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  • 1
    Publication Date: 2023-01-13
    Type: Dataset
    Format: application/zip, 2 datasets
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  • 2
    Publication Date: 2023-01-13
    Keywords: Ammonium; BC_10; BC_4; BC_6; BC_8; CTD; DATE/TIME; delta; DEPTH, water; Event label; Nitrate; Nitrite; Nitrous oxide, dissolved; Nitrous oxide, standard deviation; Oxygen; Oxygen, apparent utilization; Ratio; Saanich Inlet; Salinity; Temperature, water
    Type: Dataset
    Format: text/tab-separated-values, 480 data points
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  • 3
    Publication Date: 2023-01-13
    Keywords: BC_10; BC_4; BC_6; BC_8; CTD; DATE/TIME; DEPTH, water; Event label; Saanich Inlet; Site preference, N2O; δ15N; δ18O
    Type: Dataset
    Format: text/tab-separated-values, 150 data points
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  • 4
    Publication Date: 2022-10-26
    Description: © The Author(s), 2019. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Selden, C. R., Mulholland, M. R., Bernhardt, P. W., Widner, B., Macias-Tapia, A., Ji, Q., & Jayakumar, A. Dinitrogen fixation across physico-chemical gradients of the Eastern Tropical North Pacific oxygen deficient zone. Global Biogeochemical Cycles, 33, (2019): 1187-1202, doi:10.1029/2019GB006242.
    Description: The Eastern Tropical North Pacific Ocean hosts one of the world's largest oceanic oxygen deficient zones (ODZs). Hot spots for reactive nitrogen (Nr) removal processes, ODZs generate conditions proposed to promote Nr inputs via dinitrogen (N2) fixation. In this study, we quantified N2 fixation rates by 15N tracer bioassay across oxygen, nutrient, and light gradients within and adjacent to the ODZ. Within subeuphotic oxygen‐deplete waters, N2 fixation was largely undetectable; however, addition of dissolved organic carbon stimulated N2 fixation in suboxic (〈20 μmol/kg O2) waters, suggesting that diazotroph communities are likely energy limited or carbon limited and able to fix N2 despite high ambient concentrations of dissolved inorganic nitrogen. Elevated rates (〉9 nmol N·L−1·day−1) were also observed in suboxic waters near volcanic islands where N2 fixation was quantifiable to 3,000 m. Within the overlying euphotic waters, N2 fixation rates were highest near the continent, exceeding 500 μmol N·m−2·day−1 at one third of inshore stations. These findings support the expansion of the known range of diazotrophs to deep, cold, and dissolved inorganic nitrogen‐replete waters. Additionally, this work bolsters calls for the reconsideration of ocean margins as important sources of Nr. Despite high rates at some inshore stations, regional N2 fixation appears insufficient to compensate for Nr loss locally as observed previously in the Eastern Tropical South Pacific ODZ.
    Description: We gratefully acknowledge the efforts of the captain and crew of the NOAA vessel Ronald H. Brown and the scientists who participated in the collection and analysis of the data presented here, particularly Shannon Cofield, Wei Yan, Nicole Travis, and Matt Forbes. We thank the Monterey Bay Aquatic Research Institute for the use of their pump profiling system and Margeurite Blum for her expertise in its use. Finally, we thank Bess Ward for the use of her facilities at Princeton University. This work was supported by the National Science Foundation Division of Ocean Sciences (NSF‐OCE) Grant OCE‐1356056 to M. R. M. and A. J. Data will be made available at the website (https://www.bco‐dmo.org/project/472492). The authors declare no conflicts of interest.
    Keywords: Nitrogen fixation ; Oxygen deficient zone ; Eastern tropical pacific ; Diazotroph ; Oxygen minimum zone ; Aphotic
    Repository Name: Woods Hole Open Access Server
    Type: Article
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  • 5
    Publication Date: 2021-02-08
    Description: Salt marshes provide many key ecosystem services that have tremendous ecological and economic value. One critical service is the removal of fixed nitrogen from coastal waters, which limits the negative effects of eutrophication resulting from increased nutrient supply. Nutrient enrichment of salt marsh sediments results in higher rates of nitrogen cycling and, commonly, a concurrent increase in the flux of nitrous oxide, an important greenhouse gas. Little is known, however, regarding controls on the microbial communities that contribute to nitrous oxide fluxes in marsh sediments. To address this disconnect, we generated profiles of microbial communities and communities of micro-organisms containing specific nitrogen cycling genes that encode several enzymes (amoA, norB, nosZ) related to nitrous oxide flux from salt marsh sediments. We hypothesized that communities of microbes responsible for nitrogen transformations will be structured by nitrogen availability. Taxa that respond positively to high nitrogen inputs may be responsible for the elevated rates of nitrogen cycling processes measured in fertilized sediments. Our data show that, with the exception of ammonia-oxidizing archaea, the community composition of organisms involved in the production and consumption of nitrous oxide was altered under nutrient enrichment. These results suggest that previously measured rates of nitrous oxide production and consumption are likely the result of changes in community structure, not simply changes in microbial activity.
    Type: Article , PeerReviewed
    Format: text
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  • 6
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    AGU (American Geophysical Union) | Wiley
    In:  Global Biogeochemical Cycles, 32 (12). pp. 1790-1802.
    Publication Date: 2021-02-08
    Description: The ocean is estimated to contribute up to ~20% of global fluxes of atmospheric nitrous oxide (N2O), an important greenhouse gas and ozone depletion agent. Marine oxygen minimum zones contribute disproportionately to this flux. To further understand the partition of nitrification and denitrification and their environmental controls on marine N2O fluxes, we report new relationships between oxygen concentration and rates of N2O production from nitrification and denitrification directly measured with 15N tracers in the Eastern Tropical Pacific. Highest N2O production rates occurred near the oxic‐anoxic interface, where there is strong potential for N2O efflux to the atmosphere. The dominant N2O source in oxygen minimum zones was nitrate reduction, the rates of which were 1 to 2 orders of magnitude higher than those of ammonium oxidation. The presence of oxygen significantly inhibited the production of N2O from both nitrification and denitrification. These experimental data provide new constraints to a multicomponent global ocean biogeochemical model, which yielded annual oceanic N2O efflux of 1.7–4.4 Tg‐N (median 2.8 Tg‐N, 1 Tg = 1012 g), with denitrification contributing 20% to the oceanic flux. Thus, denitrification should be viewed as a net N2O production pathway in the marine environment.
    Type: Article , PeerReviewed , info:eu-repo/semantics/article
    Format: text
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  • 7
    Publication Date: 2017-07-17
    Description: Digital macro photography and settling tests were carried out to investigate the morphological and settling characteristics of ANAMMOX granules in a high-rate reactor. The ANAMMOX granules could be divided into settling and floating granules. The settling granules with an average diameter of 2.96 ± 0.99 mm were smaller than the floating granules with an average diameter of 4.58 ± 1.22 mm. A settling model was established and validated to correlate the settling velocity with the density (ρG), mass shape factor (ψmass), shape-correction factor (characterized by sphericity (Φ′) or roundness (ξ)) and projected area equivalent sphere diameter (dP) of ANAMMOX granules. The sphericity was more suitable than the roundness for describing the settling behavior. The sensitivity of four parameters was in the order of ρG, ψmass, dP and Φ′. Based on the settling model, ANAMMOX granules with diameter of 1.75–4.00 mm were supposed to be optimal for the ANAMMOX process.
    Type: Article , PeerReviewed
    Format: text
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  • 8
    Publication Date: 2017-07-18
    Description: The granule floatation is a serious issue of the anammox (anaerobic ammonium oxidation) process when high loading rates are applied that results in instability or even system collapse. The present study reports the granule floatation in an anammox reactor when high loading rates were applied. The comparison of enlarged photos taken for the settling and floating granules showed that the two kinds of granules both contained macroscopic gas pockets accounting for 11 +/- 14% of total volume. The settling granules had gas tunnels that could release the gas bubbles, while the floating granules did not. The presence of gas bubbles enclosed in the gas pockets led to the small density of 979.2 +/- 15.8 mg L(-1) and flotation of anammox granules. Consequently, the flotation caused washout of anammox granules and the deterioration of anammox process (volumetric removal rate decreased from 4.00 to 2.46 kg N m(-3) d(-1)). The collection of floating granules, breaking them into small pieces and then returning to the anammox reactor proved an effective control strategy. The volumetric removal rate was finally up to 16.5 kg N m(-3) d(-1) after the control strategy was put into use.
    Type: Article , PeerReviewed
    Format: text
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  • 9
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    AGU (American Geophysical Union) | Wiley
    In:  Journal of Geophysical Research: Biogeosciences, 121 (8). pp. 2082-2095.
    Publication Date: 2019-02-01
    Description: Salt marshes provide numerous valuable ecological services. In particular, nitrogen (N) removal in salt marsh sediments alleviates N loading to the coastal ocean. N removal reduces the threat of eutrophication caused by increased N inputs from anthropogenic sources. It is unclear, however, whether chronic nutrient over-enrichment alters the capacity of salt marshes to remove anthropogenic N. To assess the effect of nutrient enrichment on N cycling in salt marsh sediments, we examined important N cycle pathways in experimental fertilization plots in a New England salt marsh. We determined rates of nitrification, denitrification, and dissimilatory nitrate reduction to ammonium (DNRA) using sediment slurry incubations with 15 N labeled ammonium or nitrate tracers under oxic headspace (20% oxygen / 80% helium). Nitrification and denitrification rates were more than ten-fold higher in fertilized plots compared to control plots. By contrast, DNRA, which retains N in the system, was high in control plots but not detected in fertilized plots. The relative contribution of DNRA to total nitrate reduction largely depends on the carbon/nitrate ratio in the sediment. These results suggest that long-term fertilization shifts N cycling in salt marsh sediments from predominantly retention to removal. Long-term fertilization alters the relative importance of nitrate reduction pathways in salt marsh sediments: NO 3 - reduction in salt marsh sediments (PDF Download Available). Available from: https://www.researchgate.net/publication/305480944_Long-term_fertilization_alters_the_relative_importance_of_nitrate_reduction_pathways_in_salt_marsh_sediments_NO_3_-_reduction_in_salt_marsh_sediments [accessed Jun 6, 2017].
    Type: Article , PeerReviewed
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  • 10
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    AGU (American Geophysical Union) | Wiley
    In:  Geophysical Research Letters, 42 (24). 10,755-10,764.
    Publication Date: 2018-02-05
    Description: The Eastern Tropical South Pacific oxygen minimum zone (ETSP-OMZ) is a site of intense nitrous oxide (N2O) flux to the atmosphere. This flux results from production of N2O by nitrification and denitrification, but the contribution of the two processes is unknown. The rates of these pathways and their distributions were measured directly using 15N tracers. The highest N2O production rates occurred at the depth of peak N2O concentrations at the oxic-anoxic interface above the oxygen deficient zone (ODZ) because slightly oxygenated waters allowed (1) N2O production from both nitrification and denitrification and (2) higher nitrous oxide production yields from nitrification. Within the ODZ proper (i.e., anoxia), the only source of N2O was denitrification (i.e., nitrite and nitrate reduction), the rates of which were reflected in the abundance of nirS genes (encoding nitrite reductase). Overall, denitrification was the dominant pathway contributing the N2O production in the ETSP-OMZ.
    Type: Article , PeerReviewed
    Format: text
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