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  • Microbiology Society  (19)
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  • 1
    Online Resource
    Online Resource
    Phaeodactylibacter luteus sp. nov., isolated from the oleaginous microalga Picochlorum sp.
    Microbiology Society ; 2015
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 65, No. Pt_8 ( 2015-08-01), p. 2666-2670
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 65, No. Pt_8 ( 2015-08-01), p. 2666-2670
    Abstract: A Gram-staining-negative, orange-pigmented, non-motile, aerobic bacterial strain, designated GYP20 T , was isolated from a culture of the alga Picochlorum sp., a promising feedstock for biodiesel production, which was isolated from the India Ocean. Growth was observed at temperatures from 20 to 37 °C, salinities from 0 to 3  % and pH from 5 to 9.Mg 2+ and Ca 2+ ions were required for growth. Phylogenetic analysis based on 16S rRNA gene sequencing revealed that the strain was a member of the genus Phaeodactylibacter , which belongs to the family Saprospiraceae . Strain GYP20 T was most closely related to Phaeodactylibacter xiamenensis KD52 T (95.5  % sequence similarity). The major fatty acids were iso-C 15 : 1 G, iso-C 15 : 0 , iso-C 17 : 0 3-OH and summed feature 3. The predominant respiratory quinone was menaquinone-7 (MK-7). The polar lipids of strain GYP20 T were found to consist of diphosphatidylglycerol, phosphatidylethanolamine, phosphatidylglycerol, four unidentified glycolipids, two unidentified phospholipids and three unidentified aminolipids. According to its morphology, physiology, fatty acid composition and 16S rRNA sequence data, the novel strain most appropriately belongs to the genus Phaeodactylibacter , but can readily be distinguished from Phaeodactylibacter xiamenensis GYP20 T . The name Phaeodactylibacter luteus sp. nov. is proposed with the type strain GYP20 T ( = MCCC 1F01222 T  = KCTC 42180 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.000321
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 2
    Online Resource
    Online Resource
    Aquiflexum aquatile sp. nov., isolated from lake water
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 69, No. 7 ( 2019-07-01), p. 1947-1952
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 69, No. 7 ( 2019-07-01), p. 1947-1952
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003405
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 3
    Online Resource
    Online Resource
    Aliidiomarina celeris sp. nov., isolated from coastal sediment
    Microbiology Society ; 2019
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 69, No. 1 ( 2019-01-01), p. 171-176
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 69, No. 1 ( 2019-01-01), p. 171-176
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003123
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2019
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 4
    Online Resource
    Online Resource
    Gimesia benthica sp. nov., a planctomycete isolated from a deep-sea water sample of the Northwest Indian Ocean
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 7 ( 2020-07-01), p. 4384-4389
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 7 ( 2020-07-01), p. 4384-4389
    Abstract: A Gram-stain-negative, stalked, oval-shaped and budding bacterial strain, designated E7 T , was isolated from a deep-sea water sample collected from the Northwest Indian Ocean. The novel strain was strictly aerobic, and catalase- and oxidase-positive. It grew at 6–40 °C (optimum 30 °C) and pH 5.5–8.0 (optimum pH 7.0–7.5). The strain required 0.5–9.0 % (w/v) NaCl (optimum 3.0–5.0 %) for growth. Aesculin, starch, pectin and Tween 20 were hydrolysed. Based on 16S rRNA gene sequence analysis, strain E7 T showed the highest similarity with Gimesia maris DSM 8797 T (97.5 %). The average nucleotide identity and in silico DNA–DNA hybridization values between strain E7 T and G. maris DSM 8797 T were 78.0 and 19.3 %, respectively. The predominant cellular fatty acids of strain E7 T were C 16 : 0 and summed feature 3 (comprising C 16 : 1 ω7 c and/or C 16 : 1 ω6 c ). The major respiratory quinone was menaquinone-6 (MK-6) and the major polar lipids were phosphatidylethanolamine (PE), phosphatidylmonomethylethanolamine (PMME), phosphatidyldimethylethanolamine (PDME), phosphatidylcholine (PC) and diphosphatidylglycerol (DPG). The genomic DNA G+C content of strain E7 T was 52.8 mol%. On the basis of phylogenetic inference and phenotypic characteristics, it is proposed that strain E7 T represents a novel species of the genus Gimesia , for which the name Gimesia benthica sp. nov. is proposed. The type strain is E7 T (=CGMCC 1.16119 T =KCTC 72737 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004301
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 5
    Online Resource
    Online Resource
    Halovulum marinum sp. nov., isolated from deep-sea water of the Indian Ocean, and emended description of the genus Halovulum
    Microbiology Society ; 2020
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 70, No. 8 ( 2020-08-01), p. 4523-4530
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 70, No. 8 ( 2020-08-01), p. 4523-4530
    Abstract: A novel Gram-stain-negative, aerobic, motile by peritrichous flagella, oval to rod-shaped bacterium, designated strain 2CG4 T , was isolated from a deep-sea water sample collected from the Northwest Indian Ocean. The results of phylogenetic analysis of both 16S rRNA gene and RpoC protein sequences indicated that this strain was affiliated with the genus Halovulum in the Amaricoccus clade of the family Rhodobacteraceae of the class Alphaproteobacteria , sharing 95.3 % similarity at the 16S rRNA gene sequence level with the type strain of Halovulum dunhuangense YYQ-30 T , the only species in the genus Halovulum . The predominant fatty acids ( 〉 10 %) of 2CG4 T were summed feature 8 (C 18 : 1 ω7 c and/ or C 18 : 1 ω6 c ; 61.1 %) and cyclo -C 19 : 0 ω8 c (15.6 %). The polar lipids of 2CG4 T were phosphatidylethanolamine, phosphatidylmethylethanolamine, phosphatidylglycerol, diphosphatidylglycerol, phosphatidylcholine and sulfoquinovosyldiacylglycerol. The only isoprenoid quinone of 2CG4 T was ubiquinone-10. The DNA G+C content of 2CG4 T was determined to be 69.4 %. The central gene pufLM for the photosynthetic reaction was not detected. No growth occurred for 2CG4 T in the absence of NaCl. On the basis of these data, it is concluded that the 2CG4 T represents a novel species of the genus Halovulum , for which the name Halovulum marinum sp. nov. is proposed. The type strain is 2CG4 T (=CGMCC 1.16468 T =JCM 32611 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.004307
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2020
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 6
    Online Resource
    Online Resource
    Sphingobium wenxiniae sp. nov., a synthetic pyrethroid (SP)-degrading bacterium isolated from activated sludge in an SP-manufacturing wastewater treatment facility
    Microbiology Society ; 2011
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 61, No. 8 ( 2011-08-01), p. 1776-1780
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 61, No. 8 ( 2011-08-01), p. 1776-1780
    Abstract: A synthetic pyrethroid (SP)-degrading bacterial strain, designated JZ-1 T , was isolated from activated sludge of a SP-manufacturing wastewater treatment facility and studied using a polyphasic taxonomic approach. Phylogenetic analysis based on 16S rRNA gene sequences indicated that strain JZ-1 T belonged to the genus Sphingobium , showing highest sequence similarities to Sphingobium faniae DSM 21829 T (98.6 %), Sphingobium cloacae JCM 10874 T (98.5 %), Sphingobium vermicomposti DSM 21299 T (97.4 %) and Sphingobium ummariense CCM 7431 T (96.9 %). The polar lipid pattern, the presence of spermidine and ubiquinone Q-10, the predominance of the cellular fatty acids C 18 : 1 ω7 c , C 19 : 0 cyclo ω8 c , 11 methyl C 18 : 1 ω7 c , C 16 : 0 and C 14 : 0 2-OH, and the G+C content of the genomic DNA also supported the affiliation of the strain with the genus Sphingobium . Strain JZ-1 T showed low DNA–DNA relatedness values with S. faniae DSM 21829 T (30.2 %), S. cloacae JCM 10874 T (23.3 %), S. vermicomposti DSM 21299 T (10.9 %) and S. ummariense CCM 7431 T (7.9 %). Based on its phylogenetic position and its phenotypic and genotypic properties, strain JZ-1 T represents a novel species of the genus Sphingobium , for which the name Sphingobium wenxiniae sp. nov. is proposed. The type strain is JZ-1 T ( = CGMCC 1.7748 T  = DSM 21828 T ).
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijs.0.023309-0
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2011
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 7
    Online Resource
    Online Resource
    Hyphobacterium indicum sp. nov., isolated from deep seawater, and emended description of the genus Hyphobacterium
    Microbiology Society ; 2018
    In:  International Journal of Systematic and Evolutionary Microbiology Vol. 68, No. 12 ( 2018-12-01), p. 3760-3765
    Details
    In: International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, Vol. 68, No. 12 ( 2018-12-01), p. 3760-3765
    Type of Medium: Online Resource
    ISSN: 1466-5026 , 1466-5034
    URL: Article
    DOI: 10.1099/ijsem.0.003054
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2018
    detail.hit.zdb_id: 215062-1
    detail.hit.zdb_id: 2056611-6
    SSG: 12
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  • 8
    Online Resource
    Online Resource
    Isolation and identification of bat viruses closely related to human, porcine and mink orthoreoviruses
    Microbiology Society ; 2015
    In:  Journal of General Virology Vol. 96, No. 12 ( 2015-12-01), p. 3525-3531
    Details
    In: Journal of General Virology, Microbiology Society, Vol. 96, No. 12 ( 2015-12-01), p. 3525-3531
    Abstract: Bats have been identified as natural reservoirs of many viruses, including reoviruses. Recent studies have demonstrated the interspecies transmission of bat reoviruses to humans. In this study, we report the isolation and molecular characterization of six strains of mammalian orthoreovirus (MRV) from Hipposideros and Myotis spp. These isolates were grouped into MRV serotype 1, 2 or 3 based on the sequences of the S1 gene, which encodes the outer coat protein σ1. Importantly, we found that three of six bat MRV strains shared high similarity with MRVs isolated from diseased minks, piglets or humans based on the S1 segment, suggesting that interspecies transmission has occurred between bats and humans or animals. Phylogenetic analyses based on the 10 segments showed that the genomic segments of these bat MRVs had different evolution lineages, suggesting that these bat MRVs may have arisen through reassortment of MRVs of different origins.
    Type of Medium: Online Resource
    ISSN: 0022-1317 , 1465-2099
    URL: Article
    DOI: 10.1099/jgv.0.000314
    RVK:
    XA 53770
    RVK:
    WA 15000
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2015
    detail.hit.zdb_id: 2007065-2
    SSG: 12
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  • 9
    Online Resource
    Online Resource
    Genomic landscape of Epstein–Barr virus in familial nasopharyngeal carcinoma
    Microbiology Society ; 2022
    In:  Journal of General Virology Vol. 103, No. 3 ( 2022-03-29)
    Details
    In: Journal of General Virology, Microbiology Society, Vol. 103, No. 3 ( 2022-03-29)
    Abstract: To better understand the genomic characteristics of Epstein–Barr virus (EBV) in familial nasopharyngeal carcinoma (NPC), we sequenced the EBV genomes by whole-genome capture in 38 unrelated patients with NPC family history in first-degree relatives and 47 healthy controls, including 13 with family history and 34 without. Compared with type 1 reference genome, mutation hotspots were observed in the latent gene regions of EBV in familial NPC cases. Population structure analysis showed that one cluster has a higher frequency in familial cases than in controls (OR=5.33, 95 % CI 2.50–11.33, P =1.42×10 −5 ), and similar population structure composition was observed among familial and sporadic NPC cases in high-endemic areas. By genome-wide association analysis, four variants were found to be significantly associated with familial NPC. Consistent results were observed in the meta-analysis integrating two published case-control EBV sequencing studies in NPC high-endemic areas. High-risk haplotypes of EBV composed of 34 variants were associated with familial NPC risk (OR=13.85, 95 % CI 4.13–46.44, P =2.06×10 −5 ), and higher frequency was observed in healthy blood-relative controls with NPC family history (9/13, 69.23 %) than those without family history (16/34, 47.06%). This study suggested the potential contribution of EBV high-risk subtypes to familial aggregation of NPC.
    Type of Medium: Online Resource
    ISSN: 0022-1317 , 1465-2099
    URL: Article
    DOI: 10.1099/jgv.0.001728
    RVK:
    XA 53770
    RVK:
    WA 15000
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2022
    detail.hit.zdb_id: 2007065-2
    SSG: 12
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  • 10
    Online Resource
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    Characterization and complete genome sequence analysis of novel bacteriophage IME-EFm1 infecting Enterococcus faecium
    Microbiology Society ; 2014
    In:  Journal of General Virology Vol. 95, No. 11 ( 2014-11-01), p. 2565-2575
    Details
    In: Journal of General Virology, Microbiology Society, Vol. 95, No. 11 ( 2014-11-01), p. 2565-2575
    Abstract: We isolated and characterized a novel virulent bacteriophage, IME-EFm1, specifically infecting multidrug-resistant Enterococcus faecium . IME-EFm1 is morphologically similar to members of the family Siphoviridae . It was found capable of lysing a wide range of our E. faecium collections, including two strains resistant to vancomycin. One-step growth tests revealed the host lysis activity of phage IME-EFm1, with a latent time of 30 min and a large burst size of 116 p.f.u. per cell. These biological characteristics suggested that IME-EFm1 has the potential to be used as a therapeutic agent. The complete genome of IME-EFm1 was 42 597 bp, and was linear, with terminally non-redundant dsDNA and a G+C content of 35.2 mol%. The termini of the phage genome were determined with next-generation sequencing and were further confirmed by nuclease digestion analysis. To our knowledge, this is the first report of a complete genome sequence of a bacteriophage infecting E. faecium . IME-EFm1 exhibited a low similarity to other phages in terms of genome organization and structural protein amino acid sequences. The coding region corresponded to 90.7 % of the genome; 70 putative ORFs were deduced and, of these, 29 could be functionally identified based on their homology to previously characterized proteins. A predicted metallo-β-lactamase gene was detected in the genome sequence. The identification of an antibiotic resistance gene emphasizes the necessity for complete genome sequencing of a phage to ensure it is free of any undesirable genes before use as a therapeutic agent against bacterial pathogens.
    Type of Medium: Online Resource
    ISSN: 0022-1317 , 1465-2099
    URL: Article
    DOI: 10.1099/vir.0.067553-0
    RVK:
    XA 53770
    RVK:
    WA 15000
    Language: English
    Publisher: Microbiology Society
    Publication Date: 2014
    detail.hit.zdb_id: 2007065-2
    SSG: 12
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