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  • 2020-2024  (45)
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  • 1
    Publication Date: 2024-02-07
    Description: Despite low temperatures, poor nutrient levels and high pressure, microorganisms thrive in deep-sea environments of polar regions. The adaptability to such extreme environments renders deep-sea microorganisms an encouraging source of novel, bioactive secondary metabolites. In this study, we isolated 77 microorganisms collected by a remotely operated vehicle from the seafloor in the Fram Strait, Arctic Ocean (depth of 2454 m). Thirty-two bacteria and six fungal strains that represented the phylogenetic diversity of the isolates were cultured using an One-Strain-Many-Compounds (OSMAC) approach. The crude EtOAc extracts were tested for antimicrobial and anticancer activities. While antibacterial activity against methicillin-resistant Staphylococcus aureus (MRSA) and Enterococcus faecium was common for many isolates, only two bacteria displayed anticancer activity, and two fungi inhibited the pathogenic yeast Candida albicans. Due to bioactivity against C. albicans and rich chemical diversity based on molecular network-based untargeted metabolomics, Aspergillus versicolor PS108-62 was selected for an in-depth chemical investigation. A chemical work-up of the SPE-fractions of its dichloromethane subextract led to the isolation of a new PKS-NRPS hybrid macrolactone, versicolide A (1), a new quinazoline (−)-isoversicomide A (3), as well as three known compounds, burnettramic acid A (2), cyclopenol (4) and cyclopenin (5). Their structures were elucidated by a combination of HRMS, NMR, [α]D, FT-IR spectroscopy and computational approaches. Due to the low amounts obtained, only compounds 2 and 4 could be tested for bioactivity, with 2 inhibiting the growth of C. albicans (IC50 7.2 µg/mL). These findings highlight, on the one hand, the vast potential of the genus Aspergillus to produce novel chemistry, particularly from underexplored ecological niches such as the Arctic deep sea, and on the other, the importance of untargeted metabolomics for selection of marine extracts for downstream chemical investigations.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
    Format: archive
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2023-03-25
    Description: Impact of Local Iron Enrichment on the Small Benthic Biota in the deep Arctic Ocean The study assesses the impact of local iron enrichment on the small benthic biota (bacteria, meiofauna) together with environmental parameters indicating the input of food at the deep seafloor. To evaluate the hypothesis that abundance, distribution, and diversity of the small benthic biota varies in relation to a local input of structural steel at the seabed, we analyzed sediment samples and the associated infauna along a short transect with increasing distance to an iron source, i.e., corroding steel weights of a free-falling observational platform (bottom-lander), lying on the seafloor for approximately seven years. Iron-enriched surface sediments in the vicinity of the bottom-weight left in summer 2008 after a short-term deployment of a bottom-lander in 2433 m water depth at the LTER (Long-Term Ecological Research) observation HAUSGARTEN in eastern parts of the Fram Strait were sampled on 28th July 2015 using push-corer (PC) handled by the Remotely Operated Vehicle (ROV) QUEST 4000 (MARUM Center for Marine Environmental Sciences, Germany) during Dive 369 from board RV Polarstern. The block-shaped steel bottom-weights (30 x 30 x 6 cm) were sitting about half of the height sunken into the seafloor and thus, almost not affecting near-bottom currents. During sampling in 2015, the plates were largely corroded. Surface sediments around the plates had an orange-red color with a gradient of decreasing color intensity with increasing distance from the source, i.e., the bottom weight. A total of eight push-corer samples (PC1-8) were taken at approx. regular distances (on average every 18 cm) along a short transect (about 1.5 m) crossing the iron gradient. Push-corers PC1-4 retrieved sediment from heavily impacted sediments, while samples taken from push-corers PC5-8 were visually indistinguishable from background sediments in the wider area. After recovery of the ROV, sediment cores (8 cm in diameter, and 20-25 cm in height) were sub-sampled using plastic syringes with cut-off anterior ends for meiofauna and nematode communities as well as for environmental parameters. The position specified in the data sets (longitude / latitude) refers to the position of the ROV.
    Keywords: Deep sea; Hausgarten; iron; Long-term Investigation at AWI-Hausgarten off Svalbard; meiofauna; Nematoda; sediments
    Type: Dataset
    Format: application/zip, 3 datasets
    Location Call Number Limitation Availability
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  • 3
    Publication Date: 2023-07-10
    Description: These data represent the results of a long-term colonization experiment at the Long-Term Ecological Research observatory HAUSGARTEN. Recruitment panels were constructed from plastic and brick and deployed attached to a metal frame in 1999 at the station HG-IV (Arctic Ocean, 79 N, 04 E, 2500 m depth). The experiment was recovered in 2017. Following recovery, all invertebrates and foraminiferans on the panels were counted using a dissecting microscope on board R/V Polarstern and then saved in 95% ethanol. Species were identified by reference to published literature and taxonomic experts. Species richness was low compared to surrounding hard-bottom communities, indicating that Arctic benthic communities may take decades to develop.
    Keywords: Amphianthus sp.; Angle; ARK-XV/1; ARK-XXXI/3; Bathycrinus carpenterii; Bathyphellia margaritacea; Bivalvia; Cibicides sp.; Cibicidoides wuellerstorfi; Cladorhiza; Encrusting, large-grain tube; Foraminifera, benthic agglutinated; Foraminifera, benthic indeterminata; Gersemia rubiformis; Halisiphonia arctica, cover; Hausgarten; HG-IV_colonization_frame; invertebrate; Long-term Investigation at AWI-Hausgarten off Svalbard; Material; MF; Multi frame; North Greenland Sea; Number of individuals; Phakellia sp.; Plate; Polarstern; Porifera indeterminata; Position; PS108; PS108_30-1; PS108_30-1, PS55/001-1; PS55; PS55/001-1; recruitment; Remote operated vehicle; ROV; Serpulidae; Shannon Diversity Index; Simpson index of diversity; Species richness; Spirorbidae; Thenea abyssorum; Unknown; VICTOR; Victor6000 ROV; Worm tubes
    Type: Dataset
    Format: text/tab-separated-values, 957 data points
    Location Call Number Limitation Availability
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  • 4
    Publication Date: 2023-07-10
    Description: Impact of Local Iron Enrichment on the Small Benthic Biota in the deep Arctic Ocean The study assesses the impact of local iron enrichment on the small benthic biota (bacteria, meiofauna) together with environmental parameters indicating the input of food at the deep seafloor. To evaluate the hypothesis that abundance, distribution, and diversity of the small benthic biota varies in relation to a local input of structural steel at the seabed, we analyzed sediment samples and the associated infauna along a short transect with increasing distance to an iron source, i.e., corroding steel weights of a free-falling observational platform (bottom-lander), lying on the seafloor for approximately seven years. Iron-enriched surface sediments in the vicinity of the bottom-weight left in summer 2008 after a short-term deployment of a bottom-lander in 2433 m water depth at the LTER (Long-Term Ecological Research) observation HAUSGARTEN in eastern parts of the Fram Strait were sampled on 28th July 2015 using push-corer (PC) handled by the Remotely Operated Vehicle (ROV) QUEST 4000 (MARUM Center for Marine Environmental Sciences, Germany) during Dive 369 from board RV Polarstern. The block-shaped steel bottom-weights (30 x 30 x 6 cm) were sitting about half of the height sunken into the seafloor and thus, almost not affecting near-bottom currents. During sampling in 2015, the plates were largely corroded. Surface sediments around the plates had an orange-red color with a gradient of decreasing color intensity with increasing distance from the source, i.e., the bottom weight. A total of eight push-corer samples (PC1-8) were taken at approx. regular distances (on average every 18 cm) along a short transect (about 1.5 m) crossing the iron gradient. Push-corers PC1-4 retrieved sediment from heavily impacted sediments, while samples taken from push-corers PC5-8 were visually indistinguishable from background sediments in the wider area. After recovery of the ROV, sediment cores (8 cm in diameter, and 20-25 cm in height) were sub-sampled using plastic syringes with cut-off anterior ends for meiofauna and nematode communities as well as for environmental parameters. The position specified in the data sets (longitude / latitude) refers to the position of the ROV.
    Keywords: Abundance; ARK-XXIX/2.2; Biomass, dry mass; Core; DATE/TIME; Deep sea; Depth, bathymetric; DEPTH, sediment/rock; Gear; Genus; Genus, unique identification (Semantic URI); Genus, unique identification (URI); Hausgarten; iron; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; Long-term Investigation at AWI-Hausgarten off Svalbard; meiofauna; Nematoda; North Greenland Sea; Polarstern; PS93/076-1; PS93.2; Remote operated vehicle; ROV; sediments
    Type: Dataset
    Format: text/tab-separated-values, 2621 data points
    Location Call Number Limitation Availability
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  • 5
    Publication Date: 2023-10-12
    Description: Impact of Local Iron Enrichment on the Small Benthic Biota in the deep Arctic Ocean The study assesses the impact of local iron enrichment on the small benthic biota (bacteria, meiofauna) together with environmental parameters indicating the input of food at the deep seafloor. To evaluate the hypothesis that abundance, distribution, and diversity of the small benthic biota varies in relation to a local input of structural steel at the seabed, we analyzed sediment samples and the associated infauna along a short transect with increasing distance to an iron source, i.e., corroding steel weights of a free-falling observational platform (bottom-lander), lying on the seafloor for approximately seven years. Iron-enriched surface sediments in the vicinity of the bottom-weight left in summer 2008 after a short-term deployment of a bottom-lander in 2433 m water depth at the LTER (Long-Term Ecological Research) observation HAUSGARTEN in eastern parts of the Fram Strait were sampled on 28th July 2015 using push-corer (PC) handled by the Remotely Operated Vehicle (ROV) QUEST 4000 (MARUM Center for Marine Environmental Sciences, Germany) during Dive 369 from board RV Polarstern. The block-shaped steel bottom-weights (30 x 30 x 6 cm) were sitting about half of the height sunken into the seafloor and thus, almost not affecting near-bottom currents. During sampling in 2015, the plates were largely corroded. Surface sediments around the plates had an orange-red color with a gradient of decreasing color intensity with increasing distance from the source, i.e., the bottom weight. A total of eight push-corer samples (PC1-8) were taken at approx. regular distances (on average every 18 cm) along a short transect (about 1.5 m) crossing the iron gradient. Push-corers PC1-4 retrieved sediment from heavily impacted sediments, while samples taken from push-corers PC5-8 were visually indistinguishable from background sediments in the wider area. After recovery of the ROV, sediment cores (8 cm in diameter, and 20-25 cm in height) were sub-sampled using plastic syringes with cut-off anterior ends for meiofauna and nematode communities as well as for environmental parameters. The position specified in the data sets (longitude / latitude) refers to the position of the ROV.
    Keywords: ARK-XXIX/2.2; Bacteria, cells; Chlorophyll a; Chloroplastic pigment equivalents per volume; Core; DATE/TIME; Deep sea; Depth, bathymetric; DEPTH, sediment/rock; Gear; Hausgarten; iron; Iron; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; Long-term Investigation at AWI-Hausgarten off Svalbard; meiofauna; Nematoda; North Greenland Sea; Phaeopigments; Polarstern; PS93/076-1; PS93.2; Remote operated vehicle; ROV; Sediment, ash free dry mass; sediments; Water content, sediment
    Type: Dataset
    Format: text/tab-separated-values, 395 data points
    Location Call Number Limitation Availability
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  • 6
    Publication Date: 2023-11-23
    Description: Impact of Local Iron Enrichment on the Small Benthic Biota in the deep Arctic Ocean The study assesses the impact of local iron enrichment on the small benthic biota (bacteria, meiofauna) together with environmental parameters indicating the input of food at the deep seafloor. To evaluate the hypothesis that abundance, distribution, and diversity of the small benthic biota varies in relation to a local input of structural steel at the seabed, we analyzed sediment samples and the associated infauna along a short transect with increasing distance to an iron source, i.e., corroding steel weights of a free-falling observational platform (bottom-lander), lying on the seafloor for approximately seven years. Iron-enriched surface sediments in the vicinity of the bottom-weight left in summer 2008 after a short-term deployment of a bottom-lander in 2433 m water depth at the LTER (Long-Term Ecological Research) observation HAUSGARTEN in eastern parts of the Fram Strait were sampled on 28th July 2015 using push-corer (PC) handled by the Remotely Operated Vehicle (ROV) QUEST 4000 (MARUM Center for Marine Environmental Sciences, Germany) during Dive 369 from board RV Polarstern. The block-shaped steel bottom-weights (30 x 30 x 6 cm) were sitting about half of the height sunken into the seafloor and thus, almost not affecting near-bottom currents. During sampling in 2015, the plates were largely corroded. Surface sediments around the plates had an orange-red color with a gradient of decreasing color intensity with increasing distance from the source, i.e., the bottom weight. A total of eight push-corer samples (PC1-8) were taken at approx. regular distances (on average every 18 cm) along a short transect (about 1.5 m) crossing the iron gradient. Push-corers PC1-4 retrieved sediment from heavily impacted sediments, while samples taken from push-corers PC5-8 were visually indistinguishable from background sediments in the wider area. After recovery of the ROV, sediment cores (8 cm in diameter, and 20-25 cm in height) were sub-sampled using plastic syringes with cut-off anterior ends for meiofauna and nematode communities as well as for environmental parameters. The position specified in the data sets (longitude / latitude) refers to the position of the ROV.
    Keywords: ARK-XXIX/2.2; Bivalvia; Core; DATE/TIME; Deep sea; Depth, bathymetric; DEPTH, sediment/rock; Foraminifera; Gastrotricha; Gear; Harpacticoida; Hausgarten; iron; Kinorhyncha; Latitude of event; Latitude of event 2; Longitude of event; Longitude of event 2; Long-term Investigation at AWI-Hausgarten off Svalbard; meiofauna; Nematoda; North Greenland Sea; Ostracoda; Polarstern; Polychaeta; PS93/076-1; PS93.2; Remote operated vehicle; ROV; sediments; Tantulocarida; Tardigrada
    Type: Dataset
    Format: text/tab-separated-values, 560 data points
    Location Call Number Limitation Availability
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  • 7
    Publication Date: 2024-02-02
    Description: Upper-ocean velocities along the cruise track of Maria S. Merian cruise MSM108 were continuously collected by a vessel-mounted Teledyne RD Instruments 38 kHz Ocean Surveyor ADCP. The transducer was located at 6.0 m below the water line. The instrument was operated in narrowband mode with 32 m bins and a blanking distance of 16.0 m, while 50 bins were recorded using a pulse of 2.81 s. The ship's velocity was calculated from position fixes obtained by the Global Positioning System (GPS). Heading, pitch and roll data from the ship's gyro platforms and the navigation data were used by the data acquisition software VmDas internally to convert ADCP velocities into earth coordinates. Accuracy of the ADCP velocities mainly depends on the quality of the position fixes and the ship's heading data. Further errors stem from a misalignment of the transducer with the ship's centerline. Data post-processing included water track calibration of the misalignment angle (0.38° +/- 0.6278°) and scale factor (0.9954 +/- 0.0083) of the Ocean Surveyor signal. The average interval was set to 120 s. Velocity quality flagging is based on following threshold criteria: abs(UC) or abs(VC) 〉 1.5 m/s, rms(UC_z) or rms(VC_z) 〉 0.3.
    Keywords: Current velocity, east-west; Current velocity, north-south; DAM_Underway; DAM Underway Research Data; DATE/TIME; DEPTH, water; Echo intensity, relative; FRAM 2022; LATITUDE; LONGITUDE; Maria S. Merian; MSM108; MSM108_0_Underway-3; Pings, averaged to a double ensemble value; Quality flag, current velocity; Seadatanet flag: Data quality control procedures according to SeaDataNet (2010); Vessel mounted Acoustic Doppler Current Profiler [38 kHz]; VMADCP-38
    Type: Dataset
    Format: text/tab-separated-values, 2176330 data points
    Location Call Number Limitation Availability
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  • 8
    Publication Date: 2024-02-02
    Description: Underway temperature and salinity data was collected along the cruise track with two autonomous measurement systems. Usually, the systems are changed after 6 hours. While temperature is taken at the water inlet in about 6.5 m depth, salinity is estimated within the interior measurement container from conductivity and interior temperature. No temperature and salinity calibration was performed. For details to all processing steps see Data Processing Report.
    Keywords: Calculated from internal temperature and conductivity; Conductivity; DAM_Underway; DAM Underway Research Data; DATE/TIME; DEPTH, water; Digital oceanographic thermometer, Sea-Bird, SBE 38; FRAM 2022; LATITUDE; LONGITUDE; Maria S. Merian; Measurement container; MSM108; MSM108_0_Underway-4; Quality flag, salinity; Quality flag, water temperature; Salinity; Seadatanet flag: Data quality control procedures according to SeaDataNet (2010); Temperature, water; Temperature, water, internal; Thermosalinograph; Thermosalinograph, Sea-Bird, SBE 45; TSG
    Type: Dataset
    Format: text/tab-separated-values, 236872 data points
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  • 9
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    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2024-03-08
    Description: This dataset contains processed ocean temperature and salinity data at a depth of 11m along the cruise track. Raw data acquired by two SBE21 thermosalinographs and two auxiliary SBE38 temperature sensors (Sea-Bird Scientific, USA) installed in an underway seawater flow-through system on board RV Polarstern were processed to yield a calibrated and validated data set of temperature and salinity along the cruise track. Data were downloaded from DAVIS SHIP data base (https://dship.awi.de) at a resolution of 1 sec, and converted to temperature and conductivity using the pre-deployment factory calibration coefficients. The converted data were averaged to 1 min values, outliers were removed, and sensor drift was corrected using coefficients obtained from a post-season calibration performed at Sea-Bird at the end of the measurement season. Salinity was calculated from internal temperature, conductivity and pressure according to the PSS-78 Practical Salinity Scale. Processed data are provided as 1 min means of seawater temperature, conductivity and salinity, aligned with position data taken from the master track. Quality flags are appended according to the SeaDataNet Data Quality Control Procedures (version from May 2010). More details are described in the attached processing report.
    Keywords: AWI_PhyOce; Calculation according to Practical Salinity Scale PSS-78, Lewis and Perkin (1981); Conductivity; DAM_Underway; DAM Underway Research Data; DATE/TIME; DEPTH, water; Digital oceanographic thermometer, Sea-Bird, SBE 38; GPF 20-1_021; LATITUDE; LONGITUDE; North Sea; Physical Oceanography @ AWI; Polarstern; PS126; PS126_0_Underway-23; PS126_0_Underway-24; Quality flag, salinity; Quality flag, water temperature; Salinity; Seadatanet flag: Data quality control procedures according to SeaDataNet (2010); T/S data; Temperature, water; Temperature, water, internal; Thermosalinograph; Thermosalinograph (TSG), Sea-Bird, SBE 21 SEACAT; TSG
    Type: Dataset
    Format: text/tab-separated-values, 276042 data points
    Location Call Number Limitation Availability
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  • 10
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    Unknown
    PANGAEA
    In:  Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven
    Publication Date: 2024-03-08
    Description: Raw data acquired by two thermosalinographs (SBE21, SeaBird GmbH) on board RV POLARSTERN were processed to receive a calibrated and validated data set of temperature and salinity during expedition PS126. Data were downloaded from DAVIS SHIP data base (https://dship.awi.de) with a resolution of 1 sec. Both sensors were equipped with an additional external temperature sensor (SBE38, Sea-Bird GmbH). The raw data are converted to temperature and conductivity values using the calibration coefficients from the calibration before deployment. However, data can only be finally processed after replacement and renewed calibration because correction values for the sensor drift can only be obtained by the post cruise calibration. Thermosalinographs on board RV Polarstern are exchanged about once a year and calibration procedures are conducted after every exchange. Salinity was calculated according to the instructions from the Practical Salinity Scale PSS-78 using the obtained internal temperature and conductivity data. Processing and evaluation of the data is outlined in the data processing report found at EPIC repository https://hdl.handle.net/10013/epic.e9b67f8a-dc1e-4f43-b56d-cfddc20d3c63. Processed data are provided as 10min means of salinity and water temperature aligned with position data taken from master track of the respective cruise.
    Keywords: AWI_PhyOce; Calculated from internal temperature and conductivity; Conductivity; DAM_Underway; DAM Underway Research Data; DATE/TIME; Digital oceanographic thermometer, Sea-Bird, SBE 38; GPF 20-1_021; LATITUDE; LONGITUDE; North Sea; Physical Oceanography @ AWI; Polarstern; PS126; PS126_0_Underway-23; PS126_0_Underway-24; Salinity; T/S data; Temperature, water; Temperature, water, internal; Thermosalinograph; Thermosalinograph (TSG), Sea-Bird, SBE 21 SEACAT; TSG
    Type: Dataset
    Format: text/tab-separated-values, 12424 data points
    Location Call Number Limitation Availability
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