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  • 1
    Keywords: Electronic books ; Konferenzschrift 2009 ; Bioinformatik ; Systembiologie
    Description / Table of Contents: This volume contains 17 peer-reviewed papers based on the presentations at the 9th Annual International Workshop on Bioinformatics and Systems Biology (IBSB 2009) held at the Life Science Engineering Building of Boston University from July 27 to 29, 2009. This workshop started in 2001 as a platform for doctoral students and young researchers to present and discuss their research results and approaches in bioinformatics and systems biology. It is part of a collaborative educational program involving leading institutions and leaders committed to the following institutions and programs: Boston University Graduate Program in Bioinformatics; Charité - Universitätsmedizin Berlin; Freie Universität Berlin; Global COE Program — Center of Education and Research for Advanced Genome-Based Medicine, University of Tokyo; The International Research Training Group (IRTG) Genomics and Systems Biology of Molecular Networks; International Research and Training Program on Bioinformatics and Systems Biology, Kyoto University Bioinformatics Center; Max-Delbrück Center for Molecular Medicine in Berlin; Max Planck Institute for Molecular Genetics in Berlin; Max Planck Institute of Molecular Plant Physiology in Potsdam
    Type of Medium: Online Resource
    Pages: 1 Online-Ressource (215 Seiten)
    ISBN: 9781848165786
    Series Statement: Genome Informatics 22
    RVK:
    Language: English
    Note: Description based on publisher supplied metadata and other sources
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  • 2
    Online Resource
    Online Resource
    Oxford :Oxford University Press, Incorporated,
    Keywords: Mathematical statistics. ; Electronic books.
    Description / Table of Contents: Many genes and indeed genomes have already been sequenced: the first draft of the human genome is due to be completed in 2001. There is therefore a large and ever increasing amount of biological information at the molecular level. We also have much information about biological systems at the cellular and organism level. However there is a large gap in our knowledge between these two levels i.e. how genes and proteins are networked to form a biological system.Post-genome Informatics provides the starting point for understanding that gap.
    Type of Medium: Online Resource
    Pages: 1 online resource (159 pages)
    Edition: 1st ed.
    ISBN: 9780191544927
    DDC: 572.8/6/0285
    Language: English
    Note: Intro -- Contents -- 1 Blueprint of life -- Gene and genome -- DNA and protein -- Central dogma -- RNA world -- Cell -- Technological developments in molecular biology -- Human Genome Project -- Reductionism in biology -- Grand challenges in post-genome informatics -- Genetic and chemical blueprints of life -- 2 Molecular biology databases -- 2.1 Historical background -- Evolution of molecular biology databases -- Bibliographic databases -- Amino acid sequence databases -- Three-dimensional structure databases -- Nucleotide sequence databases -- Flat file format -- Genome databases -- 2.2 Informatics technologies -- Relational databases -- Deductive databases -- Object-oriented databases -- Link-based integration -- Knowledge base -- World Wide Web -- Computer graphics -- 2.3 New generation of molecular biology databases -- Elements and compounds -- Amino acid indices -- Protein families and sequence motifs -- Classification of protein 3D structures -- Orthologues and paralogues -- Reactions and interactions -- Biochemical pathways -- Genome diversity -- 3 Sequence analysis of nucleic acids and proteins -- 3.1 Similarity search -- Problems in sequence analysis -- Dynamic programming -- Global alignment -- Local alignment -- Database search -- FASTA algorithm -- BLAST algorithm -- Statistical significance -- Multiple alignment -- Phylogenetic analysis -- Simulated annealing -- Genetic algorithms -- 3.2 Prediction of structures and functions -- Thermodynamic principle -- Prediction of RNA secondary structures -- Hopfield neural network -- Prediction of protein secondary structures -- Prediction of transmembrane segments -- Hierarchical neural network -- Hidden Markov model -- Formal grammar -- Prediction of protein 3D structures -- Gene finding and functional predictions -- Expert system for protein sorting prediction. , 4 Network analysis of molecular interactions -- 4.1 Network representation and computation -- Level of abstraction -- Molecular networks -- Graphs -- Common subgraph -- Heuristic network comparison -- Path computation -- Binary relation and deduction -- Implementation -- 4.2 Principles of biochemical networks -- Metabolic network -- Genomic perspective -- Protein-protein interaction network -- Gene regulatory network -- Network principles -- Complex systems -- Appendix. Methods in computational molecular biology-Bibliography -- 1. Sequence analysis I. Sequence alignment -- 1.1 Pairwise sequence alignment -- 1.2 Database search -- 1.3 Multiple sequence alignment -- 1.4 RNA secondary structure prediction -- 2. Sequence analysis II. Sequence features -- 2.1 Protein secondary structure prediction -- 2.2 Protein families and sequence motifs -- 2.3 Functional predictions -- 2.4 Gene finding -- 3. Structure analysis -- 3.1 Protein structure comparison -- 3.2 Protein 3D structure prediction -- 3.3 RNA 3D structure modelling -- 4. Network analysis -- 4.1 Genome analysis -- 4.2 Pathway analysis -- Index -- A -- B -- C -- D -- E -- F -- G -- H -- I -- J -- K -- L -- M -- N -- O -- P -- Q -- R -- S -- T -- U -- V -- W -- X -- Z.
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  • 3
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 16 (1977), S. 2674-2680 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 4
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Biochemistry 16 (1977), S. 3115-3121 
    ISSN: 1520-4995
    Source: ACS Legacy Archives
    Topics: Biology , Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 5
    Electronic Resource
    Electronic Resource
    s.l. : American Chemical Society
    Journal of the American Chemical Society 100 (1978), S. 424-432 
    ISSN: 1520-5126
    Source: ACS Legacy Archives
    Topics: Chemistry and Pharmacology
    Type of Medium: Electronic Resource
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  • 6
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science Ltd.
    Molecular microbiology 43 (2002), S. 0 
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: The target genes for SYCRP1, a cyanobacterial cAMP receptor protein, were surveyed using a DNA micro-array method. Total RNAs were extracted from a wild-type strain and a sycrp1 disruptant of Synechocystis sp. PCC 6803, and the respective gene expression levels were compared. The expression levels of six genes (slr1667, slr1668, slr2015, slr2016, slr2017 and slr2018) were clearly decreased by the disruption of the sycrp1 gene. The data suggest that slr1667 and slr1668 constitute one operon and the other four genes constitute another operon. Transcription start points for the first genes of these putative operons, which are slr1667 and slr2015, were determined by primer extension experiments. Gel mobility shift assays and DNase I footprint analyses were carried out to explore the binding of SYCRP1 to the putative promoter regions of slr1667 and slr2015. SYCRP1 bound to the specific site in the 5′ upstream region of slr1667 from positions –170 to –155 relative to the transcription start point, while it did not bind to the 5′ upstream region of slr2015. It was concluded that SYCRP1 regulates the expression of the slr1667 gene directly by binding to a specific site in its promoter.
    Type of Medium: Electronic Resource
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  • 7
    Electronic Resource
    Electronic Resource
    Oxford, UK : Blackwell Science, Ltd
    Molecular microbiology 40 (2001), S. 0 
    ISSN: 1365-2958
    Source: Blackwell Publishing Journal Backfiles 1879-2005
    Topics: Biology , Medicine
    Notes: A histidine kinase, Hik33, appears to sense decreases in temperature and to regulate the expression of certain cold-inducible genes in the cyanobacterium Synechocystis sp. PCC6803. To examine the role of Hik33 in the regulation of gene expression, we analysed a ΔHik33 mutant using the DNA microarray technique. In wild-type cells, genes that were strongly induced at low temperature encoded proteins that were predominantly subunits of the transcriptional and translational machinery. Most cold-repressible genes encoded components of the photosynthetic machinery. Mutation of the hik33 gene suppressed the expression of some of these cold-regulated genes, which could be divided into three groups according to the effect of the mutation of hik33. In the first group, regulation of gene expression by low temperature was totally abolished; in the second group, the extent of such regulation was reduced by half; and, in the third group, such regulation was totally unaffected. These results suggest that expression of the genes in the first group is regulated solely by Hik33, expression of genes in the third group is regulated by an as yet unidentified cold sensor, and expression of genes in the second group is regulated by both these cold sensors.
    Type of Medium: Electronic Resource
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  • 8
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature genetics 33 (2003), S. 305-310 
    ISSN: 1546-1718
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] In the past decade, bioinformatics has become an integral part of research and development in the biomedical sciences. Bioinformatics now has an essential role both in deciphering genomic, transcriptomic and proteomic data generated by high-throughput experimental technologies and in organizing ...
    Type of Medium: Electronic Resource
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  • 9
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature America, Inc.
    Nature genetics 23 (1999), S. 33-34 
    ISSN: 1546-1718
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Medicine
    Notes: [Auszug] Although the emerging cDNA microarray technology has made it possible to observe genome-wide patterns of gene expression, there are no well-established schemes for analysing their dispersed patterns and formulating functional annotation of anonymous sequences. Toward systematic gene function ...
    Type of Medium: Electronic Resource
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  • 10
    Electronic Resource
    Electronic Resource
    [s.l.] : Nature Publishing Group
    Nature biotechnology 25 (2007), S. 547-554 
    ISSN: 1546-1696
    Source: Nature Archives 1869 - 2009
    Topics: Biology , Process Engineering, Biotechnology, Nutrition Technology
    Notes: [Auszug] The detailed structure of molecular networks, including their dependence on conditions and time, are now routinely assayed by various experimental techniques. Visualization is a vital aid in integrating and interpreting such data. We describe emerging approaches for representing and visualizing ...
    Type of Medium: Electronic Resource
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