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  • 1
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    Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs\non banana (2008)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 20 no. 1, pp. 19-37
    Details
    Publication Date: 2024-01-12
    Description: Three species of Mycosphaerella, namely M. eumusae, M. fijiensis, and M. musicola are involved in the Sigatoka disease complex of bananas. Besides these three primary pathogens, several additional species of Mycosphaerella or their anamorphs have been described from Musa. However, very little is known about these taxa, and for the majority of these species no culture or DNA is available for study. In the present study, we collected a global set of Mycosphaerella strains from banana, and compared them by means of morphology and a multi-gene nucleotide sequence data set. The phylogeny inferred from the ITS region and the combined data set containing partial gene sequences of the actin gene, the small subunit mitochondrial ribosomal DNA and the histone H3 gene revealed a rich diversity of Mycosphaerella species on Musa. Integration of morphological and molecular data sets confirmed more than 20 species of Mycosphaerella (incl. anamorphs) to occur on banana. This study reconfirmed the previously described presence of Cercospora apii, M. citri and M. thailandica, and also identified Mycosphaerella communis, M. lateralis and Passalora loranthi on this host. Moreover, eight new species identified from Musa are described, namely Dissoconium musae, Mycosphaerella mozambica, Pseudocercospora assamensis, P. indonesiana, P. longispora, Stenella musae, S. musicola, and S. queenslandica.
    Keywords: Mycosphaerella ; phylogeny ; Sigatoka disease complex ; taxonomy
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 2
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    Re-evaluation of Phytophthora citricola isolates from multiple woody hosts in Europe and North America reveals a new species, Phytophthora plurivora sp. nov (2009)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 22 no. 1, pp. 95-110
    Details
    Publication Date: 2024-01-12
    Description: During large-scale surveys for soilborne Phytophthora species in forests and semi-natural stands and nurseries in Europe during the last decade, homothallic Phytophthora isolates with paragynous antheridia, semipapillate persistent sporangia and a growth optimum around 25 \xc2\xb0C which did not form catenulate hyphal swellings, were recovered from 39 host species in 16 families. Based on their morphological and physiological characters and the similarity of their ITS DNA sequences with P. citricola as designated on GenBank, these isolates were routinely identified as P. citricola. In this study DNA sequence data from the internal transcribed spacer regions (ITS1 and ITS2) and 5.8S gene of the rRNA operon, the mitochondrial cox1 and \xce\xb2-tubulin genes were used in combination with morphological and physiological characteristics to characterise these isolates and compare them to the ex-type and the authentic type isolates of P. citricola, and two other taxa of the P. citricola complex, P. citricola I and the recently described P. multivora. Due to their unique combination of morphological, physiological and molecular characters these semipapillate homothallic isolates are described here as a new species, P. plurivora sp. nov.
    Keywords: Beech ; citricola ; decline ; dieback ; forest ; multivora ; nursery ; oak ; phylogeny
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 3
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    Vertebral number is highly evolvable in salamanders and newts (family Salamandridae) and variably associated with climatic parameters (2015)
    In:  Contributions to Zoology vol. 84 no. 2, pp. 85-113
    Details
    Publication Date: 2024-01-12
    Description: In vertebrates, the relative proportion of the number of trunk and caudal vertebrae is an important determinant of body shape. While among amphibians frogs and toads show low variation in vertebrae numbers, in salamanders the numbers of trunk and caudal vertebrae vary widely, giving rise to phenotypes in the range from short-bodied and long-tailed to long-bodied and short-tailed. We analysed vertebral numbers in the family Salamandridae in a phylogenetic context and calculated the relationship between vertebral changes and changes in climate and other environmental parameters. A significant association was found between morphological change with precipitation and temperature. However, annual precipitation affected the two main groups of salamandrid salamanders differently, with trunk elongation in the terrestrial \xe2\x80\x98true salamanders\xe2\x80\x99 and tail elongation in the more aquatic \xe2\x80\x98newts\xe2\x80\x99. A - male biased - sexual dimorphism was only observed in Lissotriton vulgaris vulgaris in the number of trunk vertebrae and in Ommatotriton ophryticus and Lissotriton species for the number of caudal vertebrae. Our data indicated that the number of trunk and caudal vertebrae are highly evolvable traits with frequent evolutionary reversals. In some groups (e.g. Cynops, Lyciasalamandra, Neurergus and the Laotriton-Pachytriton-Paramesotriton clade) the number of trunk vertebrae is stable, while in many groups it is subject to change (e.g. Tylototriton). This latter, species-rich genus appears to be an excellent group to further test effects of the environment on body shape.
    Keywords: ancestral character states ; body shape ; climatic niche ; comparative method ; phylogeny ; vertebral column
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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    Format: text/plain
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  • 4
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    The Emerging Field of Geoethics (2018)
    John Wiley & Sons, Inc. - American Geophysical Union
    Details
    Publication Date: 2019-03-27
    Description: The geosciences need practitioners who possess an ethical conscience and the desire to act responsibly. Ethically responsible geoscientists will achieve success and satisfaction by carrying out excellent research and professional activities, and by maintaining honest and open collaborations with colleagues. Such individuals will be able to contribute to building a resilient society, be better prepared to face global economic and environmental challenges and be willing to take concrete actions for the conservation of the geo‐environment. Geoethics provides ethical, social, and cultural values for the scientific community and for society as a whole. Geoethics represents a new vision of a world in which it is possible to maintain a more balanced relationship between humans and nature, considering modern economic and social development expectations. This chapter illustrates some aspects of geoethics, provides an overview of its basic values and themes, and highlights prominent global issues that involve geoethics, including climate change, geo‐risks, land management, exploitation of geo‐resources, and sustainability. The International Association for Promoting Geoethics (IAPG) provides a multidisciplinary platform for discussion, a place where multidisciplinary collaboration can strengthen the development of geoethics from a scientific and philosophical perspective, in order to better introduce geoethical values into society.
    Description: Published
    Description: 175-212
    Description: 4SR TERREMOTI - Preparazione alla comunicazione in emergenza
    Description: 6SR VULCANI – Servizi e ricerca per la società
    Description: 7SR AMBIENTE – Servizi e ricerca per la società
    Description: 1TM. Formazione
    Description: 2TM. Divulgazione Scientifica
    Description: 3TM. Comunicazione
    Keywords: geoethics ; geoeducation ; geoscience communication ; georisks ; geo-resources ; research integrity ; geoethical promise ; professionalism ; responsibility ; society ; 05.03. Educational, History of Science, Public Issues ; 05.09. Miscellaneous ; 05.08. Risk ; 04.04. Geology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: book chapter
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  • 5
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    Integrative Post-event Impact Assessment Framework for Volcanic Eruptions: A Disaster Forensic Investigation of the 2011–2012 Eruption of the Cordón Caulle Volcano (Chile) (2021)
    Frontiers
    Details
    Publication Date: 2021-07-07
    Description: Understanding the complexity of future volcanic impacts that can be potentially induced by the large variability of volcanic hazards and the multiple dimensions of vulnerability of the increasingly interdependent and interconnected societies, requires an in-depth analysis of past events. A structured and inclusive post-event impact assessment framework is proposed and applied for the evaluation of damage and disruption on critical infrastructures caused by the eruption of the Cordón Caulle volcano (Chile) in 2011–2012. This framework is built on the forensic analysis of disasters combined with the techniques of the root cause analysis that converge in a bow-tie tool. It consists of a fault tree connected to subsequent event trees to describe the causal order of impacts. Considering the physical and systemic dimensions of vulnerability, four orders of impact have been identified: i) the first order refers to the physical damage or the primary impact on a component of the critical infrastructure; ii) the second order refers to the loss of functionality in the system due to a physical damage on key components of the system; iii) the third order refers to the systemic impact due to the interdependency and connectivity among different critical infrastructures; and iv) a higher order is related to the consequences on the main economic sectors and to social disruption that can activate an overall damage to the economy of the country or countries affected. Our study in the Argentinian Patagonia shows that the long-lasting impact of the 2011–2012 Cordón Caulle eruption is mostly due to a secondary hazard (i.e., wind remobilisation of ash), which exacerbated the primary impact affecting significantly larger areas and for longer time with respect to primary tephra deposition. In addition, systemic vulnerability, particularly the intrinsic dependencies within and among systems, played a major role in the cascading impact of the analysed communities.
    Description: This study was supported by the Swiss National Science Foundation (200021–163152).
    Description: Published
    Description: 645945
    Description: 6V. Pericolosità vulcanica e contributi alla stima del rischio
    Description: JCR Journal
    Keywords: impact assessment ; volcanic eruptions ; forensic analysis ; systemic vulnerability ; cascading effects ; bow-tie approach ; 04.08. Volcanology ; 05.08. Risk
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 6
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    Phytophthora multivora sp. nov., a new species recovered from declining Eucalyptus, Banksia, Agonis and other plant species in Western Australia (2009)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 22 no. 1, pp. 1-13
    Details
    Publication Date: 2024-01-12
    Description: A new Phytophthora species, isolated from rhizosphere soil of declining or dead trees of Eucalyptus gomphocephala, E. marginata, Agonis flexuosa, and another 13 plant species, and from fine roots of E. marginata and collar lesions of Banksia attenuata in Western Australia, is described as Phytophthora multivora sp. nov. It is homothallic and produces semipapillate sporangia, smooth-walled oogonia containing thick-walled oospores, and paragynous antheridia. Although morphologically similar to P. citricola, phylogenetic analyses of the ITS and cox1 gene regions demonstrate that P. multivora is unique. Phytophthora multivora is pathogenic to bark and cambium of E. gomphocephala and E. marginata and is believed to be involved in the decline syndrome of both eucalypt species within the tuart woodland in south-west Western Australia.
    Keywords: Decline ; dieback ; forest ; jarrah ; phylogeny ; Phytophthora citricola ; tuart
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 7
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    Multiple new Phytophthora species from ITS Clade 6 associated with natural ecosystems in Australia: evolutionary and ecological implications (2011)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 26 no. 1, pp. 13-39
    Details
    Publication Date: 2024-01-12
    Description: During surveys of dying vegetation in natural ecosystems and associated waterways in Australia many new taxa have been identified from Phytophthora ITS Clade 6. For representative isolates, the region spanning the internal transcribed spacer region of the ribosomal DNA, the nuclear gene encoding heat shock protein 90 and the mitochondrial cox1 gene were PCR amplified and sequenced. Based on phylogenetic analysis and morphological and physiological comparison, four species and one informally designated taxon have been described; Phytophthora gibbosa, P. gregata, P. litoralis, P. thermophila and P. taxon paludosa. Phytophthora gibbosa, P. gregata and P. taxon paludosa form a new cluster and share a common ancestor; they are homothallic and generally associated with dying vegetation in swampy or water-logged areas. Phytophthora thermophila and P. litoralis are sister species to each other and more distantly to P. gonapodyides. Both new species are common in waterways and cause scattered mortality within native vegetation. They are self-sterile and appear well adapted for survival in an aquatic environment and inundated soils, filling the niche occupied by P. gonapodyides and P. taxon salixsoil in the northern hemisphere. Currently the origin of these new taxa, their pathogenicity and their role in natural ecosystems are unknown. Following the precautionary principle, they should be regarded as a potential threat to native ecosystems and managed to minimise their further spread.
    Keywords: Aquatic habitat ; breeding systems ; evolution ; phylogeny ; radiation ; sterility ; survival
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 8
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    A scoping review of seismic risk communication in Europe (2024)
    Frontiers S.A.
    Details
    Publication Date: 2024-01-25
    Description: Although earthquakes are a threat in many countries and considerable resources have been invested in safety regulations, communities at risk often lack awareness and preparedness. Risk communication is a key tool for building resilient communities, raising awareness, and increasing preparedness. Over the past 2 decades, seismic risk communication has evolved significantly. This has led to a reorientation from a predominantly “one-way”, top-down communication model to the promotion of new models in which people, their needs, and their participation in disaster risk management are central elements. The 2015–2030 Sendai Framework recommendations, recent disaster experiences and research have highlighted that new models can improve communication effectiveness. In this paper, we critically explore this transition by conducting a scoping review (n=109 publications) of seismic risk communication in Europe. We analyse the approaches, messages, tools, and channels used for seismic risk communication and how they have changed over time. The results reveal that the stated goals of seismic risk communication are, in decreasing order, to share information, raise awareness, change behaviours/beliefs, and increase preparedness. Pupils, students, and citizens are the primary recipients of communication activities. Over the years, two trends have emerged. First, “two-way”, transdisciplinary and bottom-up communication models prevailed over the “one-way” model. Second, communication aimed more at promoting proactive behaviours than just informing the public. Face-to-face, hands-on activities, and serious games are key tools to engage with the public. The results also reveal the emerging role of social media to target different audiences/social groups. Strikingly, only one-fifth of the analysed publications explicitly build on or tests risk communication theories. Future research could focus on comparing practices across countries and risks (e.g., earthquakes and floods) and on innovating communication theories and methodologies, especially by incorporating the role of information technologies and social media.
    Description: Published
    Description: 1155576
    Description: OST2 Deformazione e Hazard sismico e da maremoto
    Description: JCR Journal
    Keywords: Seismic risk ; communication ; Europe ; scoping review ; 05.08. Risk ; 04.06. Seismology
    Repository Name: Istituto Nazionale di Geofisica e Vulcanologia (INGV)
    Type: article
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  • 9
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    Fungi of quarantine concern for China I: Dothideomycetes (2021)
    Naturalis Biodiversity Center
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 47, pp. 45-105
    Details
    Publication Date: 2024-04-09
    Description: The current list of Chinese quarantine pests includes 130 fungal species. However, recent changes in the taxonomy of fungi following the one fungus = one name initiative and the implementation of DNA phylogeny in taxonomic revisions, resulted in many changes of these species names, necessitating an update of the current list. In addition, many quarantine fungi lack modern morphological descriptions and authentic DNA sequences, posing significant challenges for the development of diagnostic protocols. The aim of the present study was to review the taxonomy and names of the 33 Chinese quarantine fungi in Dothideomycetes, and provide reliable DNA barcodes to facilitate rapid identification. Of these, 23 names were updated according to the single name nomenclature system, including one new combination, namely Cophinforma tumefaciens comb. nov. (syn. Sphaeropsis tumefaciens). On the basis of phylogenetic analyses and morphological comparisons, a new genus Xenosphaeropsis is introduced to accommodate the monotypic species Xenosphaeropsis pyriputrescens comb. nov. (syn. Sphaeropsis pyriputrescens), the causal agent of a post-harvest disease of pears. Furthermore, four lectotypes (Ascochyta petroselini, Mycosphaerella ligulicola, Physalospora laricina, Sphaeria lingam), three epitypes (Ascochyta petroselini, Phoma lycopersici, Sphaeria lingam), and two neotypes (Ascochyta pinodella, Deuterophoma tracheiphila) are designated to stabilise the use of these names. A further four reference strains are introduced for Cophinforma tumefaciens, Helminthosporium solani, Mycocentro spora acerina, and Septoria linicola. In addition, to assist future studies on these important pathogens, we sequenced and assembled whole genomes for 17 species, including Alternaria triticina, Boeremia foveata, B. lycopersici, Cladosporium cucumerinum, Didymella glomerata, Didymella pinodella, Diplodia mutila, Helminthosporium solani, Mycocentrospora acerina, Neofusicoccum laricinum, Parastagonospora pseudonodorum, Plenodomus libanotidis, Plenodomus lingam, Plenodomus tracheiphilus, Septoria petroselini, Stagonosporopsis chrysanthemi, and Xenosphaeropsis pyriputrescens.
    Keywords: Ecology ; Evolution ; Behavior and Systematics ; Chinese quarantine fungi ; DNA barcodes ; genomes ; morphology ; new taxa ; phylogeny ; plant pathogens ; typification
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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  • 10
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    Malassezia vespertilionis sp. nov.: a new cold-tolerant species of yeast isolated from bats (2018)
    In:  Persoonia - Molecular Phylogeny and Evolution of Fungi vol. 41, pp. 56-70
    Details
    Publication Date: 2024-01-12
    Description: Malassezia is a genus of medically-important, lipid-dependent yeasts that live on the skin of warmblooded animals. The 17 described species have been documented primarily on humans and domestic animals, but few studies have examined Malassezia species associated with more diverse host groups such as wildlife. While investigating the skin mycobiota of healthy bats, we isolated a Malassezia sp. that exhibited only up to 92 % identity with other known species in the genus for the portion of the DNA sequence of the internal transcribed spacer region that could be confidently aligned. The Malassezia sp. was cultured from the skin of nine species of bats in the subfamily Myotinae; isolates originated from bats sampled in both the eastern and western United States. Physiological features and molecular characterisation at seven additional loci (D1/D2 region of 26S rDNA, 18S rDNA, chitin synthase, second largest subunit of RNA polymerase II, \xce\xb2-tubulin, translation elongation factor EF-1\xce\xb1, and minichromosome maintenance complex component 7) indicated that all of the bat Malassezia isolates likely represented a single species distinct from other named taxa. Of particular note was the ability of the Malassezia sp. to grow over a broad range of temperatures (7\xe2\x80\x9340 \xc2\xb0C), with optimal growth occurring at 24 \xc2\xb0C. These thermal growth ranges, unique among the described Malassezia, may be an adaptation by the fungus to survive on bats during both the host\xe2\x80\x99s hibernation and active seasons. The combination of genetic and physiological differences provided compelling evidence that this lipid-dependent yeast represents a novel species described herein as Malassezia vespertilionis sp. nov. Whole genome sequencing placed the new species as a basal member of the clade containing the species M. furfur, M. japonica, M. obtusa, and M. yamatoensis. The genetic and physiological uniqueness of Malassezia vespertilionis among its closest relatives may make it important in future research to better understand the evolution, life history, and pathogenicity of the Malassezia yeasts.
    Keywords: Chiroptera ; evolution ; hibernation ; Malassezia ; Myotis ; new species ; phylogeny
    Repository Name: National Museum of Natural History, Netherlands
    Type: info:eu-repo/semantics/article
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