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  • 1
    Publication Date: 2023-02-08
    Description: One of the aims of the United Nations (UN) negotiations on the conservation and sustainable use of marine biodiversity in areas beyond national jurisdiction (ABNJ) is to develop a legal process for the establishment of area-based management tools, including marine protected areas, in ABNJ. Here we use a conservation planning algorithm to integrate 55 global data layers on ABNJ species diversity, habitat heterogeneity, benthic features, productivity, and fishing as a means for highlighting priority regions in ABNJ to be considered for spatial protection. We also include information on forecasted species distributions under climate change. We found that parameterizing the planning algorithm to protect at least 30% of these key ABNJ conservation features, while avoiding areas of high fishing effort, yielded a solution that highlights 52,545,634 km2 (23.7%) of ABNJ as high priority regions for protection. Instructing the planning model to avoid ABNJ areas with high fishing effort resulted in relatively minor shifts in the planning solution, when compared to a separate model that did not consider fishing effort. Integrating information on climate change had a similarly minor influence on the planning solution, suggesting that climate-informed ABNJ protected areas may be able to protect biodiversity now and in the future. This globally standardized, data-driven process for identifying priority ABNJ regions for protection serves as a valuable complement to other expert-driven processes underway to highlight ecologically or biologically significant ABNJ regions. Both the outputs and methods exhibited in this analysis can additively inform UN decision-making concerning establishment of ABNJ protected areas.
    Type: Article , PeerReviewed
    Format: text
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  • 2
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    Massachusetts Institute of Technology and Woods Hole Oceanographic Institution
    Publication Date: 2022-05-25
    Description: Submitted in partial fulfillment of the requirements for the degree of Master of Science at the Massachusetts Institute of Technology and the Woods Hole Oceanographic Institution June 2010
    Description: In this thesis, I expand a spatially-explicit bioeconomic fishery model to include the negative effects of fishing effort on habitat quality. I consider two forms of effort driven habitat damage: First, fishing effort may directly increase individual mortality rates. Second, fishing effort may increase competition between individuals, thereby increasing density-dependent mortality rates. I then optimize effort distribution and fish stock density according to three management cases: (1) a sole owner, with jurisdiction over the entire fishery, who seeks to maximize profit by optimizing effort distribution; (2) a manager with limited control of effort and stock distributions, who seeks to maximize tax revenue by setting the length of a single, central reserve and a uniform tax per unit effort outside it; and (3) a manager with even more limited enforcement power, who can only set a tax per unit effort everywhere in the habitat space. I demonstrate that the economic efficiency of reserves depends upon model parameterization. In particular, reserves are most likely to increase profit (or tax revenue) when density-dependent fish mortality rates are affected. Interestingly, for large habitats that are sufficiently sensitive to density-dependent fish mortality effects, reserve networks (alternating fished and unfished areas of fixed periodicity) emerge. These results suggest that spatial forms of management which include marine reserves may enable significant economic gains over nonspatial management strategies, in addition to the well-established conservation benefits provided by closed areas.
    Description: MIT Linden Fellowship, funding from the WHOI Academic Programs Office, and an NSF Graduate Research Fellowship.
    Keywords: Environmental economics ; Marine parks and reserves
    Repository Name: Woods Hole Open Access Server
    Type: Thesis
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  • 3
    Publication Date: 2022-05-25
    Description: Author Posting. © Ecological Society of America, 2013. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecological Applications 23 (2013): 959–971, doi:10.1890/12-0447.1.
    Description: The biological benefits of marine reserves have garnered favor in the conservation community, but “no-take” reserve implementation is complicated by the economic interests of fishery stakeholders. There are now a number of studies examining the conditions under which marine reserves can provide both economic and ecological benefits. A potentially important reality of fishing that these studies overlook is that fishing can damage the habitat of the target stock. Here, we construct an equilibrium bioeconomic model that incorporates this habitat damage and show that the designation of marine reserves, coupled with the implementation of a tax on fishing effort, becomes both biologically and economically favorable as habitat sensitivity increases. We also study the effects of varied degrees of spatial control on fisheries management. Together, our results provide further evidence for the potential monetary and biological value of spatial management, and the possibility of a mutually beneficial resolution to the fisherman–conservationist marine reserve designation dilemma.
    Description: M. G. Neubert acknowledges the support of the National Science Foundation (DMS-0532378, OCE-1031256) and a Thomas B. Wheeler Award for Ocean Science and Society. H. V. Moeller acknowledges support from a National Science Foundation Graduate Research Fellowship. This research is based in part on work supported by Award No. USA 00002 made by King Abdullah University of Science and Technology (KAUST).
    Keywords: Bioeconomics ; Destructive fishing practices ; Fisheries ; Habitat damage ; Marine protected areas ; Marine reserves ; Optimal control ; Optimal harvesting ; Spatial management
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 4
    Publication Date: 2022-05-25
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Natural Resource Modeling 28 (2015): 244-255, doi:10.1111/nrm.12066.
    Description: Bioeconomic analyses of spatial fishery models have established that marine reserves can be economically optimal (i.e., maximize sustainable profit) when there is some type of spatial heterogeneity in the system. Analyses of spatially continuous models and models with more than two discrete patches have also demonstrated that marine reserves can be economically optimal even when the system is spatially homogeneous. In this note we analyze a spatially homogeneous two-patch model and show that marine reserves can be economically optimal in this case as well. The model we study includes the possibility that fishing can damage habitat. In this model, marine reserves are necessary to maximize sustainable profit when dispersal between the patches is sufficiently high and habitat is especially vulnerable to damage.
    Description: Graduate Research Fellowship and a Postdoctoral Research Fellowship in Biology Grant Number: DBI-1401332; US National Science Foundation Grant Numbers: OCE-1031256, DEB-1257545, DEB-1145017
    Description: 2016-06-23
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 5
    Publication Date: 2022-05-25
    Description: © The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Marine Ecology Progress Series 492 (2013): 253-272, doi:10.3354/meps10534.
    Description: An inverse food-web model for the western Antarctic Peninsula (WAP) pelagic food web was constrained with data from Palmer Long Term Ecological Research (PAL-LTER) project annual austral summer sampling cruises. Model solutions were generated for 2 regions with Adélie penguin Pygoscelis adeliae colonies presenting different population trends (a northern and a southern colony) for a 12 yr period (1995-2006). Counter to the standard paradigm, comparisons of carbon flow through bacteria, microzooplankton, and krill showed that the diatom-krill-top predator food chain is not the dominant pathway for organic carbon exchanges. The food web is more complex, including significant contributions by microzooplankton and the microbial loop. Using both inverse model results and network indices, it appears that in the northern WAP the food web is dominated by the microbial food web, with a temporal trend toward its increasing importance. The dominant pathway for the southern WAP food web varies from year to year, with no detectable temporal trend toward dominance of microzooplankton versus krill. In addition, sensitivity analyses indicated that the northern colony of Adélie penguins, whose population size has been declining over the past 35 yr, appears to have sufficient krill during summer to sustain its basic metabolic needs and rear chicks, suggesting the importance of other processes in regulating the Adélie population decline.
    Description: We acknowledge support from the National Science Foundation, Office of Polar Programs, Award 0823101 (Antarctic Organisms and Ecosystems Program) to Palmer LTER.
    Keywords: Inverse model ; Food web ; Antarctica ; Microzooplankton ; Krill ; Ecosystem state change ; Climate change
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 6
    Publication Date: 2023-02-28
    Description: © The Author(s), 2022. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Paight, C., Johnson, M., Lasek‐Nesselquist, E., & Moeller, H. Cascading effects of prey identity on gene expression in a kleptoplastidic ciliate. Journal of Eukaryotic Microbiology, 70(1), (2022): e12940, https://doi.org/10.1111/jeu.12940.
    Description: Kleptoplastidic, or chloroplast stealing, lineages transiently retain functional photosynthetic machinery from algal prey. This machinery, and its photosynthetic outputs, must be integrated into the host's metabolism, but the details of this integration are poorly understood. Here, we study this metabolic integration in the ciliate Mesodinium chamaeleon, a coastal marine species capable of retaining chloroplasts from at least six distinct genera of cryptophyte algae. To assess the effects of feeding history on ciliate physiology and gene expression, we acclimated M. chamaeleon to four different types of prey and contrasted well-fed and starved treatments. Consistent with previous physiological work on the ciliate, we found that starved ciliates had lower chlorophyll content, photosynthetic rates, and growth rates than their well-fed counterparts. However, ciliate gene expression mirrored prey phylogenetic relationships rather than physiological status, suggesting that, even as M. chamaeleon cells were starved of prey, their overarching regulatory systems remained tuned to the prey type to which they had been acclimated. Collectively, our results indicate a surprising degree of prey-specific host transcriptional adjustments, implying varied integration of prey metabolic potential into many aspects of ciliate physiology.
    Description: This work was supported by a grant from the Simons Foundation (Award # 689265 to HVM). Research was sponsored by the U.S. Army Research Office and accomplished under contract W911NF-19-D-0001 for the Institute for Collaborative Biotechnologies.
    Keywords: Acquired metabolism ; Cryptophyte ; Mesodinium chamaeleon ; Photophysiology ; Transcriptomics
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 7
    Publication Date: 2022-05-26
    Description: Author Posting. © Ecological Society of America, 2019. This article is posted here by permission of Ecological Society of America for personal use, not for redistribution. The definitive version was published in Ecology, (2019): e02874, doi: 10.1002/ecy.2874.
    Description: Resource competition theory predicts that when two species compete for a single, finite resource, the better competitor should exclude the other. However, in some cases, weaker competitors can persist through intraguild predation, that is, by eating their stronger competitor. Mixotrophs, species that meet their carbon demand by combining photosynthesis and phagotrophic heterotrophy, may function as intraguild predators when they consume the phototrophs with which they compete for light. Thus, theory predicts that mixotrophy may allow for coexistence of two species on a single limiting resource. We tested this prediction by developing a new mathematical model for a unicellular mixotroph and phytoplankter that compete for light, and comparing the model's predictions with a laboratory experimental system. We find that, like other intraguild predators, mixotrophs can persist when an ecosystem is sufficiently productive (i.e., the supply of the limiting resource, light, is relatively high), or when species interactions are strong (i.e., attack rates and conversion efficiencies are high). Both our mathematical and laboratory models show that, depending upon the environment and species traits, a variety of equilibrium outcomes, ranging from competitive exclusion to coexistence, are possible.
    Description: HVM and MGN designed the model. HVM and MDJ designed the experimental test system. HVM performed the model analysis, conducted the experiments, and analyzed the data. All authors wrote the paper. We thank Susanne Wilken for generously providing axenic CCMP 2951 and 1393 cultures for our use. R. Germain, S. Louca, G. Owens, N. Sharp, P. Thompson, and J. Yoder provided valuable feedback on figure design. We also thank J. Bronstein, S. Diehl, J. Huisman, C. Klausmeier, and four anonymous reviewers for comments on earlier versions of this manuscript. HVM was supported by a United States National Science Foundation Postdoctoral Research Fellowship in Biology (Grant DBI‐1401332) and a University of British Columbia Biodiversity Research Centre Postdoctoral Fellowship. This material is based upon work supported by the National Science Foundation under Grants OCE‐1655686 and OCE‐1436169, by a grant from the Simons Foundation/SFARI (561126, HMS), and by the Woods Hole Oceanographic Institution's Investment in Science Program. Research was also sponsored by the U.S. Army Research Office and was accomplished under Cooperative Agreement Number W911NF‐19‐2‐0026 for the Institute for Collaborative Biotechnologies.
    Keywords: community ecology ; competition ; Micromonas commoda ; mixotrophy ; model‐data comparison ; Ochromonas
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 8
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    Biological and Chemical Oceanography Data Management Office (BCO-DMO). Contact: bco-dmo-data@whoi.edu
    Publication Date: 2022-05-27
    Description: Dataset: Photosynthesis-Irradiance Curves
    Description: This dataset includes a quantification of photosynthetic capacity of cells using a laser induction of chlorophyll autofluorescence. For a complete list of measurements, refer to the full dataset description in the supplemental file 'Dataset_description.pdf'. The most current version of this dataset is available at: https://www.bco-dmo.org/dataset/853945
    Description: NSF Division of Ocean Sciences (NSF OCE) OCE-1851194
    Repository Name: Woods Hole Open Access Server
    Type: Dataset
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  • 9
    Publication Date: 2022-05-26
    Description: Author Posting. © The Author(s), 2015. This is the author's version of the work. It is posted here by permission of John Wiley & Sons for personal use, not for redistribution. The definitive version was published in Ecology Letters 19 (2016): 393-402, doi:10.1111/ele.12572.
    Description: In marine ecosystems, acquired phototrophs|organisms that obtain their photo- synthetic ability by hosting endosymbionts or stealing plastids from their prey|are omnipresent. Such taxa function as intraguild predators yet depend on their prey to periodically obtain chloroplasts. We present new theory for the effects of acquired phototrophy on community dynamics by analyzing a mathematical model of this predator-prey interaction and experimentally verifying its predictions with a lab- oratory model system. We show that acquired phototrophy stabilizes coexistence, but that the nature of this coexistence exhibits a `paradox of enrichment:' as light increases, the coexistence between the acquired phototroph and its prey transitions from a stable equilibrium to boom-bust cycles whose amplitude increases with light availability. In contrast, heterotrophs and mixotrophic acquired phototrophs (that obtain 〈30% of their carbon from photosynthesis) do not exhibit such cycles. This prediction matches eld observations, in which only strict (〉95% of carbon from photosynthesis) acquired phototrophs form blooms.
    Description: HVM is supported by a United States National Science Foundation Postdoctoral Research Fellowship in Biology (Grant No. DBI-1401332). EP is supported by the Academy of Finland through research grant 276268. MDJ acknowledges NSF Grant No. IOS-1354773. MGN acknowledges support provided by the Independent Research and Development Program at the Woods Hole Oceanographic Institution.
    Description: 2017-02-01
    Keywords: Acquired metabolic potential ; Community ecology ; Intraguild predation ; Kleptoplastidy ; Mesodinium rubrum ; Mixotrophy
    Repository Name: Woods Hole Open Access Server
    Type: Preprint
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  • 10
    Publication Date: 2022-05-26
    Description: © The Author(s), 2016. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Ecology and Evolution 6 (2016): 5416–5430, doi:10.1002/ece3.2299.
    Description: Theory predicts that neighboring communities can shape one another's composition and function, for example, through the exchange of member species. However, empirical tests of the directionality and strength of these effects are rare. We determined the effects of neighboring communities on one another through experimental manipulation of a plant-fungal model system. We first established distinct ectomycorrhizal fungal communities on Douglas-fir seedlings that were initially grown in three soil environments. We then transplanted seedlings and mycorrhizal communities in a fully factorial experiment designed to quantify the direction and strength of neighbor effects by focusing on changes in fungal community species composition and implications for seedling growth (a proxy for community function). We found that neighbor effects on the composition and function of adjacent communities follow a dominance hierarchy. Specifically, mycorrhizal communities established from soils collected in Douglas-fir plantations were both the least sensitive to neighbor effects, and exerted the strongest influence on their neighbors by driving convergence in neighbor community composition and increasing neighbor seedling vigor. These results demonstrate that asymmetric neighbor effects mediated by ecological history can determine both community composition and function.
    Description: National Science Foundation. Grant Numbers: DBI-1401332, DEB-1209441 New Zealand Ministry of Business, Innovation, and Science Achievement Rewards for College Scientists Foundation Crown Research Institutes from the New Zealand Ministry of Business; Innovation and Employment's Science and Innovation Group; NSF Graduate Research Fellowship; NSF Doctoral Dissertation Improvement Grant; ARCS Fellowship; NSF Postdoctoral Research Fellowship in Biology
    Keywords: Community assembly ; Community coalescence ; Community dynamics ; Compositional variation ; Ecosystem function ; Ectomycorrhizal fungi ; Plant–fungal interactions
    Repository Name: Woods Hole Open Access Server
    Type: Article
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