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  • 1
    Publication Date: 2012-06-28
    Description: SUMO conjugation has emerged as a dynamic process in regulating protein function. Here we identify estrogen receptor β (ERβ) to be a new target of SUMO-1. ERβ SUMO-1 modification occurs on a unique nonconsensus sumoylation motif which becomes fully competent upon phosphorylation of its contained serine residue, which provides the essential negative charge for sumoylation. This process is further regulated by phosphorylation of additional adjacent serine residues by glycogen synthase kinase 3β (GSK3β), which maximizes ERβ sumoylation in response to hormone. SUMO-1 attachment prevents ERβ degradation by competing with ubiquitin at the same acceptor site and dictates ERβ transcriptional inhibition by altering estrogen-responsive target promoter occupancy and gene expression in breast cancer cells. These findings uncovered a novel p hosphorylated su moylation m otif (pSuM), which consists of the sequence KXS (where represents a large hydrophobic residue) and which is connected to a GSK3-activated extension that functions as a SUMO enhancer. This extended pSuM offers a valuable signature to predict SUMO substrates under protein kinase regulation.
    Print ISSN: 0270-7306
    Electronic ISSN: 1098-5549
    Topics: Biology , Medicine
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  • 2
    Publication Date: 2011-06-22
    Description: The heteromeric inwardly rectifying Kir4.1/Kir5.1 K+ channel underlies the basolateral K+ conductance in the distal nephron and is extremely sensitive to inhibition by intracellular pH. The functional importance of Kir4.1/Kir5.1 in renal ion transport has recently been highlighted by mutations in the human Kir4.1 gene (KCNJ10) that result in seizures, sensorineural deafness, ataxia, mental retardation, and electrolyte imbalance (SeSAME)/epilepsy, ataxia, sensorineural deafness, and renal tubulopathy (EAST) syndrome, a complex disorder that includes salt wasting and hypokalemic alkalosis. Here, we investigated the role of the Kir5.1 subunit in mice with a targeted disruption of the Kir5.1 gene (Kcnj16). The Kir5.1−/− mice displayed hypokalemic, hyperchloremic metabolic acidosis with hypercalciuria. The short-term responses to hydrochlorothiazide, an inhibitor of ion transport in the distal convoluted tubule (DCT), were also exaggerated, indicating excessive renal Na+ absorption in this segment. Furthermore, chronic treatment with hydrochlorothiazide normalized urinary excretion of Na+ and Ca2+, and abolished acidosis in Kir5.1−/− mice. Finally, in contrast to WT mice, electrophysiological recording of K+ channels in the DCT basolateral membrane of Kir5.1−/− mice revealed that, even though Kir5.1 is absent, there is an increased K+ conductance caused by the decreased pH sensitivity of the remaining homomeric Kir4.1 channels. In conclusion, disruption of Kcnj16 induces a severe renal phenotype that, apart from hypokalemia, is the opposite of the phenotype seen in SeSAME/EAST syndrome. These results highlight the important role that Kir5.1 plays as a pH-sensitive regulator of salt transport in the DCT, and the implication of these results for the correct genetic diagnosis of renal tubulopathies is discussed.
    Print ISSN: 0027-8424
    Electronic ISSN: 1091-6490
    Topics: Biology , Medicine , Natural Sciences in General
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  • 3
    Publication Date: 2017-11-17
    Description: Griffith et al . do not question the quality of our analysis, but they question our results with respect to the definition of forest we employed. In our response, we explain why the differences we report result from a difference of technique and not of definition, and how anyone can adapt—as we did—our data set to any forest definition and tree cover threshold of interest.
    Keywords: Ecology, Online Only
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 4
    Publication Date: 2017-10-27
    Description: Schepaschenko et al . question our findings, claiming that we did not refer to all existing maps and that we did not account for all sources of uncertainty. In our response, we detail our selection criteria for reference maps, which clarify why the work of Schepaschenko et al . was not used, and we explain why our uncertainty assessment is complete and how it was misunderstood by Schepaschenko et al .
    Keywords: Ecology, Online Only
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 5
    Publication Date: 2017-11-10
    Description: De la Cruz et al . question the reliability of our results, claiming that we do not refer to the most appropriate spatial extent of drylands. In our response, we explain why we chose an existing and internationally recognized delineation of drylands among several options, and why our findings are due to a difference of remote sensing technique and not to the definition of drylands we have selected.
    Keywords: Ecology, Online Only
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 6
    Publication Date: 2013-02-16
    Description: Ethyl glucuronide (EtG) determination is increasingly used in clinical and forensic toxicology to document ethanol consumption. The enzymes involved in EtG production, as well as potential interactions with common drugs of abuse, have not been extensively studied. Activities of human liver (HLM), kidney (HKM), and intestinal (HIM) microsomes, as well as of 12 major human recombinant UDP-glucuronosyltransferases (UGTs), toward ethanol (50 and 500 mM) were evaluated in vitro using liquid chromatography-tandem mass spectrometry. Enzyme kinetic parameters were determined for pooled microsomes and recombinant UGTs with significant activity. Individual contributions of UGTs were estimated using the relative activity factor approach, proposed for scaling activities obtained with cDNA-expressed enzymes to HLM. Interaction of morphine, codeine, lorazepam, oxazepam, nicotine, cotinine, cannabinol, and cannabidiol (5, 10, 15 mg/l) with ethanol (1.15, 4.6, 11.5 g/l; i.e., 25, 100, 250 mM) glucuronidation was assessed using pooled HLM. Ethanol glucuronidation intrinsic clearance (Cl int ) was 4 and 12.7 times higher for HLM than for HKM and HIM, respectively. All recombinant UGTs, except UGT1A1, 1A6, and 1A10, produced EtG in detectable amounts. UGT1A9 and 2B7 were the most active enzymes, each accounting for 17 and 33% of HLM Cl int , respectively. Only cannabinol and cannabidiol significantly affected ethanol glucuronidation. Cannabinol increased ethanol glucuronidation in a concentration-dependent manner, whereas cannabidiol significantly inhibited EtG formation in a noncompetitive manner (IC 50 = 1.17 mg/l; inhibition constant ( K i ) = 3.1 mg/l). UGT1A9 and 2B7 are the main enzymes involved in ethanol glucuronidation. In addition, our results suggest that cannabinol and cannabidiol could significantly alter ethanol glucuronidation.
    Print ISSN: 0090-9556
    Electronic ISSN: 1521-009X
    Topics: Chemistry and Pharmacology , Medicine
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  • 7
    Publication Date: 2014-03-07
    Description: Background BRAF was identified as an oncogene in skin melanoma in 2002 and since 2011has been a therapeutic target in the treatment of metastatic melanoma. The role of the BRAF mutation in tumour initiation and disease course remains to be elucidated. Objectives The main objective of our study was to determine whether there is a relation between BRAF status and overall survival in patients with a melanoma and a positive sentinel lymph node. We also sought for an association between BRAF status and the clinicopathological features of the melanoma. Finally, we looked for a potential heterogeneity of BRAF status in primary and metastatic tumours. Methods All patients (n=72) treated for melanoma and a positive sentinel lymph node in the University Hospital of Clermont-Ferrand, France, between January 2000 and 2010 were enrolled in the study. We investigated BRAF status in primary melanoma and lymph node metastatic tissue in our molecular pathology laboratory and collected the clinical and survival data. Results Of the 72 patients, 32 had at least one BRAF mutation. There was a statistically significant difference in overall survival between BRAF mutant and wild-type populations. The only clinical feature related to BRAF status was metastatic burden. Of the 25 patients in whom we obtained the status in both locations, 5 had a discordant result. Conclusion The BRAF mutation is an indicator of poor prognosis in stage III melanoma patients with positive sentinel lymph node. BRAF status could be used in the staging of this population. BRAF has a role not only in cellular immortalization but also in metastatic spread. This article is protected by copyright. All rights reserved.
    Print ISSN: 0007-0963
    Electronic ISSN: 1365-2133
    Topics: Medicine
    Published by Wiley-Blackwell
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  • 8
    Publication Date: 2016-04-21
    Description: Papillomatous pedunculated sebaceous naevus (PPSN) has been described as a subtype of sebaceous naevus (SN), typically affecting the scalp and face. In contrast with Schimmelpenning syndrome, no cerebral, ocular or skeletal anomalies have hitherto been reported. We report two unrelated foetuses with PPSN, one with large pink exophytic tumours, the other with minor features but close microscopic findings. We performed whole exome sequencing in affected skin tissue from foetus 1 which identified a postzygotic de novo FGFR2 c.1144T〉C (p.Cys382Arg) mutation in 34.6 % of reads which was absent in blood from his parents. Targeted deep sequencing of FGFR2 confirmed its mosaic status in additional affected skin from foetus 1, and identified the same substitution in 26% of reads in affected skin from foetus 2. FGFR2 p.Cys382Arg is a known somatic driver mutation in human cancer, previously reported to result in activation of RAS signalling. A similar paralogous missense mutation in the transmembrane domain of FGFR3 (p.Gly380Arg) has been reported in keratinocytic epidermal nevi (KEN). Our findings define a distinct clinical and molecular subgroup of SN, beside HRAS or KRAS -related SN, and expand the spectrum of mosaic skin conditions associated with receptor tyrosine kinase mutations. This article is protected by copyright. All rights reserved.
    Print ISSN: 0007-0963
    Electronic ISSN: 1365-2133
    Topics: Medicine
    Published by Wiley-Blackwell
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  • 9
    Publication Date: 2017-05-12
    Description: Dryland biomes cover two-fifths of Earth’s land surface, but their forest area is poorly known. Here, we report an estimate of global forest extent in dryland biomes, based on analyzing more than 210,000 0.5-hectare sample plots through a photo-interpretation approach using large databases of satellite imagery at (i) very high spatial resolution and (ii) very high temporal resolution, which are available through the Google Earth platform. We show that in 2015, 1327 million hectares of drylands had more than 10% tree-cover, and 1079 million hectares comprised forest. Our estimate is 40 to 47% higher than previous estimates, corresponding to 467 million hectares of forest that have never been reported before. This increases current estimates of global forest cover by at least 9%.
    Keywords: Ecology
    Print ISSN: 0036-8075
    Electronic ISSN: 1095-9203
    Topics: Biology , Chemistry and Pharmacology , Geosciences , Computer Science , Medicine , Natural Sciences in General , Physics
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  • 10
    Publication Date: 2016-08-27
    Description: Tropical forests in Africa store large amounts of carbon and there is an urgent need for accurate methods to estimate this important carbon stock. One method to achieve this is by allometric equations but in many forest ecosystems in Africa these have not been developed. This study combined biomass data of 896 trees from five tropical countries in Africa and eight different sources to develop mixed-species regression equations for estimation of total biomass and height in Dry, Moist and Wet forest types. For estimation of total biomass, allometric equations combining diameter, height and wood density provided the best estimators in the three forest types. Because adding wood density to diameter improved height estimation, we recommend using allometric equations that combine diameter and wood density for height estimations in mixed and diverse tropical forests. Comparing ecosystem-specific (Dry, Moist and Wet) allometric equations to general allometric equations developed with combined data, and also to pan-tropical equations, showed that ecosystem-specific equations provided better estimators. The results highlight the importance of considering wood density in tree allometry for biomass as well as for tree height estimations. Although general allometric equations can be useful, this study recommends when they are available, the use of existing site-specific or ecosystem-specific allometric equations which provide better estimates.
    Print ISSN: 0015-752X
    Electronic ISSN: 1464-3626
    Topics: Agriculture, Forestry, Horticulture, Fishery, Domestic Science, Nutrition
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