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  • Wiley  (24)
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  • Biodiversity Research  (24)
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  • Wiley  (24)
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  • English  (24)
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  • Biodiversity Research  (24)
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  • 1
    Online Resource
    Online Resource
    Wiley ; 2022
    In:  Journal of Integrative Plant Biology Vol. 64, No. 12 ( 2022-12), p. 2344-2360
    In: Journal of Integrative Plant Biology, Wiley, Vol. 64, No. 12 ( 2022-12), p. 2344-2360
    Abstract: Active DNA demethylation effectively modulates gene expression during plant development and in response to stress. However, little is known about the upstream regulatory factors that regulate DNA demethylation. We determined that the demethylation regulator 1 ( demr1 ) mutant exhibits a distinct DNA methylation profile at selected loci queried by methylation‐sensitive polymerase chain reaction and globally based on whole‐genome bisulfite sequencing. Notably, the transcript levels of the DNA demethylase gene REPRESSOR OF SILENCING 1 ( ROS1 ) were lower in the demr1 mutant. We established that DEMR1 directly binds to the ROS1 promoter in vivo and in vitro , and the methylation level in the DNA methylation monitoring sequence of ROS1 promoter decreased by 60% in the demr1 mutant. About 40% of the hyper‐differentially methylated regions (DMRs) in the demr1 mutant were shared with the ros1‐4 mutant. Genetic analysis indicated that DEMR1 acts upstream of ROS1 to positively regulate abscisic acid (ABA) signaling during seed germination and seedling establishment stages. Surprisingly, the loss of DEMR1 function also caused a rise in methylation levels of the mitochondrial genome, impaired mitochondrial structure and an early flowering phenotype. Together, our results show that DEMR1 is a novel regulator of DNA demethylation of both the nuclear and mitochondrial genomes in response to ABA and plant development in Arabidopsis .
    Type of Medium: Online Resource
    ISSN: 1672-9072 , 1744-7909
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 2130095-1
    SSG: 12
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  • 2
    In: New Phytologist, Wiley, Vol. 210, No. 4 ( 2016-06), p. 1327-1343
    Abstract: In eukaryotes, the retromer is an endosome‐localized complex involved in protein retrograde transport. However, the role of such intracellular trafficking events in pathogenic fungal development and pathogenicity remains unclear. The role of the retromer complex in Fusarium graminearum was investigated using cell biological and genetic methods. We observed the retromer core component FgVps35 (Vacuolar Protein Sorting 35) in the cytoplasm as fast‐moving puncta. FgVps35‐ GFP co‐localized with both early and late endosomes, and associated with the trans‐Golgi network ( TGN ), suggesting that FgVps35 functions at the donor endosome membrane to mediate TGN trafficking. Disruption of microtubules with nocodazole significantly restricted the transportation of FgVps35‐ GFP and resulted in severe germination and growth defects. Mutation of Fg VPS 35 not only mimicked growth defects induced by pharmacological treatment, but also affected conidiation, ascospore formation and pathogenicity. Using yeast two‐hybrid assays, we determined the interactions among FgVps35, FgVps26, FgVps29, FgVps17 and FgVps5 which are analogous to the yeast retromer complex components. Deletion of any one of these genes resulted in similar phenotypic defects to those of the ΔFgvps35 mutant and disrupted the stability of the complex. Overall, our results provide the first clear evidence of linkage between the retrograde transport mediated by the retromer complex and virulence in F. graminearum .
    Type of Medium: Online Resource
    ISSN: 0028-646X , 1469-8137
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 208885-X
    detail.hit.zdb_id: 1472194-6
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  • 3
    In: Environmental Microbiology, Wiley, Vol. 18, No. 11 ( 2016-11), p. 3742-3757
    Abstract: Fusarium graminearum is an important plant pathogen that causes head blight of major cereal crops. The vacuolar protein sorting (Vps) protein Vps27 is a component of ESCRT‐0 involved in the multivesicular body (MVB) sorting pathway during endocytosis. In this study, we investigated the function of FgVps27 using a gene replacement strategy. The FgVPS27 deletion mutant ( ΔFgvps27 ) exhibited a reduction in growth rate, aerial hyphae formation and hydrophobicity. It also showed increased sensitivity to cell wall‐damaging agents and to osmotic stresses. In addition, FgHog1, the critical component of high osmolarity glycerol response pathway, was mis‐localized in the ΔFgvps27 mutant upon NaCl treatment. Furthermore, the ΔFgvps27 mutant was defective in conidial production and was unable to generate perithecium in sexual reproduction. The depletion of FgVPS27 also caused a significant reduction in virulence. Further analysis by domain‐specific deletion revealed that the FYVE domain was essential for the FgVps27 function and was necessary for the proper localization of FgVps27‐GFP and endocytosis. Another component of ESCRT‐0, the FgVps27‐interacting partner FgHse1, also played an important role in F. graminearum development and pathogenesis. Overall, our results indicate that ESCRT‐0 components play critical roles in a variety of cellular and biological processes.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2016
    detail.hit.zdb_id: 2020213-1
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  • 4
    In: Environmental Microbiology, Wiley, Vol. 17, No. 11 ( 2015-11), p. 4580-4599
    Abstract: Rab GTPases represent the largest subfamily of Ras‐related small GTP ases and regulate membrane trafficking. Vesicular transport is a general mechanism that governs intracellular membrane trafficking along the endocytic and exocytic pathways in all eukaryotic cells. F usarium graminearum is a filamentous fungus and causes the devastating and economically important head blight of wheat and related species. The mechanism of vesicular transport is not well understood, and little is known about Rab GTP ases in F . graminearum . In this study, we systematically characterized all eleven FgRabs by live cell imaging and genetic analysis. We find that FgRab51 and FgRab52 are important for the endocytosis, FgR ab7 localizes to the vacuolar membrane and regulates the fusion of vacuoles and autophagosomes, and FgR ab8 and FgRab11 are important for polarized growth and/or exocytosis. Furthermore, both endocytic and exocytic FgR abs are required for vegetative growth, conidiogenesis, sexual reproduction, as well as pathogenesis and deoxynivalenol metabolism in F . graminearum . Thus, we conclude that R ab GTP ases are essential for membrane trafficking‐dependent growth and pathogenicity in F . graminearum .
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2015
    detail.hit.zdb_id: 2020213-1
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  • 5
    Online Resource
    Online Resource
    Wiley ; 2019
    In:  Journal of Integrative Plant Biology Vol. 61, No. 11 ( 2019-11), p. 1128-1133
    In: Journal of Integrative Plant Biology, Wiley, Vol. 61, No. 11 ( 2019-11), p. 1128-1133
    Abstract: MicroRNAs (miRNAs) are vital regulators that repress gene expression in the cytoplasm in two main ways: mRNA degradation and translational inhibition. Several animal studies have shown that miRNAs also target promoters, thereby activating expression. Whether this miRNA action also occurs in plants is unknown. In this study, we demonstrated that several miRNAs regulate target promoters in Arabidopsis thaliana . For example, miR5658 was predominantly present in the nucleus and activated the expression of AT3G25290 directly by binding to its promoter. Our observations suggest that this mode of action may be a general feature of plant miRNAs, and thus provide insight into the vital roles of plant miRNAs in the nucleus.
    Type of Medium: Online Resource
    ISSN: 1672-9072 , 1744-7909
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2019
    detail.hit.zdb_id: 2130095-1
    SSG: 12
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  • 6
    In: Journal of Integrative Plant Biology, Wiley, Vol. 62, No. 4 ( 2020-04), p. 403-420
    Abstract: Low molecular weight secreted peptides have recently been shown to affect multiple aspects of plant growth, development, and defense responses. Here, we performed stepwise BLAST filtering to identify unannotated peptides from the Arabidopsis thaliana protein database and uncovered a novel secreted peptide family, secreted transmembrane peptides (STMPs). These low molecular weight peptides, which consist of an N‐terminal signal peptide and a transmembrane domain, were primarily localized to extracellular compartments but were also detected in the endomembrane system of the secretory pathway, including the endoplasmic reticulum and Golgi. Comprehensive bioinformatics analysis identified 10 STMP family members that are specific to the Brassicaceae family. Brassicaceae plants showed dramatically inhibited root growth upon exposure to chemically synthesized STMP1 and STMP2. Arabidopsis overexpressing STMP1 , 2 , 4 , 6 , or 10 exhibited severely arrested growth, suggesting that STMPs are involved in regulating plant growth and development. In addition, in vitro bioassays demonstrated that STMP1, STMP2, and STMP10 have antibacterial effects against Pseudomonas syringae pv. tomato DC3000, Ralstonia solanacearum , Bacillus subtilis , and Agrobacterium tumefaciens , demonstrating that STMPs are antimicrobial peptides. These findings suggest that STMP family members play important roles in various developmental events and pathogen defense responses in Brassicaceae plants.
    Type of Medium: Online Resource
    ISSN: 1672-9072 , 1744-7909
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2020
    detail.hit.zdb_id: 2130095-1
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  • 7
    In: Journal of Biomedical Materials Research Part A, Wiley, Vol. 100A, No. 4 ( 2012-04), p. 894-902
    Abstract: To understand the chronic spleen injury induced by intragastric administrations with 2.5, 5, and 10 mg kg −1 body weight titanium dioxide nanoparticles (TiO 2 NPs) for 90 consecutive days, histopathological and ultrastructure changes, hematological parameters, lymphocyte subsets, the inflammatory, and apoptotic cytokines in the mouse spleen were investigated. Our findings indicate that TiO 2 NPs exposure results in the significant increase in the spleen indices, histopathological changes, and splenocyte apoptosis in spleen. Especially, in these TiO 2 NPs‐treated mice, immunoglobulin, blood cells, platelets, hemoglobin, lymphocyte subsets (such as CD3, CD4, CD8, B cell, natural killer cell) of mice were significantly decreased. Furthermore, TiO 2 NPs exposure can significantly increase the levels of nucleic factor‐κB, tumor necrosis factor‐α, macrophage migration inhibitory factor, interleukin‐2, interleukin‐4, interleukin‐6, interleukin‐8, interleukin‐10, interleukin‐18, interleukin‐1β, cross‐reaction protein, transforming growth factor‐β, interferon‐γ, Bax, and CYP1A1 expression, whereas decrease the levels of Bcl‐2 and heat shock protein 70 expression. These findings suggest that long‐term exposure to low dose TiO 2 NPs may result in spleen injury and reduction of immune capacity, TiO 2 NP‐induced injury in spleen may result from alteration of inflammatory and apoptotic cytokines expression, and workers and consumers should take great caution when handling nanomaterials. © 2012 Wiley Periodicals, Inc. J Biomed Mater Res Part A:, 2012.
    Type of Medium: Online Resource
    ISSN: 1549-3296 , 1552-4965
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2012
    detail.hit.zdb_id: 1477192-5
    SSG: 12
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  • 8
    In: Environmental Microbiology, Wiley, Vol. 20, No. 7 ( 2018-07), p. 2370-2385
    Abstract: Mud volcanoes (MVs) emit globally significant quantities of methane into the atmosphere, however, methane cycling in such environments is not yet fully understood, as the roles of microbes and their associated biogeochemical processes have been largely overlooked. Here, we used data from high‐throughput sequencing of microbial 16S rRNA gene amplicons from six MVs in the Junggar Basin in northwest China to quantify patterns of diversity and characterize the community structure of archaea and bacteria. We found anaerobic methanotrophs and diverse sulfate‐ and iron‐reducing microbes in all of the samples, and the diversity of both archaeal and bacterial communities was strongly linked to the concentrations of sulfate, iron and nitrate, which could act as electron acceptors in anaerobic oxidation of methane (AOM). The impacts of sulfate/iron/nitrate on AOM in the MVs were verified by microcosm experiments. Further, two representative MVs were selected to explore the microbial interactions based on phylogenetic molecular ecological networks. The sites showed distinct network structures, key species and microbial interactions, with more complex and numerous linkages between methane‐cycling microbes and their partners being observed in the iron/sulfate‐rich MV. These findings suggest that electron acceptors are important factors driving the structure of microbial communities in these methane‐rich environments.
    Type of Medium: Online Resource
    ISSN: 1462-2912 , 1462-2920
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2018
    detail.hit.zdb_id: 2020213-1
    SSG: 12
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  • 9
    In: New Phytologist, Wiley, Vol. 235, No. 6 ( 2022-09), p. 2300-2312
    Abstract: Known for their regulatory roles in stem cell homeostasis, CLAVATA3/ESR‐RELATED (CLE) peptides also function as mediators of external stimuli such as hormones. De novo shoot regeneration, representing the remarkable plant cellular plasticity, involves reconstitution of stem cells under control of stem‐cell regulators. Yet whether and how stem cell‐regulating CLE peptides are implicated in plant regeneration remains unknown. By CRISPR/Cas9‐induced loss‐of‐function studies, peptide application, precursor overexpression, and expression analyses, the role of CLE1–CLE7 peptides and their receptors in de novo shoot regeneration was studied in Arabidopsis thaliana . CLE1 – CLE7 are induced by callus‐induction medium and dynamically expressed in pluripotent callus. Exogenously‐applied CLE1–CLE7 peptides or precursor overexpression effectively leads to shoot regeneration suppression, whereas their simultaneous mutation results in enhanced regenerative capacity, demonstrating that CLE1–CLE7 peptides redundantly function as negative regulators of de novo shoot regeneration. CLE1–CLE7‐mediated shoot regeneration suppression is impaired in loss‐of‐function mutants of callus‐expressed CLAVATA1 ( CLV1 ) and BARELY ANY MERISTEM1 ( BAM1 ) genes, indicating that CLV1/BAM1 are required for CLE1–CLE7‐mediated shoot regeneration signaling. CLE1–CLE7 signaling resulted in transcriptional repression of WUSCHEL ( WUS ), a stem cell‐promoting transcription factor known as a principal regulator of plant regeneration. Our results indicate that functionally‐redundant CLE1–CLE7 peptides genetically act through CLV1/BAM1 receptors and repress WUS expression to modulate shoot‐regeneration capacity, establishing the mechanistic basis for CLE1–CLE7‐mediated shoot regeneration and a novel role for CLE peptides in hormone‐dependent developmental plasticity.
    Type of Medium: Online Resource
    ISSN: 0028-646X , 1469-8137
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2022
    detail.hit.zdb_id: 208885-X
    detail.hit.zdb_id: 1472194-6
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  • 10
    In: Journal of Integrative Plant Biology, Wiley, Vol. 63, No. 4 ( 2021-04), p. 723-739
    Abstract: Protein–protein interaction (PPI) network analysis is an effective method to identify key proteins during plant development, especially in species for which basic molecular research is lacking, such as apple ( Malus domestica ). Here, an MdPPI network containing 30 806 PPIs was inferred in apple and its quality and reliability were rigorously verified. Subsequently, a root‐growth subnetwork was extracted to screen for critical proteins in root growth. Because hormone‐related proteins occupied the largest proportion of critical proteins, a hormone‐related sub‐subnetwork was further extracted from the root‐growth subnetwork. Among these proteins, auxin‐related M. domestica TRANSPORT INHIBITOR RESISTANT 1 (MdTIR1) served as the central, high‐degree node, implying that this protein exerts essential roles in root growth. Furthermore, transgenic apple roots overexpressing an MdTIR1 transgene displayed increased primary root elongation. Expression analysis showed that MdTIR1 significantly upregulated auxin‐responsive genes in apple roots, indicating that it mediates root growth in an auxin‐dependent manner. Further experimental validation revealed that MdTIR1 interacted with and accelerated the degradation of MdIAA28, MdIAA43, and MdIAA46. Thus, MdTIR1‐mediated degradation of MdIAAs is critical in auxin signal transduction and root growth regulation in apple. Moreover, our network analysis and high‐degree node screening provide a novel research technique for more generally characterizing molecular mechanisms.
    Type of Medium: Online Resource
    ISSN: 1672-9072 , 1744-7909
    URL: Issue
    Language: English
    Publisher: Wiley
    Publication Date: 2021
    detail.hit.zdb_id: 2130095-1
    SSG: 12
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