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  • 1
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 82 (1960), S. 3727-3732 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 2
    ISSN: 1432-0983
    Keywords: Euglena gracilis ; Chloroplast genome ; psb C ; Intron ORF
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We retrieved a 1.6 kbp intron separating two exons of the psb C gene which codes for the 44 kDa reaction center protein of photosystem II. This intron is 3 to 4 times the size of all previously sequenced Euglena gracilis chloroplast introns. It contains an open reading frame of 458 codons potentially coding for a basic protein of 54 kDa of yet unknown function. The intron boundaries follow consensus sequences established for chloroplast introns related to class II and nuclear pre-mRNA introns. Its 3′-terminal segment has structural features similar to class II mitochondrial introns with an invariant base A as possible branch point for lariat formation.
    Type of Medium: Electronic Resource
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  • 3
    ISSN: 1432-0983
    Keywords: Chloroplast DNA ; Euglena gracilis ; Origin of DNA replication
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We sequenced a Bg1II-HindIII DNA fragment of the Euglena gracilis chloroplast genome which most likely carries the single origin of DNA replication according to recent electronmicroscopic mapping studies (Koller and Delius 1982a; Ravel-Chapuis et al. 1982). This DNA fragment contains a polymorphic region (Schlunegger et al. 1983) which is composed, as will be shown, of multiple tandem repeats (54 bp, 87% A+T). Furthermore we located on this DNA fragment a short inverted repeat element (96 positions) observed in the electronmicroscopic studies (Koller and Delius 1982b). Between the borders of the polymorphic region and the nearby inverted repeat (distance of 179 positions) we retrieved an exact copy of parts of the rDNA leader (105 positions) including 49 positions of the chloroplast trnW gene. A computer search for bacterial type Ori-regions did not reveal any significant sequence homology. However, the polymorphic region and its immediate vicinity have the capacity to form multiple stem and loop structures which may be involved in DNA replication initiation.
    Type of Medium: Electronic Resource
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  • 4
    ISSN: 1432-0983
    Keywords: Chloroplast DNA ; Euglena gracilis ; rrn operons ; DNA deletion/insertion
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary We have completed the analysis of a DNA segment of the chloroplast genome of Euglena gracilis Klebs, Z-strain, which links the 3′ end of the extra 16S rRNA gene with the 5′ end of the 16S rRNA gene of the rrn operon A. This region is a mosaic of several structural elements and contains an intact rrn interoperon spacer of 1,080 bp, an extra 5S rRNA gene, an open reading frame for 406 codons (ORF 406) which is flanked by short inverted repeats and a short direct repeat originating from the rrn interoperon spacer. It seems that a once complete rrn operon underwent in the past an insertion/deletion event leaving intact the 16S and 5S rRNA but totally excising the 16S-23S intergenic spacer and the 23S rRNA gene. Instead a protein coding gene of yet unknown function was inserted along with other structural elements.
    Type of Medium: Electronic Resource
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  • 5
    ISSN: 1573-5028
    Keywords: soybean seedlings ; eEF-1α ; tef genes ; cDNA ; genomic DNA ; dark/light transcription ; intron
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract A cDNA and a genomic DNA library from soybean (Glycine max L.) were used to identify and sequence two genes coding for the α-subunit of the translation elongation factor eEF-1. Within the coding part, the two genes (tefS1 andtefS2) diverge in 80 wobble positions thus yielding an identical protein composed of 447 amino acids. The soybean protein has about 95% similarity with eEF-1α proteins ofArabidopsis thaliana and tomato. Both genesS1 andS2 contain, within the coding part at a site seemingly unique to higher plants, a single short intron of 86 and 116 nucleotides, respectively. The untranslated leader part of both genes is interrupted by a large intron (partially sequenced). GenesS1 andS2 are transcribed in young leaves. cDNA and gene-specific oligonucleotide probes interact with a unique transcript of close to 1.9 kb. Northern hybridization studies using RNAs from dark- and light-grown seedlings show that light sharply increases the level of stable transcripts (1.9 kb). A peak value is measured after about 3 h of illumination, afterwards the transcript concentration drops to about 10% of the peak value. GenesS1 andS2 follow a similar transcription pattern in developing seedling leaves, which is distinct from that of therbcS genes measured in parallel experiments. According to northern results,S1 transcripts are more abundant in leaves at all measured stages of development thanS2 transcripts.
    Type of Medium: Electronic Resource
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  • 6
    ISSN: 1573-5028
    Keywords: gmsti gene ; heat stress ; tetratricopeptide ; soybean ; TRP motif
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract In close vicinity of two fus nuclear genes (chloroplast-specific translation elongation factor cEF-G) of soybean (Glycine max) we localized a split nuclear gene coding for a protein with tetratricopeptide repeats (TPR). A full-length cDNA was sequenced (1871 nucleotides). It encodes a protein (569 amino acids) with high sequence identity to the yeast STI1 stress-inducible and the human transformation-sensitive IEF SSP 3521 protein which both carry TPR elements. The soybean gene is heat-inducible. This is the first evidence for the existence of plant genes coding for proteins which belong to the TPR family. We call the gene gmsti and the protein GMSTI in analogy to the yeast counterpart.
    Type of Medium: Electronic Resource
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  • 7
    ISSN: 1573-5028
    Keywords: chloroplast ; Euglena gracilis ; ORF406 ; rRNA-mRNA co-transcript ; supplementary 16 S rRNA
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Abstract The chloroplast genome of Euglena gracilis contains a supplementary gene for a 16 S rRNA (s16 S rrn gene), which is not part of a complete rrn operon. An open reading frame (ORF406) is located downstream of the s16 S rrn gene. Chloroplast RNA was hybridized with cloned DNA fragments of this region and the hybrids were analysed by electron microscopy and S1-nuclease protection experiments. The s16 S rrn gene and the ORF406 are transcribed as one continuous 3.6 kb long RNA, which starts just upstream of the 5′-end of the s16 S rrn gene. The 3′-end occurs at multiple sites within a region of 700 bases downstream of the ORF. Northern blot analysis shows that the abundance of the transcript is comparable with that of other chloroplast mRNAs.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    Springer
    Molecular genetics and genomics 163 (1978), S. 1-6 
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary E. gracilis chloroplast DNA Bam fragments E and D, coding for rRNA were cloned separately using the plasmid pBR 322 as vector and E. coli as host. The newly constructed recombinant plasmids EgcKS 8 and EgcKS 11 (containing the Bam HI fragments E and D respectively) were analysed and characterized by gel electrophoresis, electronmicroscopy and analytical ultracentrifugation.
    Type of Medium: Electronic Resource
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  • 9
    ISSN: 1617-4623
    Source: Springer Online Journal Archives 1860-2000
    Topics: Biology
    Notes: Summary Chloroplast DNA was isolated in preparative amounts from purified chloroplasts from soybean (Glycine max.). This DNA upon digestion with the restriction enzymes SalI, PstI, and SmaI yields 5, 9, and 12 fragments, respectively. The total genome size is between 150–152 kilobase pairs. A complete circular SalI-PstI-SmaI restriction site map has been constructed. The circular genome contains two inverted repeats of about 21–23 kbp separated by a single copy region of about 24 kbp. The rDNA region is part of the inverted repeat. The genes for the large subunit of the ribulose 1,5-bisphosphate carboxylase is localized about five kbp away from the gene coding for the 32 KD protein of the photosystem II reaction center. The close proximity of these two genes seems to be characteristic for chloroplast genomes of the legume family.
    Type of Medium: Electronic Resource
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