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  • Chou, Jui-Hsing  (7)
  • 2005-2009  (7)
  • Biodiversity Research  (7)
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  • 2005-2009  (7)
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  • Biodiversity Research  (7)
  • 1
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 11 ( 2007-11-01), p. 2674-2679
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 11 ( 2007-11-01), p. 2674-2679
    Abstract: A coccoid- to ovoid-shaped, Gram-positive, non-motile bacterial strain, designated phenol-A T , was isolated from an oil-contaminated coastal sand sample collected from Pingtung County, southern Taiwan, and characterized by use of a polyphasic approach. Phylogenetic analyses based on 16S rRNA gene sequences showed that the novel strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Brachybacterium in the family Dermabacteraceae , class Actinobacteria . The closest neighbours were Brachybacterium rhamnosum LMG 19848 T (96.9 % 16S rRNA gene sequence similarity), Brachybacterium nesterenkovii DSM 9573 T (97.0 %) and Brachybacterium muris C3H-21 T (96.3 %). The peptidoglycan type of strain phenol-A T was variation A4 γ with meso -diaminopimelic acid as the diagnostic cell-wall diamino acid. The isolate contained MK-7 as the major component of the quinone system. The polar lipid profile consisted of diphosphatidylglycerol, phosphatidylglycerol, and unidentified phospholipids and glycolipids. The predominant fatty acid was anteiso-C 15 : 0 (59.5 %); significant amounts of iso-C 16 : 0 (9.4 %), iso-C 14 : 0 (9.5 %) and anteiso-C 17 : 0 (10.8 %) were also present. The isolate was also distinguished from recognized members of the genus Brachybacterium on the basis of several phenotypic and biochemical characteristics. It is evident from the genotypic, chemotaxonomic and phenotypic data that isolate phenol-A T represents a novel species of the genus Brachybacterium , for which the name Brachybacterium phenoliresistens sp. nov. is proposed. The type strain is phenol-A T (=LMG 23707 T =BCRC 17589 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 2
    Online Resource
    Online Resource
    Microbiology Society ; 2008
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 58, No. 7 ( 2008-07-01), p. 1782-1782
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 58, No. 7 ( 2008-07-01), p. 1782-1782
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2008
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 3
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 6 ( 2007-06-01), p. 1346-1350
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 6 ( 2007-06-01), p. 1346-1350
    Abstract: A novel bacterial strain, designated ZL T , isolated from a warm spring in Jhonglun, Taiwan, was characterized by using a polyphasic taxonomic approach. The novel strain had chemotaxonomic and morphological properties consistent with its classification in the genus Paenibacillus . Cells were Gram-variable, aerobic, sporulating, motile rods. 16S rRNA gene sequence analysis demonstrated that this novel isolate was unique, showing 94.3 % sequence similarity to Paenibacillus assamensis GPTSA 11 T and lower levels to Paenibacillus timonensis 2301032 T (94.0 %), Paenibacillus macerans ATCC 8244 T (93.3 %), Paenibacillus barengoltzii SAFN-016 T (93.3 %) and Paenibacillus sanguinis 2301083 T (93.2 %). The novel isolate could be distinguished from the type strains of all of these species based on a range of phenotypic data. The major cellular phospholipids were phosphatidylglycerol, diphosphatidylglycerol, phosphatidylethanolamine and one unknown phosphoglycolipid. The predominant isoprenologue was an unsaturated menaquinone with seven isoprene units (MK-7). The major fatty acids of strain ZL T were C 16 : 0 (33.5 %), anteiso-C 15 : 0 (32.5 %) and iso-C 16 : 0 (9.3 %). The G+C content of the genomic DNA was 49.2 mol%. It is evident from the genotypic and phenotypic data that strain ZL T should be classified as representing a novel species of the genus Paenibacillus , for which the name Paenibacillus fonticola sp. nov. is proposed. The type strain is ZL T (=BCRC 17579 T =LMG 23577 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 4
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 5 ( 2007-05-01), p. 1148-1153
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 5 ( 2007-05-01), p. 1148-1153
    Abstract: A yellow-coloured, aerobic, Gram-negative, rod-shaped bacterial strain, designated B-I T , was isolated from the water of a shrimp ( Litopenaeus vannamei ) mariculture pond in Taiwan. No species with a validly published name showed 16S rRNA gene sequence similarity of more than 96.5 % to this novel isolate. The highest sequence similarities displayed by strain B-I T (93.2–96.1 %) were to members of the genus Tenacibaculum . The phenotypic properties of this organism were consistent with its classification in the genus Tenacibaculum . The novel isolate could be distinguished from all Tenacibaculum species by several phenotypic characteristics. The major fatty acids were iso-C 15 : 0 (22 %), summed feature 3 (C 16 : 1 ω 7 c and/or iso-C 15 : 0 2-OH; 21.3 %), iso-C 17 : 0 3-OH (12.7 %) and iso-C 15 : 1 (8.7 %). The G+C content of the genomic DNA was 35.2 mol%. Hence, genotypic and phenotypic data demonstrate that strain B-I T should be classified within a novel species in the genus Tenacibaculum , for which the name Tenacibaculum litopenaei sp. nov. is proposed. The type strain is B-I T (=BCRC 17590 T =LMG 23706 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 5
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 4 ( 2007-04-01), p. 741-744
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 4 ( 2007-04-01), p. 741-744
    Abstract: A yellow-pigmented, Gram-negative, rod-shaped bacterium (strain CC-YY255 T ) was isolated from compost generated from food waste collected from Kinmen County, Taiwan. 16S rRNA gene sequence analysis indicated that the strain formed a monophyletic branch at the periphery of the evolutionary radiation occupied by the genus Luteimonas ; its closest neighbour was the type strain of Luteimonas mephitis (94.4 % sequence similarity). The isolate was distinguished from Luteimonas mephitis on the basis of several phenotypic properties. The organism utilized glucose, maltose, gentiobiose, melibiose and turanose and only a few organic acids (acetate, propionate) and amino acids ( l -alanyl glycine, glycyl l -aspartic acid and glycyl l -glutamic acid) as substrates. The fatty acid profile was slightly different from that reported for Luteimonas mephitis . It is evident from the genotypic, chemotaxonomic and physiological data presented that strain CC-YY255 T represents a novel species of the genus Luteimonas , for which the name Luteimonas composti sp. nov. is proposed. The type strain is CC-YY255 T (=CCUG 53595 T =CIP 109311 T =BCRC 17598 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 6
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 4 ( 2007-04-01), p. 696-700
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 4 ( 2007-04-01), p. 696-700
    Abstract: Bacterial strains Eant 3-9 T and Eant 3-3, isolated from the gut of the termite Odontotermes formosanus , were characterized using a polyphasic taxonomic approach. Cells of these organisms were Gram-negative, non-pigmented, rod-shaped, non-endospore-forming and facultatively anaerobic. Phenotypic, physiological and genetic characteristics of the two strains were highly similar. Phylogenetic analyses using 16S rRNA gene sequences showed that strain Eant 3-9 T formed a monophyletic branch towards the periphery of the evolutionary radiation occupied by the genus Trabulsiella ; its closest neighbour was Trabulsiella guamensis DSM 16940 T (98.1 % similarity). Genomic DNA–DNA relatedness between strains Eant 3-9 T and Eant 3-3 was 96±4 %, indicating that they belong to a single species. Eant 3-9 T displayed DNA–DNA relatedness values of 48±5 and 14±3 % with T. guamensis DSM 16940 T and Salmonella typhimurium ATCC 13311 T , respectively, indicating that Eant 3-9 T warrants novel species status in the genus Trabulsiella . Eant 3-9 T and Eant 3-3 could be further distinguished from T. guamensis DSM 16940 T using whole-cell protein profiles and a range of physiological and biochemical characteristics. It is evident from genotypic and phenotypic data that Eant 3-9 T represents a novel species in the genus Trabulsiella , for which the name Trabulsiella odontotermitis sp. nov. is proposed. The type strain is Eant 3-9 T (=BCRC 17577 T =LMG 23580 T ); Eant 3-3 is a reference strain.
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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  • 7
    Online Resource
    Online Resource
    Microbiology Society ; 2007
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 57, No. 4 ( 2007-04-01), p. 887-891
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 57, No. 4 ( 2007-04-01), p. 887-891
    Abstract: A bacterial strain, designated Dant 3-8 T , isolated from the gut of the termite Odontotermes formosanus , was investigated by a polyphasic taxonomic approach. The cells were rod-shaped, Gram-negative, non-pigmented, non-spore-forming and non-fermentative. Phylogenetic analyses using the 16S rRNA gene sequence showed that the strain formed a monophyletic branch towards the periphery of the evolutionary radiation occupied by the genus Comamonas , its closest neighbours being Comamonas testosteroni DSM 50244 T (96.4 % sequence similarity), Comamonas koreensis KCTC 12005 T (96.0 %) and Comamonas terrigena DSM 7099 T (96.2 %). Strain Dant 3-8 T was clearly distinguished from all of these strains by using phylogenetic analysis, DNA–DNA hybridization, whole-cell protein profiles, fatty acid composition data and a range of physiological and biochemical characteristics. It is evident from the genotypic and phenotypic data that Dant 3-8 T represents a novel species in the genus Comamonas , for which the name Comamonas odontotermitis sp. nov. is proposed. The type strain is Dant 3-8 T (=BCRC 17576 T =LMG 23579 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2007
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
    Location Call Number Limitation Availability
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