strain, designated CC-GZM-130 T , isolated from a water sample of the Guan-zing-ling hot spring, southern Taiwan, was studied. The strain was able to grow on nutrient agar at 25–40 °C and in the presence of 1–3 % (w/v) NaCl. Comparative analyses of the 16S rRNA gene sequence showed that the isolate was grouped in the vicinity of the genus Aquiflexum with the highest sequence similarity of 92.1 % to the type strain of Aquiflexum balticum , followed by sequence similarities of 92.0, 91.6 and 91.5 % to the type strains of Algoriphagus ornithinivorans , Algoriphagus hitonicola and Belliella baltica , respectively. The polyamine pattern showed that the major compound was sym -homospermidine. The quinone system was menaquinone MK-7. The polar lipid profile was composed predominantly of phosphatidylethanolamine, three polar lipids and one aminolipid. Minor amounts of other lipids were also detectable. The main characteristics of the fatty acid profiles of strain CC-GZM-130 T , B. baltica and Aquiflexum balticum were similar, with iso-C 15 : 0 , iso-C 17 : 1 ω 9 c and iso-C 17 : 0 3-OH as the major fatty acids, but some qualitative and quantitative differences were observed. The DNA G + C content of the novel strain was 53.2 mol%. The isolate clearly differed genotypically and phenotypically from representatives of the most closely related genera. On the basis of these differences, a novel species in a new genus, Fontibacter flavus gen. nov., sp. nov., is proposed with CC-GZM-130 T (=CCUG 57694 T =CCM 7650 T ) as the type strain of the type species.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.017210-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2010
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 9
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    Sphingomonas formosensis sp. nov., a polycyclic aromatic hydrocarbon-degrading bacterium isolated from agricultural soil
    Microbiology Society ; 2012
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 62, No. Pt_7 ( 2012-07-01), p. 1581-1586
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 62, No. Pt_7 ( 2012-07-01), p. 1581-1586
    Abstract: In the present study, a yellow-pigmented, Gram-negative, short rod-shaped novel bacterium that was capable of degrading a wide range of polycyclic aromatic hydrocarbons (naphthalene, phenanthrene and pyrene) was isolated from agricultural soil located in Yunlin County, Taiwan. Comparative 16S rRNA gene sequence analysis positioned the novel strain in the genus Sphingomonas as an independent lineage adjacent to a subclade containing Sphingomonas fennica K101 T , Sphingomonas histidinilytica UM2 T , Sphingomonas wittichii RW1 T and Sphingomonas haloaromaticamans A175 T . 16S rRNA gene sequence analysis of strain CC-Nfb-2 T showed highest sequence similarity to S. fennica K101 T (96.2 %), S. histidinilytica UM2 T (96.1 %), S. wittichii RW1 T (95.9 %), S. haloaromaticamans A175 T (95.7 %), and Sphingobium ummariense RL-3 T (94.7 %); lower sequence similarities were observed with strains of all other Sphingomonas species. The strain contained phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, sphingoglycolipid and diphosphatidylglycerol. The predominant fatty acids were summed feature 8 (C 18 : 1 ω7 c and/or C 18 : 1 ω6 c ) C 16 : 0 and 11-methyl C 18 : 1 ω7 c ; C 14 : 0 2-OH was the major 2-hydroxy fatty acid. Previously, these lipids have been found to be characteristic of members of the genus Sphingomonas . The serine palmitoyl transferase gene ( spt ) was also detected and sphingolipid synthesis was confirmed. The predominant isoprenoid quinone system was ubiquinone (Q-10) and the isolate contained sym -homospermidine as the major polyamine. The DNA G+C content of the isolate was 62.8±0.8 mol%. On the basis of chemotaxonomic, phenotypic and phylogenetic data, strain CC-Nfb-2 T represents a novel species within the genus Sphingomonas , for which the name Sphingomonas formosensis sp. nov. is proposed; the type strain is CC-Nfb-2 T ( = BCRC 80272 T  = DSM 24164 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.034728-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2012
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
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  • 10
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    Trabulsiella odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus Shiraki
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 4 ( 2007-04-01), p. 696-700
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 4 ( 2007-04-01), p. 696-700
    Abstract: Bacterial strains Eant 3-9 T and Eant 3-3, isolated from the gut of the termite Odontotermes formosanus , were characterized using a polyphasic taxonomic approach. Cells of these organisms were Gram-negative, non-pigmented, rod-shaped, non-endospore-forming and facultatively anaerobic. Phenotypic, physiological and genetic characteristics of the two strains were highly similar. Phylogenetic analyses using 16S rRNA gene sequences showed that strain Eant 3-9 T formed a monophyletic branch towards the periphery of the evolutionary radiation occupied by the genus Trabulsiella ; its closest neighbour was Trabulsiella guamensis DSM 16940 T (98.1 % similarity). Genomic DNA–DNA relatedness between strains Eant 3-9 T and Eant 3-3 was 96±4 %, indicating that they belong to a single species. Eant 3-9 T displayed DNA–DNA relatedness values of 48±5 and 14±3 % with T. guamensis DSM 16940 T and Salmonella typhimurium ATCC 13311 T , respectively, indicating that Eant 3-9 T warrants novel species status in the genus Trabulsiella . Eant 3-9 T and Eant 3-3 could be further distinguished from T. guamensis DSM 16940 T using whole-cell protein profiles and a range of physiological and biochemical characteristics. It is evident from genotypic and phenotypic data that Eant 3-9 T represents a novel species in the genus Trabulsiella , for which the name Trabulsiella odontotermitis sp. nov. is proposed. The type strain is Eant 3-9 T (=BCRC 17577 T =LMG 23580 T ); Eant 3-3 is a reference strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.64632-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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