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  • 1
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    PANGAEA
    In:  Supplement to: Häfker, N Sören; Teschke, Mathias; Last, Kim; Pond, David W; Hüppe, Lukas; Meyer, Bettina (2018): Calanus finmarchicus seasonal cycle and diapause in relation to gene expression, physiology, and endogenous clocks. Limnology and Oceanography, https://doi.org/10.1002/lno.11011
    Publication Date: 2023-03-16
    Description: The copepod Calanus finmarchicus plays a crucial role in the north Atlantic food web. Its seasonal life cycle involves reproduction and development in surface waters before overwintering in diapause at depth. Although diapause has been studied for more than a century, the factors responsible for the initiation and termination of it are still unclear. Endogenous clocks have been identified as potent tools for photoperiod measurement and seasonal rhythmicity in many terrestrial species, but knowledge of these remains scarce in the marine realm. Focusing on the dominant CV copepodid stage, we sampled a population of C. finmarchicus from a Scottish sea loch to characterize population dynamics, several physiological parameters, and diel and seasonal expression rhythms of 35 genes representing different metabolic pathways, including the circadian clock machinery. This generated a detailed overview of the seasonal cycle of C. finmarchicus including the most extensive field dataset on circadian clock gene expression in a marine species to date. Gene expression patterns revealed distinct gene clusters upregulated at different phases of the copepod's seasonal cycle. While diel clock cycling was restricted to the active spring/summer phase, many clock genes exhibited the highest expression during diapause. Our results provide new insights into diapause on physiological and genetic levels. We suggest that photoperiod, in interaction with internal and external factors (lipid content, temperature, food availability) and the endogenous clock mechanism, plays an important role in the timing of diapause in C. finmarchicus.
    Keywords: AWI_BioOce; Biological Oceanography @ AWI
    Type: Dataset
    Format: application/vnd.openxmlformats-officedocument.spreadsheetml.sheet, 15.5 kBytes
    Location Call Number Limitation Availability
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  • 2
    Publication Date: 2023-01-13
    Keywords: Abundance per volume; Date/Time of event; Depth, bottom/max; Depth, top/min; DEPTH, water; Event label; Latitude of event; Longitude of event; Net; NET; Scotia Sea, South Georgia; SG_T1-T9_2004; SG_T1-T9_2005; Taxon/taxa; Type; Uniform resource locator/link to reference
    Type: Dataset
    Format: text/tab-separated-values, 48 data points
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  • 3
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    PANGAEA
    In:  Supplement to: Häfker, N Sören; Meyer, Bettina; Last, Kim; Pond, David W; Hüppe, Lukas; Teschke, Mathias (2017): Circadian clock involvement in zooplankton diel vertical migration. Current Biology, 27(14), 2194-2201.e3, https://doi.org/10.1016/j.cub.2017.06.025
    Publication Date: 2023-01-13
    Description: Genetic clocks are a ubiquitous ancient and adaptive mechanism enabling organisms to anticipate environmental rhythms and to regulate behavioral, physiological and behavioral processes accordingly. Whilst terrestrial circadian clocks are well studied and understood, knowledge about the clock systems in marine organisms is still limited. This is particularly true for abundant species displaying large-scale rhythms like diel vertical migration (DVM) that contribute significantly to shaping their respective ecosystems. Here, we describe endogenous and highly rhythmic patterns in the biology of the ecologically important and highly abundant planktic copepod Calanus finmarchicus. This species shows circadian rhythms of DVM, metabolism, and most core circadian clock genes (clock, period1, period2, timeless, cryptochrome2, clockwork orange) in the laboratory. In the field, copepods from shallow water (0-50m) have more robust rhythmic clock gene oscillations than those caught in deeper water (140-50m). Further, peak expressions of clock genes generally occurred at either sunset or sunrise coinciding with peak migration times. Providing one of the first field investigations of clock gene rhythmicity in a marine species this study further couples clock genes measurements with laboratory and field data on DVM. While the mechanistic connection remains elusive, our results imply a high degree of causality between clock gene expression and one of the planet's largest daily migration of biomass. This could increase zooplankton fitness by optimizing the temporal trade-off between feeding and predator avoidance.
    Type: Dataset
    Format: application/zip, 201.7 kBytes
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  • 4
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    In:  EPIC3Scientific Evaluation of the Alfred Wegener Institute Helmholtz Centre for Polar- and Marine Research and associated large scale infrastructure (RV Polarstern, RV Heincke, Neumayer Station III), Alfred-Wegener-Institut, Bremerhaven, Germany, 2018-03-19-2018-03-22Bremerhaven, Germany
    Publication Date: 2022-09-29
    Repository Name: EPIC Alfred Wegener Institut
    Type: Conference , notRev
    Format: application/pdf
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  • 5
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    CELL PRESS
    In:  EPIC3Current Biology, CELL PRESS, 27(14), pp. 2194-2201, ISSN: 0960-9822
    Publication Date: 2024-05-13
    Description: Biological clocks are a ubiquitous ancient and adaptive mechanism enabling organisms to anticipate environmental cycles and to regulate behavioral and physiological processes accordingly [1]. Although terrestrial circadian clocks are well understood, knowledge of clocks in marine organisms is still very limited [2–5]. This is particularly true for abundant species displaying large-scale rhythms like diel vertical migration (DVM) that contribute significantly to shaping their respective ecosystems [6]. Here we describe exogenous cycles and endogenous rhythms associated with DVM of the ecologically important and highly abundant planktic copepod Calanus finmarchicus. In the laboratory, C. finmarchicus shows circadian rhythms of DVM, metabolism, and most core circadian clock genes (clock, period1, period2, timeless, cryptochrome2, and clockwork orange). Most of these genes also cycle in animals assessed in the wild, though expression is less rhythmic at depth (50–140 m) relative to shallow-caught animals (0–50 m). Further, peak expressions of clock genes generally occurred at either sunset or sunrise, coinciding with peak migration times. Including one of the first field investigations of clock genes in a marine species [5, 7], this study couples clock gene measurements with laboratory and field data on DVM. While the mechanistic connection remains elusive, our results imply a high degree of causality between clock gene expression and one of the planet’s largest daily migrations of biomass. We thus suggest that circadian clocks increase zooplankton fitness by optimizing the temporal trade-off between feeding and predator avoidance, especially when environmental drivers are weak or absent [8].
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
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  • 6
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    AMER SOC LIMNOLOGY OCEANOGRAPHY
    In:  EPIC3Limnology and Oceanography, AMER SOC LIMNOLOGY OCEANOGRAPHY, ISSN: 0024-3590
    Publication Date: 2024-05-13
    Description: The copepod Calanus finmarchicus plays a crucial role in the north Atlantic food web. Its seasonal life cycle involves reproduction and development in surface waters before overwintering in diapause at depth. Although diapause has been studied for more than a century, the factors responsible for the initiation and termination of it are still unclear. Endogenous clocks have been identified as potent tools for photoperiod measurement and seasonal rhythmicity in many terrestrial species, but knowledge of these remains scarce in the marine realm. Focusing on the dominant CV copepodid stage, we sampled a population of C. finmarchicus from a Scottish sea loch to characterize population dynamics, several physiological parameters, and diel and seasonal expression rhythms of 35 genes representing different metabolic pathways, including the circadian clock machinery. This generated a detailed overview of the seasonal cycle of C. finmarchicus including the most extensive field dataset on circadian clock gene expression in a marine species to date. Gene expression patterns revealed distinct gene clusters upregulated at different phases of the copepod’s seasonal cycle. While diel clock cycling was restricted to the active spring/summer phase, many clock genes exhibited the highest expression during diapause. Our results provide new insights into diapause on physiological and genetic levels. We suggest that photoperiod, in interaction with internal and external factors (lipid content, temperature, food availability) and the endogenous clock mechanism, plays an important role in the timing of diapause in C. finmarchicus.
    Repository Name: EPIC Alfred Wegener Institut
    Type: Article , isiRev
    Format: application/pdf
    Location Call Number Limitation Availability
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